BAC Information

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BAC

Clone NameB6Ng01-158K23
Chromosome3 (Build37)3 (Build37)
Map Location 41,059,224 - 41,059,737158,441,785 - 158,442,949
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158K23.bB6Ng01-158K23.g
ACCDH952569DH952570
length9181,137
definitionDH952569|Mus musculus domesticus DNA, BAC clone: B6Ng01-158K23, 5' end.DH952570|Mus musculus domesticus DNA, BAC clone: B6Ng01-158K23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,224 - 41,059,737)(158,441,785 - 158,442,949)
sequence
gaattctttgtttagctctgagccccatttttgaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaaggtcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaagctttgcagtttca
caaggtcctatttgtcaatgcttgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccgggtccatatcttcaagacttttccccactt
tctcttctataagtttcagtgttctggttttctgtggagttccttgatcc
aattagttttgaccttagtacaaggagataggaatggattgatttgattc
gcattcttctgcatgataaccaccagttgtgctagcaccatttgttgaaa
atgctgtctttcttccactggatggttttagctgccttgccaaagatcaa
gtgaccataggtgtgtgggttcatttctgggtcttcaattctattccatt
ggtctacttgtctgtcactataccagtaccatgccgtttttatcacaatt
gctctgtagtaaagctttaggtcaggcatggtgattccaccagaggttct
tttatccttaagaagactttttgctatcctaggttttttgttattccaga
tgaatttgcagattgcactttctaattcgttgaagaattgagttggaatt
ttgatggggattgcattgaatctgtagattgcttttggcaagatagcctt
ttttacaatgttgatcctgccaatccatgagcatgggagatctttctatc
ttatgagatcttctttaatttctttcttcagagacttgaagttcttatca
tacatatctttcacttcc
gaattcattttgttttttattgaattatttctattcacaaagtagaatct
agaaaccttgttatgatattttgagtttcatttggcacctgagttaattg
gccaacagtgacagcaaagtgtctgtgcagagggaactaatataaaacca
agaatataaaatcaaagtgtctgcttaggaaagaaatggtatcaaaacag
tattctaaataacatactcatgtaaaagcagcaggaagctagtggtcaga
ggctgcctggaaaccacattaatcaccattctatttgaaccttcaagggt
catgctagcttgccacatcaatatgttctaaatagatgacatctctgcca
gggagcctaggagatcagattatatcagtgtcctcactgaaataaagaac
acccacagctcccagatgggagtctttcttccctcattttagagaacttt
ttaaattatattggctgcagagtattaatgatctaagtttgtagaggcat
tttaaatagaaacttaaagtcacttggaaaagagtagaatttaagcaaaa
ctttcattacaaagagtaattcctacaaggtacaatcctgaacctcatag
gaacaatgtatccagattacctatgaggaatgtatgataagcaaagtagt
gtaaaggcacttaggaaataggtaagttatagcacatctgacaagtcaat
tctcaggtccagcatggaagtacatgcctctaagaacctgggaggagcag
ggcagggggagggtatagggaacttttgggatagcatttgaaatgtaaat
aaggaaaatatctaataataaaaaaaaggaggtcacatatttgccaaaag
taggaaaggaaaagctcttgaatagaaaactagtggttcttaatatagtg
cacagcagatttgttgaggaagagtcactgacgcctaaactgtgttacca
gaatgttttgtggttttttttttctgttaaacatgcattagattgggcca
cttctagttaattccttgacacctaataagtcattattcattataaccta
ctctaataaaaagatttatttttttacatatagtacatgttaccagtagt
gtaggcagtcaacccaatgacgcatcctgtatcacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059224_41059737
seq2: B6Ng01-158K23.b_49_565 (reverse)

seq1  CCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCA  50
      |||||||||||||||||||||||||| | ||||| |||||||||||||||
seq2  CCACACACCTATGGTCACTTGATCTTTGGCAAGGCAGCTAAAACCATCCA  50

