BAC Information

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BAC

Clone NameB6Ng01-157J04
Chromosome3 (Build37)
Map Location 153,234,647 - 153,409,831
singlet/doubletdoublet
Overlap geneSt6galnac3, EG545578
Upstream geneAk5, LOC100040705, Pigk, Rpl29-ps1, St6galnac5, LOC100040750
Downstream geneAsb17, Msh4, Rabggtb, Acadm, Slc44a5, LOC100040980, Lhx8, LOC100040810, LOC100040829, Tyw3, Cryz, BC007180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157J04.bB6Ng01-157J04.g
ACCDH951768DH951769
length1,1661,055
definitionDH951768|Mus musculus domesticus DNA, BAC clone: B6Ng01-157J04, 5' end.DH951769|Mus musculus domesticus DNA, BAC clone: B6Ng01-157J04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,408,737 - 153,409,831)(153,234,647 - 153,235,763)
sequence
gaattcttataggattatcactaagaattaagatatcatctatttgtcta
tatagcatcactacaagacagtatatctttgtagttctgcagaaatctgc
tcaaaagggtgggtcaatacctaacgattgctgtttgtgtttaataacaa
caggaaaagcatattaatagcaggaatcttttctcaaatgtaatctcctc
agccttgcctaaggagccaatccaccatagcttttcagccgtggtgggac
cgtctcagcaagatcacttcctagtttttagcttcttctagatccctccc
ggcagcatttgatgcagcagagcgaaaccagctaagtattctcctgagat
gaggagtttggcaggtgtcatcgagttcagtggagcctgtttctgctctc
cctgcttagttcagggacctggggtcccagagaactcattggccaccaaa
gcggctctagccaagagcttgtgggattttgtctcttaagtgcaaagatg
aaattctcagattacaatctgtgaatcttagagaagtttattataaactc
ctgggtggaagcctaagagatggggagaactagagctcccgtatagcagg
acggttcccaggaacggggtacccttgagtggttagtcagaggctttgaa
aaggactgtggaagagaacaaagaagctgtgtctgcagaggctggttgac
cagagctgccatcctgtagagagagaaaaaagcactggctaccttaccac
aggctccttgctcacttctgtgttagaactaacatcctgctactgataga
ttaacacttttgaaagctgttaacttggcagactgctagcttctagacaa
cttccaaagcttaggaatgccatggataagatagtatcttaggcccgtag
agaagtctcctccatcttgctgtaaccgcctctgaagtacccactaatat
attttaaagttgctttgattatggctttctgtgttctgtgaactaaaaaa
tgtcatgaaatagcttcaattttatggtatttggggtaacctaagtctgt
gtctccatggtatggtgactcagaataaaccattctttacctttttaaga
agagaagcgggaggggtcgttggttttccttttgagtcaacagactaaga
cacgaaactggagtga
gaattcaactctaaggcagacgcagtgctgggcactgctgttcagttact
ttgtctgtcttcagtagacaccggtcatggcgccctttctccctagagtc
ctccccacggtgatctataaactgtaaagtgctagtgctttaaaatgatt
ttaaagcaagccctggaattacattaagggcttatccgagccagaaggag
gctgatgatggtcaggaggaaccgacgcagaagggtcacgtaaccatttc
cggtcggcagtggagccactccgccccctcttaccaatgaatccctgtcc
atatagacctcaaagtgctcagcctgctcgctgtctgcgggtttggcctc
ctgaccagacgtttccattaccgcagctgctgtttgtaagcgtgtagcag
ccctgcgtcttaatgcttctcaccacacgcttaatttttttttcttctcc
tagaagaaattatggccatttcggctgagtgtccccattctgtattcttt
cagagctcgtattcatcttttattttcctgaatgaggtttggtttatagc
atataagataggaaaacaggattgaaaaggctgggagaatataaatcttc
ccttggaaacaaaatgctctcagcgcattttaaagacttcagagtttttt
tgacgccctcattcactggagaattttggaggaagtaaaatccgagaatc
cctctccctcttccccccgccactcccctatctctctctttcacacacac
acagaaataaaaaaatttaaaaagccagccatatagcctgattattccaa
tgtcttccagtacactgtgtgttccgtcagacactccatgttggaaaggt
tttccatgtctcgctgggtttgcacattccttttttccagccaaagttca
gatacttcgaggacagagctacatcctaaccatgcgtagagtctattaca
tcatggtgtctatacatcatgagtctattacatcatgatcgctagcaatc
cagagctccactggtgtggtactctggactcggtgcttttcagctacccc
cactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_153408737_153409831
seq2: B6Ng01-157J04.b_121_1213 (reverse)

