BAC Information

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BAC

Clone NameB6Ng01-159A02
Chromosome4 (Build37)3 (Build37)
Map Location 30,006,960 - 30,007,673114,461,551 - 114,462,481
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040907, LOC100040811
Downstream geneLOC665185, LOC619906, LOC100040864
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159A02.bB6Ng01-159A02.g
ACCDH952797DH952798
length1,0091,031
definitionDH952797|Mus musculus domesticus DNA, BAC clone: B6Ng01-159A02, 5' end.DH952798|Mus musculus domesticus DNA, BAC clone: B6Ng01-159A02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(30,006,960 - 30,007,673)(114,461,551 - 114,462,481)
sequence
gaattcacgcagttgaatccttctcaacagtctgttttacgggaacactt
cattaccatgacccgcagttctggttccggaatgagggatcttccttgcg
ctggtgatggtagtttccgtcccaggttttctcgtcccaggtcttctcgt
cccaggtcttctcgtcccaggtcttctcgtcccaggtcttctcgtcccag
gtcttctcgtcccaggtcttctcgtcccaggatttcccttcccgggtctt
ctcgtcccgggtcttctcgtcccgtcccgggtttcggcaccaactcttgc
acgcgttctcgcgaccggccaggaagaacacagcaaaccggaatcttctg
cggcaaagctttattgcttacatcttcaggagccagagagcaagagagca
agtgtcagggcaagagagagaaagaaagcaagaaaaagaacaagaacaag
aaagcaagagagagagcaagagagagaaaaagaacaagagcaagaagaac
aacaagagcaagagagagaaaaagcaagaacatgagagagaaaaagcaag
aacaagagagagaaaaaagcaagaacaagagagagaaaaagcaagaacaa
gagagagaaaaagaatggcaaaaccccgtaaaaagcaagaacaagagaga
gaaaaagcaagaacaagagagagaaaaagaatggcaaaaccccgtccctt
ttaaggagaattatcctccgcctaggacatattactccctgattggctgc
agcccatcggctcagttgtcatcacgagaaaggcagaacacatggcggga
aaactgcccctgcacgtgtgcagattatgtttactacttagaacacagct
gtcagcgccatcttataatggcaaatgtgagggcggctcctcacacactc
caccattgaggtgcatcctcggcctaaatagacattatagagttttttct
tttcttttttagtgagtgacattgcattctgatatattttgaatatttgt
ggaaatatg
gaattccatagaaagaaatgcaccaaaaaagttctggtgatataccaagg
cttcttggcacttctgctgatttgggctgaggcaagacccatggagtaca
tgtgatgtttggagggagtattaaaagtactcaacggacagtgatggggg
ctgagcttggcttacttatagagttaactatacaacacttaccggtatca
aatcttcctgaccttcactttgctgacagatgcacagctgagaacttctg
ggttcctcctgctgatccctgctgatgctgactcatgccacagttgaggc
atggctatctctgctaggtagtggaacagctgctgattcgtgcttgctac
accagctctacagagctggactgctggtatatctgtaaaatgtttatgag
tggatcaagctgccattgctggcctgtgaaataaactacagatttccaga
caacacaaatgggagttgctctaaagatcctttctcaacaggtccactcc
ccaccccccacccccgctaatcctttctttttgactacctctggtgggtg
gtgggttacaagggatgttaaagtgtttaaaaacaatcactagaaataga
cttaaaaaaaaaacttcaagttacagaggacagaaagagacattgagaga
gaaggggagctatttaacttatgacttacttacattatctgatttatgac
ttctggaatttcaaagtaaggcatttgcatagagatacttagaacaaatc
ttcagtgaaagatgaagagggcagttatttgtgattgacattgtcaatct
caatgctcttgaacctcataatcctactacttaaagccatccttccctag
tctctttaaagaactttctgtacttatgttttccccattattctttgttt
tccctgttgtatattggcacagctgacgagaagctattaaagaaatcaca
gagccaattagctgtcatgtttaacattacatgactcctactcccagtag
gttactagtcaactatgtcctttgcatgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_30006960_30007673
seq2: B6Ng01-159A02.b_347_940 (reverse)

seq1  TGTGGGGAGCCGCCCTCACATTTGCCATTACAAGATGGCACTGACAGCTG  50
      |||| ||||||||||||||||||||||||| |||||||| ||||||||||
seq2  TGTGAGGAGCCGCCCTCACATTTGCCATTATAAGATGGCGCTGACAGCTG  50