seq1  GTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGT  100
      |||||| |||||||||||||||||||||||||||| ||||||||||| ||
seq2  GTGGAAGAAAGACAGCATTTTCAACAAATGGTGCTAGCACAACTGGTGGT  100

seq1  TATCATGTAGAAGAATGCG-----AATTGATCCACTCCTATCTCCTTGTA  145
      ||||||| |||||||||||     |||  ||||| |||||||||||||||
seq2  TATCATGCAGAAGAATGCGAATCAAATCAATCCATTCCTATCTCCTTGTA  150

seq1  CTAAGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACA  195
      ||||||||||| |||| ||||||||||||| ||||| ||||||||| |||
seq2  CTAAGGTCAAAACTAATTGGATCAAGGAACTCCACAGAAAACCAGA-ACA  199

seq1  CTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCAC  245
      |||||||||||||| ||||||||||||||||| |||||||||||||  ||
seq2  CTGAAACTTATAGAAGAGAAAGTGGGGAAAAGTCTTGAAGATATGG--AC  247

seq1  AGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGA  295
        |||||||||||||| ||||||||||||||||||||||||||||||  |
seq2  CCGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCAA  297

seq1  GAATAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAA  345
      | || ||||||| ||||||  |||||||||||||||||||||||||||||
seq2  GCATTGACAAATAGGACCTTGTGAAACTGCAAAGCTTCTGCAAGGCAAAA  347

seq1  GACACCGTCAATAAGACAAAAAG-GCACCAACAGATTGGGAAAGGATCTT  394
      |||||||||||||||||||||||  ||||||||||||||||||||| |||
seq2  GACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGACCTT  397

seq1  TACCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAAC  444
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TACCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAAC  447

seq1  TCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGC  494
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  TCAAGAAGGTGGACTCCAGAAAATCAAATAACCCCATTCAAAAATGGGGC  497

seq1  TCAGAGCTAAACAAAGAATT  514
      ||||||||||||||||||||
seq2  TCAGAGCTAAACAAAGAATT  517

seq1: chr3_158441785_158442949
seq2: B6Ng01-158K23.g_68_1204

seq1  GAATTCATTTTGTTTTTTATTGAATTATTTCTATTCACAAAGTAGAATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTGTTTTTTATTGAATTATTTCTATTCACAAAGTAGAATCT  50

seq1  AGAAACCTTGTTATGATATTTTGAGTTTCATTTGGCACCTGAGTTAATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTTGTTATGATATTTTGAGTTTCATTTGGCACCTGAGTTAATTG  100

seq1  GCCAACAGTGACAGCAAAGTGTCTGTGCAGAGGGAACTAATATAAAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAGTGACAGCAAAGTGTCTGTGCAGAGGGAACTAATATAAAACCA  150

seq1  AGAATATAAAATCAAAGTGTCTGCTTAGGAAAGAAATGGTATCAAAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATAAAATCAAAGTGTCTGCTTAGGAAAGAAATGGTATCAAAACAG  200

seq1  TATTCTAAATAACATACTCATGTAAAAGCAGCAGGAAGCTAGTGGTCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAAATAACATACTCATGTAAAAGCAGCAGGAAGCTAGTGGTCAGA  250

seq1  GGCTGCCTGGAAACCACATTAATCACCATTCTATTTGAACCTTCAAGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCTGGAAACCACATTAATCACCATTCTATTTGAACCTTCAAGGGT  300

seq1  CATGCTAGCTTGCCACATCAATATGTTCTAAATAGATGACATCTCTGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTAGCTTGCCACATCAATATGTTCTAAATAGATGACATCTCTGCCA  350

seq1  GGGAGCCTAGGAGATCAGATTATATCAGTGTCCTCACTGAAATAAAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCTAGGAGATCAGATTATATCAGTGTCCTCACTGAAATAAAGAAC  400

