BAC Information

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BAC

Clone NameB6Ng01-158P18
Chromosome1 (Build37)3 (Build37)
Map Location 61,720,628 - 61,721,25298,711,591 - 98,712,517
singlet/doubletsingletsinglet
Overlap genePard3b
Upstream geneEif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
Downstream geneLOC667592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-158P18.bB6Ng01-158P18.g
ACCDH952783DH952784
length9871,107
definitionDH952783|Mus musculus domesticus DNA, BAC clone: B6Ng01-158P18, 5' end.DH952784|Mus musculus domesticus DNA, BAC clone: B6Ng01-158P18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,720,628 - 61,721,252)(98,711,591 - 98,712,517)
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagaagatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcatatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aatgagatcttctttgaaggtctgattgaaaactctgcactaaacccgtc
cggtcctgggctttttttggctgggagactattaataactgcttctattt
ctttaggggatatgggactgtttagatggtcaacttaatcctgattcaac
tttggtacctggtatctgtccataaatttgtccatttcgtccaggttttc
cagttttgttgagtatagccttttgtagatggatctgatggtgttttgga
tttcttcaggatctgttgttatgtctcccttttcatttctgattttgtta
attaggattttgtccctgtgccctctagtgagtctagctaagggtttatc
tatcttggtgattttctcaaagaaccaactcctcgtttggttaattcttt
gaatagttcttcttgttgccacttggttgatttcacccctgagtttgatt
atttcctgccttctactcctcttgggtgaatttgcttcctttttttctag
agcttttagatgtgttgtcagctctagtatgtgctctttcccgtttcttc
ttggaggcactcagagctatgagtttccctcttagaa
gaattcaatttagcatcaagaatagacatcacctcaggataaaaaagatg
aaaaaaagatttttcaggtaaatggacctcctaggaaatatactgtagtc
attttaatatctgacaaaatctagacatcaaaccaaaacagaagaggtag
ataaagacactacctattcttcaagtgaaaaaagaaaatccaccaaaagg
acacttcaattcctttttaattttttttattttattggttattttattca
tttccatttcaaatgttatcccctttcccactgaaactccccatcacctc
cccagccctactgataattttctcaattcataccacctacaaagttaatt
caagattagtcaaacaatttaaacatacctctaacccctagtgaaatcaa
agtagacactaaaagcttgccaaccaaaaaaggtcatgaccatatagttt
tagtgctgaattctagtagactttcaaagaattaatgccaatatgcctta
aattattccacaaaatagaaaagaaggaagattgcccaggtcattttatg
aggacacagttattttaatactcaagccacacataaagattaaacaaaga
aagaatttcagaaaaatttttaatgaatgcaaaatttttcaatagattat
ttatcaaatcttaaagacatgtcaaaaagatcatccatcatgatcaacta
tgtccaataagactctggagccagcggcatggtactggtataatgacaga
aaagtagaccattggaatagaattgaagatccagaaatgaacccacacac
ctctggtcacttgatcttggacaagggagctaaaaccatccagtggaaaa
aagacagcattttcaacaaatggtgctggcacaactggtggttatcatgt
agaagaatgtgaattgatccattcctatctccttgtactaaggtaaatct
aagtgatctagagctccacataaaaccagagacactgaaactatagagag
aaagtggggaaaagctcaagatattgcacaggggaaaatctgaatagaac
agcatggcctgtgctgtagatcggatcgataatggactcatgaactgcag
ctctgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_61720628_61721252
seq2: B6Ng01-158P18.b_49_675 (reverse)

seq1  TACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAA  50

seq1  ATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACC  100
      |||| ||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATTTATGGACAGATACCAGGTACCAAAGTTGAATCAGGATTAAGTTGACC  100

seq1  ATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGT  150
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGT  150

seq1  CTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAG--TTC  198
      |||||| ||||||||||||||||||| || |||||||||||||||  |||
seq2  CTCCCAGCCAAAAAAAGCCCAGGACCGGACGGGTTTAGTGCAGAGTTTTC  200

seq1  TATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCA  248
       |||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  AATCAGACCTTCAAAGAAGATCTCATTCCAGTTCTGCACAAACTATTTCA  250

seq1  CAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTA  300

seq1  TTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTC  350

seq1  AGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCT  400

seq1  CGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAG  450

seq1  TAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATC  498
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATATGAAAATCCATC  500

seq1  AATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCAT  548
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AATGTAATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCTT  550

