BAC Information

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BAC

Clone NameB6Ng01-157P24
Chromosome3 (Build37)
Map Location 95,938,080 - 95,939,122
singlet/doubletsinglet
Overlap geneOtud7b
Upstream geneLysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908
Downstream geneMtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-157P24.bB6Ng01-157P24.g
ACCDH952077DH952078
length1,2081,035
definitionDH952077|Mus musculus domesticus DNA, BAC clone: B6Ng01-157P24, 5' end.DH952078|Mus musculus domesticus DNA, BAC clone: B6Ng01-157P24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatagaccgcacacggagagatgattgccatttaagtttagtggc
tgcctgtgggaagccacatgtgccgttgcagagtggcactgactactgct
aggcaccacgcataagattggacaaacaaccaatgtgtacatatgcagta
aagtttttttgcaaagacactgcctggcccagacatgataatgaggttct
gtaaggtactgagagtataaccaatcagatgtgagacatacaaatgaggt
atgataatgaggttctataaggtactgagagagagtagccaatcagatga
ggaacatgcaaatgaggcttagtgcataaccaatccgggtgtgagacacg
cccctcctaggcctataaaagcagcaccagctctgggctcaaagtctttt
tgcctctacaatcaagctctcccaataaacgtgtgcagaaaaatcctgtt
gcagcgtcgtttttcctggccagtcgagcgtgcacaagaagtggtgccga
aaacccgggacaagaaacatcttcaggcacgagcgaagaccccctgctac
agggaggattcagaactgcatcacggggaaggagcagttcataaaggttc
ccgcaaaacagactgctgaaaaggatccagcgtgaattcagaactcttca
gctggggaacggtggtaatgaagtgttcctgcaaaacagactgctgagaa
agatccggagtggattcaaaactcttcagctgaggaacggcggtaccggt
aagtaaaaagaaattaatgtgagaggcatgctctcctacgaaatagatct
gataattgttgctggggttgctatctttcttgcctttgatcttatatcat
ggctttaattgtcaactcccaaaatgtaaagatacaaaaaatagtataaa
aatagtaaaaagcagaaaattaagtcaatttaccctccttctcgaggact
ctgagtcgttagattgtctagctcagaggatttctaaattattcacagag
aggaggagatttgaaggagctgctgcaagtatgagcagaaaagatctggt
caataggaggaatttcatgcttcccaacttactcgctatggcagatagaa
agcaattgggcaatgtacttcttttgaactctaaggggtgccagaaatgt
tcaggcttgtcccgtatttcccaatacatgatctctcacaggcgcagtat
ttatgtga
gaattctcatttgcattagatgaaaagcctttcattcacctgtgaattct
gaaagcatttaattttttttttttttggacagggtctttctttgtagctt
tgaattctcaatcctctcgcctctgcctcttgagtgctgatgttagaaat
gtgtaatacttgcctgccttgaaattcaatactttttattgttgttgttg
ttgaaacactttattcagaggcttgggggaaagttgtagaagtccatgtt
gtctgctgtcctgcccagggcagaccttagagatctccctgtcactaaga
gcttgaaactcaattcttaggcacaagttgcaagggggctgggtcacttc
atagaaagcttggccagaagctcttcatgtagttctggattagtgtgaga
ttaacagcaggggctgtttaccttaggctggattgctggcttggtgctta
ggatagtgaaacagatgcaaattagacatttgtttataatgaatttagtc
actaggtatttataactgcctattatattgtagataccttgctcagtgtt
ggactagggatatgaataaatcatgctctgtacccattggtttcttgtat
tattagagcactataagaaatagtgatttctcttttaaaaaaaaaaatcc
aaagaactaccaccaacaaaacaattcagttatcaggttagagacttata
atttttacaacccacaaaaatttgctatttgctcttactagttctaaaaa
tgtagaaaaatggaatcagatcatactacaaaaaagttgtattaagggat
agaagaggagtgaagaaaaaatcctttggaggtcatgcttggctttaagt
tttcggaggaatgtattgtctgagtcatctgttgtttcacaaattcttgt
tttgtcttttccaaaagatgattagtgggtcaatgagacagttgatactg
ggccactttatgaacgaaacccttctaagagcatcgtagaattaatgagt
gtgtcagagtgaactccacctaatttttgctttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95938080_95939122
seq2: B6Ng01-157P24.g_68_1102

seq1  GAATTCTCATTTGCATTAGATGAAAAGCCTTTCATTCACCTGTGAATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTTGCATTAGATGAAAAGCCTTTCATTCACCTGTGAATTCT  50

seq1  GAAAGCATTTAATTTTTTTTTTTTTTGGACAGGGTCTTTCTTTGTAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCATTTAATTTTTTTTTTTTTTGGACAGGGTCTTTCTTTGTAGCTT  100