seq1  ACCCACAGCTCCCAGATGGGAGTCTTTCTTCCCTCATTTTAGAGAACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAGCTCCCAGATGGGAGTCTTTCTTCCCTCATTTTAGAGAACTTT  450

seq1  TTAAATTATATTGGCTGCAGAGTATTAATGATCTAAGTTTGTAGAGGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTATATTGGCTGCAGAGTATTAATGATCTAAGTTTGTAGAGGCAT  500

seq1  TTTAAATAGAAACTTAAAGTCACTTGGAAAAGAGTAGAATTTAAGCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAGAAACTTAAAGTCACTTGGAAAAGAGTAGAATTTAAGCAAAA  550

seq1  CTTTCATTACAAAGAGTAATTCCTACAAGGTACAATCCTGAACCTCATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTACAAAGAGTAATTCCTACAAGGTACAATCCTGAACCTCATAG  600

seq1  GAACAATGTATCCAGATTACCTATGAGGAATGTATGATAAGCAAAGTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATGTATCCAGATTACCTATGAGGAATGTATGATAAGCAAAGTAGT  650

seq1  GTAAAGGCACTTAGGAAATAGGTAAGTTATAGCACATCTGACAAGTCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGCACTTAGGAAATAGGTAAGTTATAGCACATCTGACAAGTCAAT  700

seq1  TCTCAGGTCCAGCATGGAAGTACATGCCTCTAAGAACCTGGGAGGAGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGTCCAGCATGGAAGTACATGCCTCTAAGAACCTGGGAGGAGCAG  750

seq1  GGCAGGGGGAGGGTATAGGGAACTTTTGGGATAGCATTTGAAATGTAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGGGAGGGTATAGGGAACTTTTGGGATAGCATTTGAAATGTAAAT  800

seq1  AAGGAAAATATCTAATAATAAAAAAAAGGAGGTCACATATTTGCCAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAGGAAAATATCTAATAATAAAAAAAAGGAGGTCACATATTTGCC-AAAA  849

seq1  GTAGGAAAGGAAAAGCTCTTGAATAGAAAAACTAGTGGTTCTTAATATAG  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTAGGAAAGGAAAAGCTCTTGAATAG-AAAACTAGTGGTTCTTAATATAG  898

seq1  TGCCACAGCAGGATTTGTTGAGGAAGAAGTCACTGAAGGCCTAAAACTGT  950
      || ||||||| ||||||||||||||| |||||||| | |||| |||||||
seq2  TG-CACAGCA-GATTTGTTGAGGAAG-AGTCACTG-ACGCCT-AAACTGT  943

seq1  GTTACCAGAATGTTTTTGTGGTTTTTTTTTTCTGTTTTAAACATGCATTA  1000
      |||||||||||| |||||||||||||||||||||  ||||||||||||||
seq2  GTTACCAGAATG-TTTTGTGGTTTTTTTTTTCTG--TTAAACATGCATTA  990

seq1  GATTTGGCCAC-TCTAGGTATAATTCCTTTGACAACTAAATAAGTCATTA  1049
      |||| |||||| |||||   ||||||| |||||| || ||||||||||||
seq2  GATTGGGCCACTTCTAG--TTAATTCC-TTGACACCT-AATAAGTCATTA  1036

seq1  -TCATTATAAACCTACTCCTAATTAAAAAGAATTTATTTTTTAACAATTA  1098
       ||||||| |||||||| |||| ||||||| ||||||||||| |||  ||
seq2  TTCATTAT-AACCTACT-CTAA-TAAAAAG-ATTTATTTTTTTACATATA  1082

seq1  TGTACATGTATACAATGTATGTTAAGCCATGTCCAACCCCAATGCACCCA  1148
       |||||||| ||| | ||| ||  || || |||  | ||||||| || ||
seq2  -GTACATGT-TACCA-GTA-GTGTAGGCA-GTC--AACCCAATG-ACGCA  1124

seq1  CATTCCTGTATCCACCT  1165
         |||||||| |||||
seq2  ---TCCTGTAT-CACCT  1137