BAC Information

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BAC

Clone NameB6Ng01-158G06
Chromosome3 (Build37)
Map Location 73,331,593 - 73,464,491
singlet/doubletdoublet
Overlap geneBche
Upstream gene2010204N08Rik, Slitrk3
Downstream geneLOC667425, LOC619764, LOC667434
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158G06.bB6Ng01-158G06.g
ACCDH952349DH952350
length1,2311,135
definitionDH952349|Mus musculus domesticus DNA, BAC clone: B6Ng01-158G06, 5' end.DH952350|Mus musculus domesticus DNA, BAC clone: B6Ng01-158G06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,463,220 - 73,464,491)(73,331,593 - 73,332,757)
sequence
gaattcttgctaggcagcatagcccaagttttcaagaatggaaatgattt
ccttgtgccagaaaagaacaacctctctcatctatcctagaaaataaaca
cagctgaaaatgaatgtgaacaatgttgtcagcccttgaaagacagcaca
tctgccagtgcttgatctggggctttccagatttcagatcggtgacaagt
aaactttactatttataagccactgggttcactataccttgccatggcag
tatagacagattaacatgtgtgtgtgtgtttctgtgtgtacaaaaataaa
aaatatatttgattcattctagatgctttaaaattaactttgtggatgct
gacaggaccctgatataactatctcttgtgaggctatgctagtgctatgg
catattaattaattaatcccagtggctatgccagtgcctggcaaatacag
aagtgtatgctcacaatcatctatcggatggaacacagggccctcaatga
agggggtagagaaagaacccaaggagctaaaggtgactgcaaccctatag
gaagaacaacaatatgaactaaccagtatcctccccctccagaactatgt
atctagttgcatatgtagcagaggatggcctacttgaccatcaatgggag
gagagccctggtcttgggaagatcatatgccccagtacaggggaatgcca
gggccaggcagcaggagtggttgggttggggagcagggcaggggagggac
tttcgggatagcatttaaaatgtaaatgaagaaaatatctaataaaaaag
aaaaagaatactagatatcctaagcagaggatactgcagtggaataaaat
cggttaattataataaactgtgcttaaaatgatcaagtggtgttaaactt
tgttttagtatgagtatgtaactagaataaatgttatagttaattcttta
aactgaaaagccattgttgatctatttcaaggattgaaatatttttatta
tttgaaatgaatagtaacatggtcaatttatggtgaattacttttgacag
agatcaaatttgatatacccttgcctctatgaaattaattttttattatg
gagaatttcagttctgtatctctaagatacgttaaaattcgtaaatgata
aagtatgattatagtgacctatcatccgcatttaaccataggatgctaga
tggcattagcatgcacggtgaatcttgatac
gaattcctttttaaacatttatatgatttggtgggtgccaagcacacatc
tgcaggagtcctttatctcattctgccatgtgggtcatggggatggaact
cgggtcctcaggcttggcgccaagcaccttaaccccttgagtcatctcac
aagcccgaaacaatggagctgttaaaacctcatcagcacacatgaaacaa
tgaatgactggataactaacgcagattgtcttctgctgacaatatcatct
agtttgaattaaaggctttgtattcatttatatttgtccctttggggaca
cataaaatattttgtgagtgggctttgacattgtttactctaaagtgtta
gttctacaccaaatgtcccaggtaactttcaattccattttatttaaggt
gagactttatttctttaataagtaaattagaaagttttctatagtcatgg
cttaatttggttttaaactcttaaatatttttaaattacaaccttaaatt
gtttgtgaccaaatttgctagcaacactgcttgtagatagggaggtaatc
tacaaatgaaaagccccactgtgctgggagtgcaggggatatttactgcc
aggaagaatatattgttactctgaccttcagggcaattgctgcataaggg
agaccccaaatttccaacacacagcagaaaccgagactgagggagccaac
gatcaaaggaaattttatttttactctttttctatttgtaacaaatctac
ccagagctaacaaaaacattgacttttagttaatattaaatcatttcctt
gatagaagatgattaaaagaaggcagaaaagagagtaatacaaagaatgg
tgtatttgctcacaaagaaaatgtcttcacatcctgtaaatctgttactg
tagctctgctgctgagacataggaaaaaggagtggttttctgttctggtt
tcaagggccttggagggcgggcatgggcatgaatgcagcatttaagaaat
tttttaaattgaagcattcttatatttctttactttaagaataatttttg
tttgtaatagtattgaatgtgaaattttcttaaaatataagtcattatga
tctgatgcatattttgtactttgcatttaatttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_73463220_73464491
seq2: B6Ng01-158G06.b_45_1275 (reverse)

