BAC Information

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BAC

Clone NameB6Ng01-159A03
Chromosome3 (Build37)
Map Location 116,842,150 - 116,866,521
singlet/doubletdoublet
Overlap genenone
Upstream geneGpr88, Cdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik
Downstream geneLOC674908, D3Bwg0562e, 4833424O15Rik, EG668759, Snx7, LOC100043260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159A03.bB6Ng01-159A03.g
ACCDH952799DH952800
length1,1401,128
definitionDH952799|Mus musculus domesticus DNA, BAC clone: B6Ng01-159A03, 5' end.DH952800|Mus musculus domesticus DNA, BAC clone: B6Ng01-159A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,865,363 - 116,866,521)(116,842,150 - 116,843,298)
sequence
gaattccatccatcccccaggagtgtccaacaatataaacctttcctcta
ataagctacattttgtcagagtattttatcacaacaatggaaaaagaaac
taatgcacaactactcaatagacaaagccagacacatgagcagaccttag
ggctccctcaaagaccagcactccttccctattcatttctgtgactgttt
actgagcaagctagcctgtctatcacccagtagctgataaagcctcttac
atgtttgcagcctgacagagtcacgctgtcctctctggctacacttggta
cccagttctgcccacttgaagcatttttctcagctggtgctccaggcagg
aagagtggtcaggaacaagaccaccagggagaccatattgctgggaacaa
tagccttcattgttcaccctcttttcctcttcccacttaaaaaaaaaatc
tcccccagccaaatgtttctccctgctgcaggaaattttctaagcaaatt
tggcccaaatgttgccagctgtgatggacacataaaaatactttaactct
ttcctgcctcctatttaaagtttggtgcttattcaaaatgaagaaaagtt
gccatttaaacttaccgtaaaacagaaaaagataaatgtcattatcaaaa
tacaaaatgcttcaaggaaacagataccacagtctctcaaagcactggta
cccaaacaaaaatttctattaactctttaaggaggagtttgaggaaaatg
ttaccctagtgatctcttattgcttagccacattcctggagcaattatta
tattttaccttacatttttgagatatgatatgattccatgatttcttaat
ctctctcgtgatcccttggtcagagtcaagactgatgatagagaattctt
cagtccaatagaaactttgtgacatttatgccaggaaacatttaagtgcc
caccttagtatagagcttctgaaatacagagggtagagaaggaactacat
cgtcagtactgtcattccatcagactgaagaccattctactacatagtga
tcacctggttgtgatgtacacagatgctgctgagcattgtgaaatggtgt
ggggctgagatcttcatagcagctgaatggtatgccatag
gaattcagaaaggacaaagcatgtgaaaagtgactggcagtatatttgga
caaaggtacattcacacaattgagcaggcgttcattaactaaacaggaag
atgcaaaaatgctttgtttccaattataattttgtggtaaccaaaaaaag
gcctgttgctcccctatacccatgcccaaccttccaccaagggatcaatg
tgatacattttaagggtagaaatctacgcaaaataaattgaaaaggcatt
ttaaaggccaaggacacaacattttgcacacatacacatacccacagagg
cacacaaaaatagacacgcaacacaagctcatttcctctatttggcaatt
gtaaattaaaggttcacaggtaggctgggcatggtggcttataatcctag
tcttcacagtctgggataggaaaaatgcaggttagaggccagcttgggct
acaaagggagatcctgtattgtgtgtatatccaaagggagagcctatatt
atgtgtatatccaaaatacaacatatgggaggatgcttttgtaagtgaaa
gaggagtaagctagtcgttcccctggactatcccaggcattattagatgc
atggtgattctcactgggggagccagctcaacagtacaataggatatgac
aatggtctctgtctcactttgaggggactctggggcttctggctttggca
cacatgaagtctttggtttaggcagaagttattatctaggtagggtaaga
accaatacagtattgtggttaagaacactgactcatctcaaatgctggct
aagtaactgcgtgaccttggacagattacatcacctctctattctgaaac
ctccttttctgtaaattggaaacaattgttggttgttacgaaaattagat
gacttaatagtgggaaatgctgccagtagtgggtaataagtagggcttac
tgcattatatagtatttcttattcttataccatttttagagtatggaaaa
atttatgaggtacaaaaccaaaacaaaaaccctcaaaaaccaatcaacaa
accaaaaccaagccttctccccaacaaacacaggacgagacaaaactcac
cttatacctcgtacctgctagtttagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_116865363_116866521
seq2: B6Ng01-159A03.b_47_1186 (reverse)