seq1  TCACTCCAGTTTC-TGTCCTAAGTCTTGTTGATACAAACAAAGAAAACCA  49
      ||||||||||||| ||| || |||| ||||||  |||  || ||||||||
seq2  TCACTCCAGTTTCGTGT-CTTAGTC-TGTTGACTCAA--AAGGAAAACCA  46

seq1  ACAGACACCT-CCGC-TCTCATCTTAAAAAGGTAAGAGATGGTTTATTCT  97
      || ||| ||| |||| |||| ||||||||||||||   ||||||||||||
seq2  AC-GACCCCTCCCGCTTCTCTTCTTAAAAAGGTAAAGAATGGTTTATTCT  95

seq1  GAGTCACCATACCATGGAGACACAGACTTAGGTTACCCCAAATACCATAA  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACCATACCATGGAGACACAGACTTAGGTTACCCCAAATACCATAA  145

seq1  AATGGAAGCTATTTCATGACATTTTATAGTTCACAGAACACAGAAAGCCA  197
      ||| ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AATTGAAGCTATTTCATGACATTTTTTAGTTCACAGAACACAGAAAGCCA  195

seq1  TAAATCAAAGCAACTTTAAAATATATTAGTGGGTACTTCAGAGGCGGTTA  247
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-AATCAAAGCAACTTTAAAATATATTAGTGGGTACTTCAGAGGCGGTTA  244

seq1  CAGCAAGATGGAGGAGACTTCTCTACGGGCCTAAGATACTATC-TATCCA  296
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAGCAAGATGGAGGAGACTTCTCTACGGGCCTAAGATACTATCTTATCCA  294

seq1  TGGCATTCCTAAGCTTTGG-AGTTGTCTTAGAAGCTAGCAGTCTGCCAAG  345
      ||||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  TGGCATTCCTAAGCTTTGGAAGTTGTC-TAGAAGCTAGCAGTCTGCCAAG  343

seq1  TTAACAGCTTTCAAAAGTGTTAATCTATCAGTAGCAGGATGTTAGTTCTA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGCTTTCAAAAGTGTTAATCTATCAGTAGCAGGATGTTAGTTCTA  393

seq1  ACACAGAAGTGAGCAAGGAGCCTGTGGTAAGGTAGCCAGTGCTTTTTTCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAAGTGAGCAAGGAGCCTGTGGTAAGGTAGCCAGTGCTTTTTTCT  443

seq1  CTCTCTACAGGATGGCAGCTCTGGTCAACCAGCCTCTGCAGACACAGCTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTACAGGATGGCAGCTCTGGTCAACCAGCCTCTGCAGACACAGCTT  493

seq1  CTTTGTTCTCTTCCACAGTCCTTTTCAAAGCCTCTGACTAACCACTCAAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTCTCTTCCACAGTCCTTTTCAAAGCCTCTGACTAACCACTCAAG  543

seq1  GGTACCCCGTTCCTGGGAACCGTCCTGCTATACGGGAGCTCTAGTTCTCC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCCCGTTCCTGGGAACCGTCCTGCTATACGGGAGCTCTAGTTCTCC  593