seq1  TGTTCTAAGTGGTAAACATAATCTGCACACGTGCAGGGGCAGTTTTCCCG  100
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAAGTAGTAAACATAATCTGCACACGTGCAGGGGCAGTTTTCCCG  100

seq1  CCATGTGTTCTGCCTTTCCCGTGATGACAACTGGGACGATGGGCTGCAGC  150
      |||||||||||||||||| |||||||||||||| | ||||||||||||||
seq2  CCATGTGTTCTGCCTTTCTCGTGATGACAACTGAGCCGATGGGCTGCAGC  150

seq1  CAATCAGGAAGTAATACGTCCTAGGCGGAGGATAATTCTCCTTAAAAGGG  200
      |||||||| ||||||| |||||||||||||||||||||||||||||||||
seq2  CAATCAGGGAGTAATATGTCCTAGGCGGAGGATAATTCTCCTTAAAAGGG  200

seq1  ACGGGGTTTTGCCATTCTTTTTCTCTTTCTTGTTCTTGCTTTTTCTCTCT  250
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ACGGGGTTTTGCCATTCTTTTTCTCTCTCTTGTTCTTGCTTTTTCTCTCT  250

seq1  CTTGTTCTTGTTTTTTCTCTCTCTTGTTCTTGCTTTTTCTCTCTCTTGTT  300
      |||||||||| ||||           | |  | |||| |           
seq2  CTTGTTCTTGCTTTT-----------TACGGGGTTTTGC-----------  278

seq1  CTTGTTTTTTCTATCTCTTGTTCTTGCTTTTTCTCTCTCTCTTGTTCTTG  350
      | |  ||||||| ||||||||||||||||||||                 
seq2  CATTCTTTTTCTCTCTCTTGTTCTTGCTTTTTC-----------------  311

seq1  TTTTTTCTCTCTTGTTCTTGCTTTTTCTCTCTCTCTTGTTCTTGCTTTTT  400
           ||||||||||||||||||||| |||||||||||||||||||||||
seq2  -----TCTCTCTTGTTCTTGCTTTTT-TCTCTCTCTTGTTCTTGCTTTTT  355

seq1  CTCTCTCTTGTTCTTGCTTTTTCTCTCTCTTGTTCTTGCTTTTTCTCTCT  450
      ||||||| |||||||||||||||||||||||| |||||            
seq2  CTCTCTCATGTTCTTGCTTTTTCTCTCTCTTGCTCTTG------------  393

seq1  CTTGTTCTTGCTTTTTCTCTCTCTTGTTCTTGCTTTTTCTCTCTCTTGTT  500
       ||||||       ||||  ||||||||    ||||||||||||||||  
seq2  -TTGTTC-------TTCTTGCTCTTGTT----CTTTTTCTCTCTCTTG--  429

seq1  CTTGCTTTTTCTCTCTTCTCTTGCTTTCTTGTTCTTGTTCTTTTTCTCTC  550
                ||||| |||||||||||||||||||||||           
seq2  ----------CTCTC-TCTCTTGCTTTCTTGTTCTTGTT-----------  457

seq1  TCTTGCTTTTTCTTGCTCTTGTTCTTTTCCTCTCTCTTGCTTTCTTGTTC  600
           ||||||||||||    ||||||  |||||||||||          
seq2  -----CTTTTTCTTGCT----TTCTTT--CTCTCTCTTGC----------  486

seq1  TTTTTCTTTCTCTCTCTGGCTCTCTGGCTCTCTGGCTCCTGAAGATGTAA  650
               ||  | || ||||||| ||||||||||||||||||||||||
seq2  --------CCTGACACTTGCTCTCTTGCTCTCTGGCTCCTGAAGATGTAA  528

seq1  GCAATAAAGCTTTGCCGCAGAAGATTCCGGTTTGTTGCGTCTTTCCTGGC  700
      |||||||||||||||||||||||||||||||||| || ||  ||||||||
seq2  GCAATAAAGCTTTGCCGCAGAAGATTCCGGTTTGCTGTGTTCTTCCTGGC  578

seq1  CGGT--CGTGAACGCG  714
      ||||  || |||||||
seq2  CGGTCGCGAGAACGCG  594

seq1: chr3_114461551_114462481
seq2: B6Ng01-159A02.g_181_1098

seq1  GGGAGTATTAAAAGTACTCAACGGACAGTGATGGGGGCTGAGCTTGGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTATTAAAAGTACTCAACGGACAGTGATGGGGGCTGAGCTTGGCTT  50

