BAC Information

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BAC

Clone NameB6Ng01-158J09
Chromosome3 (Build37)3 (Build37)
Map Location 151,264,730 - 151,265,860151,302,408 - 151,303,190
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEltd1
Downstream geneIfi44, H28, Ptgfr, LOC100040741, LOC100040597, LOC676548, Gipc2, Dnajb4, Fubp1, Nexn, C030011O14Rik, Usp33, Zzz3, Ak5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158J09.bB6Ng01-158J09.g
ACCDH952494DH952495
length1,120860
definitionDH952494|Mus musculus domesticus DNA, BAC clone: B6Ng01-158J09, 5' end.DH952495|Mus musculus domesticus DNA, BAC clone: B6Ng01-158J09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(151,264,730 - 151,265,860)(151,302,408 - 151,303,190)
sequence
gaattcccttaatgatcaactgtaacctgcaatataagtcaaataaacca
ttttccccaaagttgtttcttcttctaacatttcacagtcatagacataa
agctaacacggttgtatttactgtgcccctttattttgtgtttttattat
tactcctgctctgactttggcatttccttgtctctgaagcaagcacctct
cagaggtctttcttactagtgctcagttgttgtcttactattctgagtaa
tatctagaatatctataatattatcatgtctaaccttaaaacattaaata
ttattagtgtattactcttctcaactaacattgtcttagcatacacaatt
tctctgaactacatggtattgctatgtaagacagccttattttattcctg
aaattacacacaaaaattattttataaaactattatgtttgcatgtttgc
ttacatatttaccaattcatttgctcaccacttcttatacagcagatatt
ttcagagccatttttcttcttcctaaaatgcccatatgatttggaaattt
tcctcatgtggctgtgctgatattaaacatgtactgacatcataatacgt
gtagtcactcatttcagtataagcatgtcaaaatttgcctgcatataaat
tacattagaaaagaattttatcattgaacttctataatattttatcaatt
caatatgaaaatatatatatgaatgagagagactcttatcagatatactt
ttagtgatttaaaagaaacactttaatgctttgagacccaaaacaaagtg
agggatgattgtgttgtgaaactgagagttttctgaaatgacaccatcca
taacataaactatttttattctggttttggttacatagtcttattcaatg
tgagcctgtgtgttgtcaagttgtatgctaatgtaatgtgatttctagac
cagtaaacaagctattttgttggcttttcaataattttctggaatctcag
taatgggaattatttttatctttaagtgattaatatactaatagtattca
gtagtttatatgtcttcctaatacataccacgagagaatgcacaccatgt
attgattcagaacttgtgaa
gaattcagccaatgagacatggggcggggaggagaatgcagttggattca
gccgatgagacatggtgggggggggaggaagacaaatgcagagttttact
cttaatacttcctaacataggtcttatgggtgggattcctgaaatcactc
atgtcttactgtatgtcacattagttcataaataaattcccttagattgc
acaatgtggttttaaaatctatccttgtgccacagtgtatgtgtgtttct
ctttccattatcttaaggcaagaaacacaccccgcaccctctagaataaa
tattcctgggccaacttttaccagaagattgctggtgcttgattcatgat
actgtcactatgatgaagcgtcatgatccaaagcaacttatgaagaaaaa
gtttattttgtcttttcgttaaaaggggaatgaaaccactgtggaggggt
tggcagtagttgaagaaaatgaggtgaaaggaacagggaacaaactgatc
tcattttcatccacataacagaaatccagagaggagacaggaaaagggag
agtctataaacccaccaaagcccctccccccaccccccacccccccccca
cacaggtcattgccatacttcctttcttaaggctccacctcttaaaggca
ctgcaactctgcttagtattgccaccaactgggggaccaagtgtttcaaa
ggaatgacactattaaggacaattctcaatgaaacctccgcttccgatgt
taacatgcttcagaatggtcataagtttttaatgctgattgaattgtttt
ctgttatctctaccctataataaataaaaggagataggagatggctgaat
tgggtaagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_151264730_151265860
seq2: B6Ng01-158J09.b_46_1165

seq1  GAATTCCCTTAATGATCAACTGTAACCTGCAATATAAGTCAAATAAACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTAATGATCAACTGTAACCTGCAATATAAGTCAAATAAACCA  50

seq1  TTTTCCCCAAAGTTGTTTCTTCTTCTAACATTTCACAGTCATAGACATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCCAAAGTTGTTTCTTCTTCTAACATTTCACAGTCATAGACATAA  100