seq1  CCATCTCTTAGGCTTCCACCCAGGAGTTTATAATAAACTTCTCTAAGATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTTAGGCTTCCACCCAGGAGTTTATAATAAACTTCTCTAAGATT  643

seq1  CACAGATTGTAATCTGAGAATTTCATCTTTGCACTTAAGAGACAAAATCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATTGTAATCTGAGAATTTCATCTTTGCACTTAAGAGACAAAATCC  693

seq1  CACAAGCTCTTGGCTAGAGCCGCTTTGGTGGCCAATGAGTTCTCTGGGAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCTCTTGGCTAGAGCCGCTTTGGTGGCCAATGAGTTCTCTGGGAC  743

seq1  CCCAGGTCCCTGAACTAAGCAGGGAGAGCAGAAACAGGCTCCACTGAACT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTCCCTGAACTAAGCAGGGAGAGCAGAAACAGGCTCCACTGAACT  793

seq1  CGATGACACCTGCCAAACTCCTCATCTCAGGAGAATACTTAGCTGGTTTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGACACCTGCCAAACTCCTCATCTCAGGAGAATACTTAGCTGGTTTC  843

seq1  GCTCTGCTGCATCAAATGCTGCCGGGAGGGATCTAGAAGAAGCTAAAAAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCTGCATCAAATGCTGCCGGGAGGGATCTAGAAGAAGCTAAAAAC  893

seq1  TAGGAAGTGATCTTGCTGAGACGGTCCCACCACGGCTGAAAAGCTATGGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGTGATCTTGCTGAGACGGTCCCACCACGGCTGAAAAGCTATGGT  943

seq1  GGATTGGCTCCTTAGGCAAGGCTGAGGAGATTACATTTGAGAAAAGATTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGGCTCCTTAGGCAAGGCTGAGGAGATTACATTTGAGAAAAGATTC  993

seq1  CTGCTATTAATATGCTTTTCCTGTTGTTATTAAACACAAACAGCAATCGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTATTAATATGCTTTTCCTGTTGTTATTAAACACAAACAGCAATCGT  1043

seq1  TAGGTATTGACCCACCCTTTTGAGCAGATTTCTGCAGAACTACAAAGATA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTATTGACCCACCCTTTTGAGCAGATTTCTGCAGAACTACAAAGATA  1093

seq1: chr3_153234647_153235763
seq2: B6Ng01-157J04.g_66_1120

seq1  GAATTCAACTCTAAGGCAGACGCAGTGCTGGGCACTGCTGTTCAGTTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCTAAGGCAGACGCAGTGCTGGGCACTGCTGTTCAGTTACT  50

seq1  TTGTCTGTCTTCAGTAGACACCGGTCATGGCGCCCTTTCTCCCTAGAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGTCTTCAGTAGACACCGGTCATGGCGCCCTTTCTCCCTAGAGTC  100

seq1  CTCCCCACGGTGATCTATAAACTGTAAAGTGCTAGTGCTTTAAAATGATT  150
      |||||||||||||||||||||||||||||||||||               
seq2  CTCCCCACGGTGATCTATAAACTGTAAAGTGCTAG---------------  135

seq1  TTAAAGCAAGCCCTGGAATTACATTAAGGGCTTGCTTTAAAATGATTTTA  200
                                      ||||||||||||||||||
seq2  --------------------------------TGCTTTAAAATGATTTTA  153

seq1  AAGCAAGCCCTGGAATTACATTAAGGGCTTATCCGAGCCAGAAGGAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGCCCTGGAATTACATTAAGGGCTTATCCGAGCCAGAAGGAGGCT  203

seq1  GATGATGGTCAGGAGGAACCGACGCAGAAGGGTCACGTAACCATTTCCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGGTCAGGAGGAACCGACGCAGAAGGGTCACGTAACCATTTCCGG  253

seq1  TCGGCAGTGGAGCCACTCCGCCCCCTCTTACCAATGAATCCCTGTCCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCAGTGGAGCCACTCCGCCCCCTCTTACCAATGAATCCCTGTCCATA  303