seq1  ACTTATAGAGTTAACTATACAACACTTACCGGTATCAAATCTTCCTGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATAGAGTTAACTATACAACACTTACCGGTATCAAATCTTCCTGACC  100

seq1  TTCACTTTGCTGACAGATGCACAGCTGAGAACTTCTGGGTTCCTCCTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTTGCTGACAGATGCACAGCTGAGAACTTCTGGGTTCCTCCTGCT  150

seq1  GATCCCTGCTGATGCTGACTCATGCCACAGTTGAGGCATGGCTATCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTGCTGATGCTGACTCATGCCACAGTTGAGGCATGGCTATCTCTG  200

seq1  CTAGGTAGTGGAACAGCTGCTGATTCGTGCTTGCTACACCAGCTCTACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTAGTGGAACAGCTGCTGATTCGTGCTTGCTACACCAGCTCTACAG  250

seq1  AGCTGGACTGCTGGTATATCTGTAAAATGTTTATGAGTGGATCAAGCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGACTGCTGGTATATCTGTAAAATGTTTATGAGTGGATCAAGCTGC  300

seq1  CATTGCTGGCCTGTGAAATAAACTACAGATTTCCAGACAACACAAATGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTGGCCTGTGAAATAAACTACAGATTTCCAGACAACACAAATGGG  350

seq1  AGTTGCTCTAAAGATCCTTTCTCAACAGGTCCACTCCCCACCCCCCACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTCTAAAGATCCTTTCTCAACAGGTCCACTCCCCACCCCCCACCC  400

seq1  CCGCTAATCCTTTCTTTTTGACTACCTCTGGTGGGTGGTGGGTTACAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTAATCCTTTCTTTTTGACTACCTCTGGTGGGTGGTGGGTTACAAGG  450

seq1  GATGTTAAAGTGTTTAAAAACAATCACTAGAAATAGACTTAAAAAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAAAGTGTTTAAAAACAATCACTAGAAATAGACTTAAAAAAAAAA  500

seq1  CTTCAAGTTACAGAGGACAGAAAGAGACATTGAGAGAGAAGGGGAGCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGTTACAGAGGACAGAAAGAGACATTGAGAGAGAAGGGGAGCTAT  550

seq1  TTAACTTATGACTTACTTACATTATCTGATTTATGACTTCTGGAATTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTATGACTTACTTACATTATCTGATTTATGACTTCTGGAATTTCA  600

seq1  AAGTAAGGCATTTGCATAGAGATACTTAGAACAAATCTTCAGTGAAAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGGCATTTGCATAGAGATACTTAGAACAAATCTTCAGTGAAAGAT  650

seq1  GAAGAGGGCAGTTATTTGTGATTGACATTGTCAATCTCAATGCTCTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGGCAGTTATTTGTGATTGACATTGTCAATCTCAATGCTCTTGAA  700

seq1  CCTCATAATCCTACTACTTAAAGCCATCCTTCCCTAGTCTCTTTAAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATAATCCTACTACTTAAAGCCATCCTTCCCTAGTCTCTTTAAAGAA  750

seq1  CTTTCTGTACTTATGTTTT-CCCATTATTCTTTGTTTTCACTGTTGTATA  799
      ||||||||||||||||||| ||||||||||||||||||| ||||||||| 
seq2  CTTTCTGTACTTATGTTTTCCCCATTATTCTTTGTTTTCCCTGTTGTAT-  799

seq1  ATTGGCACAGCTGACGAGAAGCTATTAAAGAAATTCACAGAGCCAATTAG  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATTGGCACAGCTGACGAGAAGCTATTAAAGAAA-TCACAGAGCCAATTAG  848

seq1  CTGTCATGTTTTAACATTACCATGACTCCCTAACTCCCCAGTAGGGTTAC  899
      |||||||| |||||||||| |||||||||   ||| ||||||| ||||||
seq2  CTGTCATG-TTTAACATTA-CATGACTCC--TACT-CCCAGTA-GGTTAC  892

seq1  TAGTTCAAACTATTGTTCCCTTTGCAATGCTT  931
      ||||   ||||| |||  ||||||| ||||||
seq2  TAGT--CAACTA-TGT--CCTTTGC-ATGCTT  918