seq1  GTATCAAAGTATCACAGTGCATGCTTATATATGGCAAACTGCTATGCATT  50
      ||||| |||  |||| ||||||||| ||     || | ||     |||| 
seq2  GTATC-AAGATTCACCGTGCATGCTAAT-----GCCATCT----AGCAT-  39

seq1  ACCTTTATGTTTAAAATGCTGAATGATAGGTTCACTTATTTAATCATTAC  100
       ||  |||| || |||||| | |||||||| ||||   | |||||| |||
seq2  -CC--TATGGTT-AAATGC-GGATGATAGG-TCAC---TATAATCA-TAC  79

seq1  TTTTATTCATTTTACGAATTTTTATATGGTA-CTCTAAGATACAGAACTG  149
      |||   ||| |||||||||||   ||  ||| ||   |||||||||||||
seq2  TTT--ATCA-TTTACGAATTT---TAACGTATCTTAGAGATACAGAACTG  123

seq1  AAATTCT-CATAAATTAAAAAATATATATTCAATAGAGGCAAGGGTATAT  198
      ||||||| |||||  |||||||| || |||  ||||||||||||||||||
seq2  AAATTCTCCATAA--TAAAAAAT-TA-ATTTCATAGAGGCAAGGGTATAT  169

seq1  ACATATTTTGATCTCTTGTTCAAAAGTTAATTCCACATTAAATTTGACCA  248
       || | ||||||||||   ||||||| ||||||  |||  || |||||||
seq2  -CA-AATTTGATCTCT--GTCAAAAG-TAATTCACCAT--AAATTGACCA  212

seq1  TGTTTTACTATTCATTTCATATAATTAAAAATATTTTCAATCCTTGAAAT  298
      ||  ||||||||||||||| |||| |||||||| ||||||||||||||||
seq2  TG--TTACTATTCATTTCAAATAA-TAAAAATA-TTTCAATCCTTGAAAT  258

seq1  AGATCAACAATGGCTTTTTCAGTTTAAAGAATTAACTATAACATTTATTC  348
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGATCAACAATGGC-TTTTCAGTTTAAAGAATTAACTATAACATTTATTC  307

seq1  TAGTTACATACTCATACTAAAACAAAGTTTAACACCACTTGATCATTTTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTACATACTCATACTAAAACAAAGTTTAACACCACTTGATCATTTTA  357

seq1  AGCACAGTTTATTATAATTAACCGATTTTATTCCACTGCAGTATCCTCTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGTTTATTATAATTAACCGATTTTATTCCACTGCAGTATCCTCTG  407

seq1  CTTAGGATATCTAGTATTCTTTTTCTTTTTTATTAGATATTTTCTTCATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGATATCTAGTATTCTTTTTCTTTTTTATTAGATATTTTCTTCATT  457

seq1  TACATTTTAAATGCTATCCCGAAAGTCCCTCCCCTGCCCTGCTCCCCAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTAAATGCTATCCCGAAAGTCCCTCCCCTGCCCTGCTCCCCAAC  507

seq1  CCAACCACTCCTGCTGCCTGGCCCTGGCATTCCCCTGTACTGGGGCATAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCACTCCTGCTGCCTGGCCCTGGCATTCCCCTGTACTGGGGCATAT  557

seq1  GATCTTCCCAAGACCAGGGCTCTCCTCCCATTGATGGTCAAGTAGGCCAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCCCAAGACCAGGGCTCTCCTCCCATTGATGGTCAAGTAGGCCAT  607

seq1  CCTCTGCTACATATGCAACTAGATACATAGTTCTGGAGGGGGAGGATACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTACATATGCAACTAGATACATAGTTCTGGAGGGGGAGGATACT  657