seq1  TAGACCTCAAAGTGCTCAGCCTGCTCGCTGTCTGCGGGTTTGGCCTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCTCAAAGTGCTCAGCCTGCTCGCTGTCTGCGGGTTTGGCCTCCTG  353

seq1  ACCAGACGTTTCCATTACCGCAGCTGCTGTTTGTAAGCGTGTAGCAGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACGTTTCCATTACCGCAGCTGCTGTTTGTAAGCGTGTAGCAGCCC  403

seq1  TGCGTCTTAATGCTTCTCACCACACGCTTAATTTTTTTTTCTTCTCCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTCTTAATGCTTCTCACCACACGCTTAATTTTTTTTTCTTCTCCTAG  453

seq1  AAGAAATTATGGCCATTTCGGCTGAGTGTCCCCATTCTGTATTCTTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTATGGCCATTTCGGCTGAGTGTCCCCATTCTGTATTCTTTCAG  503

seq1  AGCTCGTATTCATCTTTTATTTTCCTGAATGAGGTTTGGTTTATAGCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCGTATTCATCTTTTATTTTCCTGAATGAGGTTTGGTTTATAGCATA  553

seq1  TAAGATAGGAAAACAGGATTGAAAAGGCTGGGAGAATATAAATCTTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAGGAAAACAGGATTGAAAAGGCTGGGAGAATATAAATCTTCCCT  603

seq1  TGGAAACAAAATGCTCTCAGCGCATTTTAAAGACTTCAGAGTTTTTTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACAAAATGCTCTCAGCGCATTTTAAAGACTTCAGAGTTTTTTTGA  653

seq1  CGCCCTCATTCACTGGAGAATTTTGGAGGAAGTAAAATCCGAGAATCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCTCATTCACTGGAGAATTTTGGAGGAAGTAAAATCCGAGAATCCCT  703

seq1  CTCCCTCTTCCCCCCGCCACTCCCCTATCTCTCTCTTTCACACACACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCTTCCCCCCGCCACTCCCCTATCTCTCTCTTTCACACACACACA  753

seq1  GAAATAAAAAAATTTAAAAAGCCAGCCATATAGCCTGATTATTCCAATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAAAAAATTTAAAAAGCCAGCCATATAGCCTGATTATTCCAATGT  803

seq1  CTTCCAGTACACTGTGTGTTCCGTCAGACACTCCATGTTGGAAAGGTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGTACACTGTGTGTTCCGTCAGACACTCCATGTTGGAAAGGTTTT  853

seq1  CCATGTCTCGCTGGGTTTGCACATTCCTTTTTTCCAGCCAAAGTTCAGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTCTCGCTGGGTTTGCACATTCCTTTTTTCCAGCCAAAGTTCAGAT  903

seq1  ACCTCGAGGACAGAGCTACACCCTAACCATGCGGTAGAGGTCTATTACAT  1000
      || ||||||||||||||||| ||||||||||| ||||| |||||||||||
seq2  ACTTCGAGGACAGAGCTACATCCTAACCATGC-GTAGA-GTCTATTACAT  951

seq1  CATGGTGGTCTATTACATCATGGAGGTCTATTACATCATGGATCGCTTAG  1050
      |||||| ||||| |||||||||   |||||||||||||| |||||||   
seq2  CATGGT-GTCTA-TACATCATG--AGTCTATTACATCAT-GATCGCT--A  994

seq1  GCAAATCCCAGAGCTCCACTGGTGTGGGTACTCTGGGACTCGGTGCTTTT  1100
      ||||   |||||||||||||||||| |||||||| |||||||||||||||
seq2  GCAA--TCCAGAGCTCCACTGGTGT-GGTACTCT-GGACTCGGTGCTTTT  1040

seq1  CCCAGGCTA-CCCCACTC  1117
      |    |||| ||||||||
seq2  C---AGCTACCCCCACTC  1055