seq1  CTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGA  600

seq1  TAAAAGTTTTGGAAAGATCAGGAATTC  625
      |||||||||||||||||||||||||||
seq2  TAAAAGTTTTGGAAAGATCAGGAATTC  627

seq1: chr3_98711591_98712517
seq2: B6Ng01-158P18.g_269_1173

seq1  ACTTCAATTCCTTTTTAATTTTTTTTATTTTATTGGTTATTTTATTCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAATTCCTTTTTAATTTTTTTTATTTTATTGGTTATTTTATTCATT  50

seq1  TCCATTTCAAATGTTATCCCCTTTCCCACTGAAACTCCCCATCACCTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTCAAATGTTATCCCCTTTCCCACTGAAACTCCCCATCACCTCCC  100

seq1  CAGCCCTACTGATAATTTTCTCAATTCATACCACCTACAAAGTTAATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTACTGATAATTTTCTCAATTCATACCACCTACAAAGTTAATTCA  150

seq1  AGATTAGTCAAACAATTTAAACATACCTCTAACCCCTAGTGAAATCAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGTCAAACAATTTAAACATACCTCTAACCCCTAGTGAAATCAAAG  200

seq1  TAGACACTAAAAGCTTGCCAACCAAAAAAGGTCATGACCATATAGTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACTAAAAGCTTGCCAACCAAAAAAGGTCATGACCATATAGTTTTA  250

seq1  GTGCTGAATTCTAGTAGACTTTCAAAGAATTAATGCCAATATGCCTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAATTCTAGTAGACTTTCAAAGAATTAATGCCAATATGCCTTAAA  300

seq1  TTATTCCACAAAATAGAAAAGAAGGAAGATTGCCCAGGTCATTTTATGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCACAAAATAGAAAAGAAGGAAGATTGCCCAGGTCATTTTATGAG  350

seq1  GACACAGTTATTTTAATACTCAAGCCACACATAAAGATTAAACAAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAGTTATTTTAATACTCAAGCCACACATAAAGATTAAACAAAGAAA  400

seq1  GAATTTCAGAAAAATTTTTAATGAATGCAAAATTTTTCAATAGATTATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCAGAAAAATTTTTAATGAATGCAAAATTTTTCAATAGATTATTT  450

seq1  ATCAAATCTTAAAGACATGTCAAAAAGATCATCCATCATGATCAACTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATCTTAAAGACATGTCAAAAAGATCATCCATCATGATCAACTATG  500

seq1  TCCAATAAGACTCTGGAGCCAGCGGCATGGTACTGGTATAATGACAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATAAGACTCTGGAGCCAGCGGCATGGTACTGGTATAATGACAGAAA  550

seq1  AGTAGACCATTGGAATAGAATTGAAGATCCAGAAATGAACCCACACACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGACCATTGGAATAGAATTGAAGATCCAGAAATGAACCCACACACCT  600

seq1  CTGGTCACTTGATCTTGGACAAGGGAGCTAAAACCATCCAGTGGAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCACTTGATCTTGGACAAGGGAGCTAAAACCATCCAGTGGAAAAAA  650

seq1  GACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTGGTTATCATGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTGGTTATCATGTAG  700

seq1  AAGAATGTGAATTGATCCATTCCTATCTCCTTGTACTAAGGTAAAATCTA  750
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAGAATGTGAATTGATCCATTCCTATCTCCTTGTACTAAGGT-AAATCTA  749

seq1  AGTGGATCTAGGAGCTCCACATAAAACCAGAGACACTGAAACTTATAGAG  800
      ||| |||||| ||||||||||||||||||||||||||||||| |||||| 
seq2  AGT-GATCTA-GAGCTCCACATAAAACCAGAGACACTGAAAC-TATAGA-  795

seq1  GAGAAAGTGGGGAAAAGCCTCAAAGATATTGGCACAGGGGGAAAATTCCT  850
      ||||||||||||||||| ||| |||||||| ||||| |||||||||  ||
seq2  GAGAAAGTGGGGAAAAG-CTC-AAGATATT-GCACA-GGGGAAAAT--CT  839

seq1  GAATAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATCGATAAATGGG  900
      |||||||||||| ||||| |||||||| |||||  | |||||| ||||| 
seq2  GAATAGAACAGC-ATGGCCTGTGCTGT-AGATC--GGATCGAT-AATGG-  883

seq1  ACCTCATGAAACTGCAAAGCTTCTGTA  927
        |||||| ||||||  ||| ||||||
seq2  -ACTCATG-AACTGC--AGC-TCTGTA  905