seq1  AGCTAACACGGTTGTATTTACTGTGCCCCTTTATTTTGTGTTTTTATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAACACGGTTGTATTTACTGTGCCCCTTTATTTTGTGTTTTTATTAT  150

seq1  TACTCCTGCTCTGACTTTGGCATTTCCTTGTCTCTGAAGCAAGCACCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTGCTCTGACTTTGGCATTTCCTTGTCTCTGAAGCAAGCACCTCT  200

seq1  CAGAGGTCTTTCTTACTAGTGCTCAGTTGTTGTCTTACTATTCTGAGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTCTTTCTTACTAGTGCTCAGTTGTTGTCTTACTATTCTGAGTAA  250

seq1  TATCTAGAATATCTATAATATTATCATGTCTAACCTTAAAACATTAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAGAATATCTATAATATTATCATGTCTAACCTTAAAACATTAAATA  300

seq1  TTATTAGTGTATTACTCTTCTCAACTAACATTGTCTTAGCATACACAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGTGTATTACTCTTCTCAACTAACATTGTCTTAGCATACACAATT  350

seq1  TCTCTGAACTACATGGTATTGCTATGTAAGACAGCCTTATTTTATTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAACTACATGGTATTGCTATGTAAGACAGCCTTATTTTATTCCTG  400

seq1  AAATTACACACAAAAATTATTTTATAAAACTATTATGTTTGCATGTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACACACAAAAATTATTTTATAAAACTATTATGTTTGCATGTTTGC  450

seq1  TTACATATTTACCAATTCATTTGCTCACCACTTCTTATACAGCAGATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATATTTACCAATTCATTTGCTCACCACTTCTTATACAGCAGATATT  500

seq1  TTCAGAGCCATTTTTCTTCTTCCTAAAATGCCCATATGATTTGGAAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGCCATTTTTCTTCTTCCTAAAATGCCCATATGATTTGGAAATTT  550

seq1  TCCTCATGTGGCTGTGCTGATATTAAACATGTACTGACATCATAATACGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATGTGGCTGTGCTGATATTAAACATGTACTGACATCATAATACGT  600

seq1  GTAGTCACTCATTTCAGTATAAGCATGTCAAAATTTGCCTGCATATAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCACTCATTTCAGTATAAGCATGTCAAAATTTGCCTGCATATAAAT  650

seq1  TACATTAGAAAAGAATTTTATCATTGAACTTCTATAATATTTTATCAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAGAAAAGAATTTTATCATTGAACTTCTATAATATTTTATCAATT  700

seq1  CAATATGAAAATATATATATGAATGAGAGAGACTCTTATCAGATATACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGAAAATATATATATGAATGAGAGAGACTCTTATCAGATATACTT  750

seq1  TTAGTGATTTAAAAGAAACACTTTAATGCTTTGAGACCCAAAACAAAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGATTTAAAAGAAACACTTTAATGCTTTGAGACCCAAAACAAAGTG  800

seq1  AGGGATGATTGTGTTGTGAAACTGAGAGTTTTCTGAAATGACACCATCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGATTGTGTTGTGAAACTGAGAGTTTTCTGAAATGACACCATCCA  850

seq1  TAACATAAACTATTTTTATTCTGGTTTTGGTTACATAGTCTCATTCAATG  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TAACATAAACTATTTTTATTCTGGTTTTGGTTACATAGTCTTATTCAATG  900

seq1  TGAAGCCTGTGTGTTGTCAAGGTGGTATGCTAATGTAATGTGATTTCTAA  950
      || ||||||||||||||||| || |||||||||||||||||||||||| |
seq2  TG-AGCCTGTGTGTTGTCAA-GTTGTATGCTAATGTAATGTGATTTCT-A  947

seq1  GACCAGTAAAACAAGCTAATTTTGTTGGCTTTTCAATAATATTTCTTGGA  1000
      ||||||| ||||||||| |||||||||||||||||||||| |||| ||||
seq2  GACCAGT-AAACAAGCT-ATTTTGTTGGCTTTTCAATAAT-TTTC-TGGA  993

seq1  ATCTCAGTAATTGGGAATTATTTTTATCTTTAAGTGATTAATATAACTAA  1050
      |||||||||| ||||||||||||||||||||||||||||||||| ||| |
seq2  ATCTCAGTAA-TGGGAATTATTTTTATCTTTAAGTGATTAATAT-ACT-A  1040