seq1  TGAATTCTCAATCCTCTCGCCTCTGCCTCTTGAGTGCTGATGTTAGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTCTCAATCCTCTCGCCTCTGCCTCTTGAGTGCTGATGTTAGAAAT  150

seq1  GTGTAATACTTGCCTGCCTTGAAATTCAATACTTTTTATTGTTGTTGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATACTTGCCTGCCTTGAAATTCAATACTTTTTATTGTTGTTGTTG  200

seq1  TTGAAACACTTTATTCAGAGGCTTGGGGGAAAGTTGTAGAAGTCCATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACACTTTATTCAGAGGCTTGGGGGAAAGTTGTAGAAGTCCATGTT  250

seq1  GTCTGCTGTCCTGCCCAGGGCAGACCTTAGAGATCTCCCTGTCACTAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCTGTCCTGCCCAGGGCAGACCTTAGAGATCTCCCTGTCACTAAGA  300

seq1  GCTTGAAACTCAATTCTTAGGCACAAGTTGCAAGGGGGCTGGGTCACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAACTCAATTCTTAGGCACAAGTTGCAAGGGGGCTGGGTCACTTC  350

seq1  ATAGAAAGCTTGGCCAGAAGCTCTTCATGTAGTTCTGGATTAGTGTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGCTTGGCCAGAAGCTCTTCATGTAGTTCTGGATTAGTGTGAGA  400

seq1  TTAACAGCAGGGGCTGTTTACCTTAGGCTGGATTGCTGGCTTGGTGCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGCAGGGGCTGTTTACCTTAGGCTGGATTGCTGGCTTGGTGCTTA  450

seq1  GGATAGTGAAACAGATGCAAATTAGACATTTGTTTATAATGAATTTAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGTGAAACAGATGCAAATTAGACATTTGTTTATAATGAATTTAGTC  500

seq1  ACTAGGTATTTATAACTGCCTATTATATTGTAGATACCTTGCTCAGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGTATTTATAACTGCCTATTATATTGTAGATACCTTGCTCAGTGTT  550

seq1  GGACTAGGGATATGAATAAATCATGCTCTGTACCCATTGGTTTCTTGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAGGGATATGAATAAATCATGCTCTGTACCCATTGGTTTCTTGTAT  600

seq1  TATTAGAGCACTATAAGAAATAGTGATTTCTCTTTTAAAAAAAAAAATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGAGCACTATAAGAAATAGTGATTTCTCTTTTAAAAAAAAAAATCC  650

seq1  AAAGAACTACCACCAACAAAACAATTCAGTTATCAGGTTAGAGACTTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTACCACCAACAAAACAATTCAGTTATCAGGTTAGAGACTTATA  700

seq1  ATTTTTACAACCCACAAAAATTTGCTATTTGC-CTTACTAGTTCTAAAAA  749
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATTTTTACAACCCACAAAAATTTGCTATTTGCTCTTACTAGTTCTAAAAA  750

seq1  TGTAGAAAAATGGAATCAGATCATACTACAAAAAAGTTGTATTAAGGGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAAAATGGAATCAGATCATACTACAAAAAAGTTGTATTAAGGGAT  800

seq1  AGAAGAGGAGTGAAGAAAAAAATCCTTGGAGGTCATGCTTAGGCTTTAGG  849
      |||||||||||||||||||||  | ||||||||||||||| ||||||| |
seq2  AGAAGAGGAGTGAAGAAAAAATCCTTTGGAGGTCATGCTT-GGCTTTAAG  849

seq1  TTTTCGGAGGAATGTATTGTCTGAGTCATCTGTTGTTTTCAACAATTCTG  899
      ||||||||||||||||||||||||||||||||||| |||||  |||||| 
seq2  TTTTCGGAGGAATGTATTGTCTGAGTCATCTGTTG-TTTCACAAATTCTT  898

seq1  GTTTTGTCTTTTCCAAAAAGATGATTAGTGGGTGCAATGAGACAGTTGGA  949
      |||||||||||||| |||||||||||||||||| ||||||||||||| ||
seq2  GTTTTGTCTTTTCC-AAAAGATGATTAGTGGGT-CAATGAGACAGTT-GA  945

seq1  TACCTGGGCACTTTATGAACGAGCCCCTTCTACAGAGCACCGTAAGACTA  999
      |||  || ||||||||||||||  |||||||| |||||| ||||  | ||
seq2  TACTGGGCCACTTTATGAACGAAACCCTTCTA-AGAGCATCGTAGAATTA  994

seq1  ATGAGTGTGGTCAGAGGTGGATCTCCACCCTATTTTTGCTTTCT  1043
      |||||||| |||||||   || |||||||  |||||||||||||
seq2  ATGAGTGT-GTCAGAG--TGAACTCCACCTAATTTTTGCTTTCT  1035