BAC Information

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BAC

Clone NameB6Ng01-158F17
Chromosome8 (Build37)3 (Build37)
Map Location 13,349,835 - 13,351,03094,568,228 - 94,568,606
singlet/doubletsingletsinglet
Overlap geneTfdp1
Upstream geneEG434280, EG434279, Sox1, 1700094C09Rik, Tubgcp3, Atp11a, LOC100040229, Mcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3
Downstream geneAtp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25, LOC100041103, 2610019F03Rik, EG546036, Erich1, Dlgap2, LOC100041140
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158F17.bB6Ng01-158F17.g
ACCDH952325DH952326
length1,178448
definitionDH952325|Mus musculus domesticus DNA, BAC clone: B6Ng01-158F17, 5' end.DH952326|Mus musculus domesticus DNA, BAC clone: B6Ng01-158F17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(13,349,835 - 13,351,030)(94,568,228 - 94,568,606)
sequence
gaattcaccccacatacagtgcctttgtgctgtggcctgctgctctgctc
tggcacaaacggctgcagacctgggtgctcagcaggctgggcccagtggt
tacccagaagatgcagtctcccttcacccctttggtttggagctaggagg
ttggtttgccgaaggaggattttggctggtgtgaggtggcctgagcctct
agaaggattcattgtcccggtggggttctgtcccctggagggaggatacc
tgagtttcaaaggcattggatcaggcaacttctcagaaaggagaatagca
caaacggacggacaggcggatgcagtgaactcagaactctcttctgctag
atatgtccatgcacaggcacagatgacctccagaggtgacagtggctccc
agaaggctggcttcccagatagggcctgtgccaggctctttactccgggg
cttcagggctgcacagttccagctagccaggcctgttgacagccgttgtg
gagtcaggaaaatactgaagtatggtttcaggaattacactgtccattac
tgttggagggagtgtctttcaggttaacaatgcataaagagggtaattac
gggttgttccctaagaggtaggaatggtgatttccagtggtgtgtcccag
ttgctggagtgtaggtgttctgggtggaagctgatcctgaacggcatcct
ctagccaaagccagatgcgcagctctgtatacacttgggcagacattgat
tgaccaccgcagcaagaatgctggaaggtggtggccatgctgacaggagt
ggagattagcggtaggcactaggcccaaccttgccagggcttagctccag
caagctctgaagtttcaatgtgttttgtgtctagtgaggtcagtggccac
tttccctaggttatgaatttactccagttctccctcacctacactgtgta
gaaagatgtcactcaagagagttgagaccacaagcaggccatacatgtgt
acatcctctgaaagcttgtcacccctggcctggcacctgtgtggaaggct
agaatttacgggtctgttctctgacatctgggagaagtaccttcactatt
aagacaaacaagtaggtttcggaaaaccagtctctgtgtccagcttgggt
taagcaggctttcaggtgtgtgctgcag
caggacagtgagggctacacagaggaggagaaggaagaggaggaggagga
ggaggaggaggaggaaaggattcctccaatctaccttttccaaagcggac
tagactctgaagcagactctgccttgccaaaactgtccgggttatggatc
acaggatagctaaggggctttgacagagctggggtgttaagtgagaaggc
acagtgaggggtcaggaggagtcacctgatcccggccactgttcacccga
tctgttaacagttccacattgttcttttcttcattaactccgctgccagc
cgccagacttactcctggggcatgagaacaaaaggccaattctgacttta
tttctgcaccctaaaatggcaaacccagatttaagggtcattaaacttca
gccccacagactggtctcgctggtacttttccagaacctttctggtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_13349835_13351030
seq2: B6Ng01-158F17.b_50_1227

seq1  GAATTCACCCCACATACAGTGCCTTTGTGCTGTGGCCTGCTGCTCTGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCCACATACAGTGCCTTTGTGCTGTGGCCTGCTGCTCTGCTC  50

seq1  TGGCACAAACGGCTGCAGACCTGGGTGCTCAGCAGGCTGGGCCCAGTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAAACGGCTGCAGACCTGGGTGCTCAGCAGGCTGGGCCCAGTGGT  100