seq1  ATAGTATTCAGTAGTTTTAATATGTCTTCAT-ATACATACACAGAGAG-A  1098
      |||||||||||||||||  |||||||||| | ||||||||   ||||| |
seq2  ATAGTATTCAGTAGTTT--ATATGTCTTCCTAATACATACCACGAGAGAA  1088

seq1  TGCACACACATGTA-TGATTCAAGAACATGTGAA  1131
      ||||||| |||||| |||||| ||||| ||||||
seq2  TGCACAC-CATGTATTGATTC-AGAACTTGTGAA  1120

seq1: chr3_151302408_151303190
seq2: B6Ng01-158J09.g_143_923

seq1  AGACAAATGCAGAGTTTTACTCTTAATACTTCCTAACATAGGTCTTATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAATGCAGAGTTTTACTCTTAATACTTCCTAACATAGGTCTTATGG  50

seq1  GTGGGATTCCTGAAATCACTCATGTCTTACTGTATGTCACATTAGTTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGATTCCTGAAATCACTCATGTCTTACTGTATGTCACATTAGTTCAT  100

seq1  AAATAAATTCCCTTAGATTGCACAATGTGGTTTTAAAATCTATCCTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATTCCCTTAGATTGCACAATGTGGTTTTAAAATCTATCCTTGTG  150

seq1  CCACAGTGTATGTGTGTTTCTCTTTCCATTATCTTAAGGCAAGAAACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTGTATGTGTGTTTCTCTTTCCATTATCTTAAGGCAAGAAACACA  200

seq1  CCCCGCACCCTCTAGAATAAATATTCCTGGGCCAACTTTTACCAGAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCACCCTCTAGAATAAATATTCCTGGGCCAACTTTTACCAGAAGAT  250

seq1  TGCTGGTGCTTGATTCATGATACTGTCACTATGATGAAGCGTCATGATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTGCTTGATTCATGATACTGTCACTATGATGAAGCGTCATGATCC  300

seq1  AAAGCAACTTATGAAGAAAAAGTTTATTTTGTCTTTTCGTTAAAAGGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAACTTATGAAGAAAAAGTTTATTTTGTCTTTTCGTTAAAAGGGGA  350

seq1  ATGAAACCACTGTGGAGGGGTTGGCAGTAGTTGAAGAAAATGAGGTGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACCACTGTGGAGGGGTTGGCAGTAGTTGAAGAAAATGAGGTGAAA  400

seq1  GGAACAGGGAACAAACTGATCTCATTTTCATCCACATAACAGAAATCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGGGAACAAACTGATCTCATTTTCATCCACATAACAGAAATCCAG  450

seq1  AGAGGAGACAGGAAAAGGGAGAGTCTATAAACCCACCAAAGCCCCTCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGACAGGAAAAGGGAGAGTCTATAAACCCACCAAAGCCCCTCCCC  500

seq1  CCACCCCCCACCCCCCCCCCACACAGGTCATTGCCATACTTCCTTCATCA  550
      |||||||||||||||||||||||||||||||||||||||||||||  | |
seq2  CCACCCCCCACCCCCCCCCCACACAGGTCATTGCCATACTTCCTTTCTTA  550

seq1  AGGCTCCACCTCTTAAAGGCACTGCAACTCTGCCTAGTATTGCCACCAAC  600
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGGCTCCACCTCTTAAAGGCACTGCAACTCTGCTTAGTATTGCCACCAAC  600

seq1  T-GGGGACCAAGTG-TTCAAAGGAATGACACTATGAAGGACAATTCTCAA  648
      | |||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  TGGGGGACCAAGTGTTTCAAAGGAATGACACTATTAAGGACAATTCTCAA  650

seq1  TGAAACCTCCGCTTCCGATGTTAACATGCTTCTAGAATGGTCATAAGTTT  698
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGAAACCTCCGCTTCCGATGTTAACATGCTTC-AGAATGGTCATAAGTTT  699

seq1  TTAAATGCTGATTGAATTGCTTTTCTGTTATCTCTACCCTAAAATAAATA  748
      || |||||||||||||||| ||||||||||||||||||||| ||||||| 
seq2  TT-AATGCTGATTGAATTG-TTTTCTGTTATCTCTACCCTATAATAAAT-  746

seq1  AAAAGGAGACATGGAGATGGCTG-AGTGGGTAAGCA  783
      ||||||||| | ||||||||||| | ||||||||||
seq2  AAAAGGAGATA-GGAGATGGCTGAATTGGGTAAGCA  781