seq1  GGTTAGTTCATATTGTTGTTCTTCCTATAGGGTTGCAGTCACCTTTAGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTTCATATTGTTGTTCTTCCTATAGGGTTGCAGTCACCTTTAGCT  707

seq1  CCTTGGGTTCTTTCTCTACCCCCTTCATTGAGGGCCCTGTGTTCCATCCG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGTTCTTTCTCTACCCCCTTCATTGAGGGCCCTGTGTTCCATCCG  757

seq1  ATAGATGATTGTGAGCATACACTTCTGTATTTGCCAGGCACTGGCATAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGATTGTGAGCATACACTTCTGTATTTGCCAGGCACTGGCATAGC  807

seq1  CACTGGGATTAATTAATTAATATGCCATAGCACTAGCATAGCCTCACAAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGATTAATTAATTAATATGCCATAGCACTAGCATAGCCTCACAAG  857

seq1  AGATAGTTATATCAGGGTCCTGTCAGCATCCACAAAGTTAATTTTAAAGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTTATATCAGGGTCCTGTCAGCATCCACAAAGTTAATTTTAAAGC  907

seq1  ATCTAGAATGAATCAAATATATTTTTTATTTTTGTACACACAGAAACACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAATGAATCAAATATATTTTTTATTTTTGTACACACAGAAACACA  957

seq1  CACACACATGTTAATCTGTCTATACTGCCATGGCAAGGTATAGTGAACCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATGTTAATCTGTCTATACTGCCATGGCAAGGTATAGTGAACCC  1007

seq1  AGTGGCTTATAAATAGTAAAGTTTACTTGTCACCGATCTGAAATCTGGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTTATAAATAGTAAAGTTTACTTGTCACCGATCTGAAATCTGGAA  1057

seq1  AGCCCCAGATCAAGCACTGGCAGATGTGCTGTCTTTCAAGGGCTGACAAC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCAGATCAAGCACTGGCAGATGTGCTGTCTTTCAAGGGCTGACAAC  1107

seq1  ATTGTTCACATTCATTTTCAGCTGTGTTTATTTTCTAGGATAGATGAGAG  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCACATTCATTTTCAGCTGTGTTTATTTTCTAGGATAGATGAGAG  1157

seq1  AGGTTGTTCTTTTCTGGCACAAGGAAATCATTTCCATTCTTGAAAACTTG  1248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTTCTTTTCTGGCACAAGGAAATCATTTCCATTCTTGAAAACTTG  1207

seq1  GGCTATGCTGCCTAGCAAGAATTC  1272
      ||||||||||||||||||||||||
seq2  GGCTATGCTGCCTAGCAAGAATTC  1231

seq1: chr3_73331593_73332757
seq2: B6Ng01-158G06.g_68_1202

seq1  GAATTCCTTTTTAAACATTTATATGATTTGGTGGGTGCCAAGCACACATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTTAAACATTTATATGATTTGGTGGGTGCCAAGCACACATC  50

seq1  TGCAGGAGTCCTTTATCTCATTCTGCCATGTGGGTCATGGGGATGGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAGTCCTTTATCTCATTCTGCCATGTGGGTCATGGGGATGGAACT  100

seq1  CGGGTCCTCAGGCTTGGCGCCAAGCACCTTAACCCCTTGAGTCATCTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTCCTCAGGCTTGGCGCCAAGCACCTTAACCCCTTGAGTCATCTCAC  150

seq1  AAGCCCGAAACAATGGAGCTGTTAAAACCTCATCAGCACACATGAAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCGAAACAATGGAGCTGTTAAAACCTCATCAGCACACATGAAACAA  200

seq1  TGAATGACTGGATAACTAACGCAGATTGTCTTCTGCTGACAATATCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGACTGGATAACTAACGCAGATTGTCTTCTGCTGACAATATCATCT  250

seq1  AGTTTGAATTAAAGGCTTTGTATTCATTTATATTTGTCCCTTTGGGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAATTAAAGGCTTTGTATTCATTTATATTTGTCCCTTTGGGGACA  300

seq1  CATAAAATATTTTGTGAGTGGGCTTTGACATTGTTTACTCTAAAGTGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATATTTTGTGAGTGGGCTTTGACATTGTTTACTCTAAAGTGTTA  350