seq1  TACCCAGAAGATGCAGTCTCCCTTCACCCCTTTGGTTTGGAGCTAGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGAAGATGCAGTCTCCCTTCACCCCTTTGGTTTGGAGCTAGGAGG  150

seq1  TTGGTTTGCCGAAGGAGGATTTTGGCTGGTGTGAGGTGGCCTGAGCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTGCCGAAGGAGGATTTTGGCTGGTGTGAGGTGGCCTGAGCCTCT  200

seq1  AGAAGGATTCATTGTCCCGGTGGGGTTCTGTCCCCTGGAGGGAGGATACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGATTCATTGTCCCGGTGGGGTTCTGTCCCCTGGAGGGAGGATACC  250

seq1  TGAGTTTCAAAGGCATTGGATCAGGCAACTTCTCAGAAAGGAGAATAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTCAAAGGCATTGGATCAGGCAACTTCTCAGAAAGGAGAATAGCA  300

seq1  CAAACGGACGGACAGGCGGATGCAGTGAACTCAGAACTCTCTTCTGCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACGGACGGACAGGCGGATGCAGTGAACTCAGAACTCTCTTCTGCTAG  350

seq1  ATATGTCCATGCACAGGCACAGATGACCTCCAGAGGTGACAGTGGCTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCCATGCACAGGCACAGATGACCTCCAGAGGTGACAGTGGCTCCC  400

seq1  AGAAGGCTGGCTTCCCAGATAGGGCCTGTGCCAGGCTCTTTACTCCGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTGGCTTCCCAGATAGGGCCTGTGCCAGGCTCTTTACTCCGGGG  450

seq1  CTTCAGGGCTGCACAGTTCCAGCTAGCCAGGCCTGTTGACAGCCGTTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGGCTGCACAGTTCCAGCTAGCCAGGCCTGTTGACAGCCGTTGTG  500

seq1  GAGTCAGGAAAATACTGAAGTATGGTTTCAGGAATTACACTGTCCATTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGGAAAATACTGAAGTATGGTTTCAGGAATTACACTGTCCATTAC  550

seq1  TGTTGGAGGGAGTGTCTTTCAGGTTAACAATGCATAAAGAGGGTAATTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAGGGAGTGTCTTTCAGGTTAACAATGCATAAAGAGGGTAATTAC  600

seq1  GGGTTGTTCCCTAAGAGGTAGGAATGGTGATTTCCAGTGGTGTGTCCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGTTCCCTAAGAGGTAGGAATGGTGATTTCCAGTGGTGTGTCCCAG  650

seq1  TTGCTGGAGTGTAGGTGTTCTGGGTGGAAGCTGATCCTGAACGGCATCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGAGTGTAGGTGTTCTGGGTGGAAGCTGATCCTGAACGGCATCCT  700

seq1  CTAGCCAAAGCCAGATGCGCAGCTCTGTATACACTTGGGCAGACATTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCAAAGCCAGATGCGCAGCTCTGTATACACTTGGGCAGACATTGAT  750

seq1  TGACCACCGCAGCAAGAATGCTGGAAGGTGGTGGCCATGCTGACAGGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACCGCAGCAAGAATGCTGGAAGGTGGTGGCCATGCTGACAGGAGT  800

seq1  GGAGATTAGCGGTAGGCACTAGGCCCAACCTTGCCAGGGCTTAGCTCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTAGCGGTAGGCACTAGGCCCAACCTTGCCAGGGCTTAGCTCCAG  850

seq1  CAAGCTCTGAAGTTTCAATGTGTTTTGTGTCTAGTGAGGTCAGTGGCCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTCTGAAGTTTCAATGTGTTTTGTGTCTAGTGAGGTCAGTGGCCAC  900

seq1  TTTCCCTAGGTTATGAATTTACTCCAGTTCTCCCTCACCTACACTGTGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTAGGTTATGAATTTACTCCAGTTCTCCCTCACCTACACTGTGTA  950