seq1  GTTCTACACCAAATGTCCCAGGTAACTTTCAATTCCATTTTATTTAAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACACCAAATGTCCCAGGTAACTTTCAATTCCATTTTATTTAAGGT  400

seq1  GAGACTTTATTTCTTTAATAAGTAAATTAGAAAGTTTTCTATAGTCATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTTATTTCTTTAATAAGTAAATTAGAAAGTTTTCTATAGTCATGG  450

seq1  CTTAATTTGGTTTTAAACTCTTAAATATTTTTAAATTACAACCTTAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTTGGTTTTAAACTCTTAAATATTTTTAAATTACAACCTTAAATT  500

seq1  GTTTGTGACCAAATTTGCTAGCAACACTGCTTGTAGATAGGGAGGTAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGACCAAATTTGCTAGCAACACTGCTTGTAGATAGGGAGGTAATC  550

seq1  TACAAATGAAAAGCCCCACTGTGCTGGGAGTGCAGGGGATATTTACTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATGAAAAGCCCCACTGTGCTGGGAGTGCAGGGGATATTTACTGCC  600

seq1  AGGAAGAATATATTGTTACTCTGACCTTCAGGGCAATTGCTGCATAAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAATATATTGTTACTCTGACCTTCAGGGCAATTGCTGCATAAGGG  650

seq1  AGACCCCAAATTTCCAACACACAGCAGAAACCGAGACTGAGGGAGCCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCCAAATTTCCAACACACAGCAGAAACCGAGACTGAGGGAGCCAAC  700

seq1  GATCAAAGGAAATTTTATTTTTACTCTTTTTCTATTTGTAACAAATCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAGGAAATTTTATTTTTACTCTTTTTCTATTTGTAACAAATCTAC  750

seq1  CCAGAGCTAACAAAAACATTGACTTTTAGTTAATATTAAAATCATTTCCT  800
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCAGAGCTAACAAAAACATTGACTTTTAGTTAATATT-AAATCATTTCCT  799

seq1  TGAAAGAAGATGATTAAAAGAAGGCAGAAAAGAGAGTAATACAAAGAATG  850
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGAAGATGATTAAAAGAAGGCAGAAAAGAGAGTAATACAAAGAATG  849

seq1  GTGTATTTGCTCACAAAGAAAATGTCTTCACATCCTGTAAATCTGTTACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTTGCTCACAAAGAAAATGTCTTCACATCCTGTAAATCTGTTACT  899

seq1  GTAGCTCTGCTGCTGAGACATAGGAAAAAGGAGTGGTTTTCTGTTCTGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTCTGCTGCTGAGACATAGGAAAAAGGAGTGGTTTTCTGTTCTGGT  949

seq1  TTCCAAAGGGCTTTGGAAGGGCGGGGCATGGGCATGAATGCAGCCATTTA  1000
      |||  |||||| |||| ||||| |||||||||||||||||||| ||||||
seq2  TTC--AAGGGCCTTGG-AGGGC-GGGCATGGGCATGAATGCAG-CATTTA  994

seq1  AGAAATTTTTTTAAATTGAAAGCATTCTTAATTATTTCTTTTACTTTAAA  1050
      ||||| |||||||||||| |||||||||||  |||||| |||||||| ||
seq2  AGAAA-TTTTTTAAATTG-AAGCATTCTTA--TATTTC-TTTACTTT-AA  1038

seq1  GAAATTAAAATTTTTGTTTGTAAATAGTAATTGGAAATGTGAAATATTAT  1100
      ||    | ||||||||||||| |||||| ||||  |||||||||| ||  
seq2  GA----ATAATTTTTGTTTGT-AATAGT-ATTG--AATGTGAAATTTT--  1078

seq1  ACTTTAAAAATTATAGTCATTAATTGATCTGTATGCATATTTTGTGACTT  1150
       |||  |||||   ||||||||  ||||||| ||||||||||||| ||||
seq2  -CTT--AAAATATAAGTCATTA--TGATCTG-ATGCATATTTTGT-ACTT  1121

seq1  TGCATTTAAATTTCT  1165
      ||||||| |||||||
seq2  TGCATTT-AATTTCT  1135