seq1  GAAAGATGTCACTCAAGAGAGTTGAGACCACAAAGCAGGCCATACATGTG  1000
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAAAGATGTCACTCAAGAGAGTTGAGACCAC-AAGCAGGCCATACATGTG  999

seq1  TACAATCCTCTGAAAGCTTGTCACCCCTGGCCTGGCACCTGTGTGGAAGG  1050
      ||| |||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAC-ATCCTCTGAAAGCTTGTCACCCCTGGCCTGGCACCTGTGTGGAA-G  1047

seq1  GCTAGTATTTACGGGTCTGTCTCCTGACATCTGGGAGAAAGTAACTTTCA  1100
      ||||| ||||||||||||||   |||||||||||||| ||||| |||   
seq2  GCTAGAATTTACGGGTCTGTTCTCTGACATCTGGGAG-AAGTACCTT--C  1094

seq1  ACTATTAAGACAAACAAGTAGAGTTCCCGGGAGAACACAGTCTGCTGTTG  1150
      |||||||||||||||||||||  |||   ||| ||| |||||| ||||  
seq2  ACTATTAAGACAAACAAGTAGGTTTC---GGAAAAC-CAGTCT-CTGTGT  1139

seq1  CAAGGCTGTGGGGTTGACAGGCAGGCTTGCCAGGTGTGTGCTGCAG  1196
      | ||    | |||||   | ||||||||  ||||||||||||||||
seq2  CCAG---CTTGGGTT---AAGCAGGCTT-TCAGGTGTGTGCTGCAG  1178

seq1: chr3_94568228_94568606
seq2: B6Ng01-158F17.g_143_519

seq1  TTCCTCCAGTCTACCTTTTCCAAAGCAGACGAGAGCCTGAAGCAGACTCT  50
      |||||||| ||||||||||||||||| ||| |||  ||||||||||||||
seq2  TTCCTCCAATCTACCTTTTCCAAAGCGGACTAGACTCTGAAGCAGACTCT  50

seq1  GCCTTGCCAGAACTGTCCAGGTTATGGATCACAGGAGAGCTAAGGTGTCT  100
      ||||||||| |||||||| ||||||||||||||||| |||||||| | ||
seq2  GCCTTGCCAAAACTGTCCGGGTTATGGATCACAGGATAGCTAAGG-GGCT  99

seq1  TTGACAGAGCTGGGGTGTTAAGTGAGAAGGCACAGTGAGGGGTCAGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGAGCTGGGGTGTTAAGTGAGAAGGCACAGTGAGGGGTCAGGAGG  149

seq1  AGTCACCTGATCCCGGCCACGGTTCACCCGATCTGTTAACAGTTCCACAG  200
      |||||||||||||||||||| |||||||||||||||||||||||||||| 
seq2  AGTCACCTGATCCCGGCCACTGTTCACCCGATCTGTTAACAGTTCCACAT  199

seq1  TGTTCTTTTCTTCATCTAACTCCGCTTCCAGCCGCGAGACTTTCTCCTGT  250
      ||||||||||||||| |||||||||| |||||||| |||||| |||||| 
seq2  TGTTCTTTTCTTCAT-TAACTCCGCTGCCAGCCGCCAGACTTACTCCTGG  248

seq1  GGCAGGAGAACAAAAGGCCAATTCTGTCTTTAATTCTGCACCCTAGAATG  300
      |||| ||||||||||||||||||||| ||||| |||||||||||| ||||
seq2  GGCATGAGAACAAAAGGCCAATTCTGACTTTATTTCTGCACCCTAAAATG  298

seq1  GCAAACCCAGACCAAAGCCTCATCAAAACTTCAGCCCCACAGACTCTTCT  350
      |||||||||||   |||  ||||  ||||||||||||||||||||  |||
seq2  GCAAACCCAGATTTAAGGGTCAT-TAAACTTCAGCCCCACAGACTGGTCT  347

seq1  CGCTGGTAC-TTTCCAGAACCCTTCTGGTC  379
      ||||||||| ||||||||||| ||||||||
seq2  CGCTGGTACTTTTCCAGAACCTTTCTGGTC  377