seq1  CTATGGGCATACCATCAAGCTGCTATGAAGATACTTCAG-CCCACACATT  49
      |||| ||||||||||  |||||||||||||||   |||| |||||||  |
seq2  CTAT-GGCATACCATTCAGCTGCTATGAAGAT--CTCAGCCCCACACCAT  47

seq1  TCCACAAATGCTCAGCAAGCATCCTTGTGTACAAACCACAAACCAGGTGA  99
      | ||| |||||||||| ||||||  |||||||  | ||| ||||||||| 
seq2  TTCAC-AATGCTCAGC-AGCATC--TGTGTAC--ATCAC-AACCAGGTG-  89

seq1  ATCACTATGTAGTTAGAATGGTCTTCAAGTCTGGATTGGAATGACAGTAA  149
      |||||||||||| ||||||||||||| ||||||   |||||||||||| |
seq2  ATCACTATGTAG-TAGAATGGTCTTC-AGTCTG--ATGGAATGACAGT-A  134

seq1  CTGACGATGTAGGTTCCCTTCTCTACCCTCTGTATTTCAGAAGCTCTTAT  199
      ||||||||||||  | |||||||||||||||||||||||||||||||   
seq2  CTGACGATGTAG--TTCCTTCTCTACCCTCTGTATTTCAGAAGCTCT--A  180

seq1  TACTAAGGTGGGCACTTAAATGTTTCCTGGCATAAATGTCACAAAGTTTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGGTGGGCACTTAAATGTTTCCTGGCATAAATGTCACAAAGTTTC  230

seq1  TATTGGACTGAAGAATTCTCTATCATCAGTCTTGACTCTGACCAAGGGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGACTGAAGAATTCTCTATCATCAGTCTTGACTCTGACCAAGGGAT  280

seq1  CACGAGAGAGATTAAGAAATCATGGAATCATATCATATCTCAAAAATGTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGAGAGATTAAGAAATCATGGAATCATATCATATCTCAAAAATGTA  330

seq1  AGGTAAAATATAATAATTGCTCCAGGAATGTGGCTAAGCAATAAGAGATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAAATATAATAATTGCTCCAGGAATGTGGCTAAGCAATAAGAGATC  380

seq1  ACTAGGGTAACATTTTCCTCAAACTCCTCCTTAAAGAGTTAATAGAAATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGGTAACATTTTCCTCAAACTCCTCCTTAAAGAGTTAATAGAAATT  430

seq1  TTTGTTTGGGTACCAGTGCTTTGAGAGACTGTGGTATCTGTTTCCTTGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGGGTACCAGTGCTTTGAGAGACTGTGGTATCTGTTTCCTTGAA  480

seq1  GCATTTTGTATTTTGATAATGACATTTATCTTTTTCTGTTTTACGGTAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTGTATTTTGATAATGACATTTATCTTTTTCTGTTTTACGGTAAG  530

seq1  TTTAAATGGCAACTTTTCTTCATTTTGAATAAGCACCAAACTTTAAATAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGGCAACTTTTCTTCATTTTGAATAAGCACCAAACTTTAAATAG  580

seq1  GAGGCAGGAAAGAGTTAAAGTATTTTTATGTGTCCATCACAGCTGGCAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGAAAGAGTTAAAGTATTTTTATGTGTCCATCACAGCTGGCAAC  630

seq1  ATTTGGGCCAAATTTGCTTAGAAAATTTCCTGCAGCAGGGAGAAACATTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGCCAAATTTGCTTAGAAAATTTCCTGCAGCAGGGAGAAACATTT  680

seq1  GGCTGGGGGAGATTTTTTTTTTAAGTGGGAAGAGGAAAAGAGGGTGAACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGGGAGATTTTTTTTTTAAGTGGGAAGAGGAAAAGAGGGTGAACA  730

seq1  ATGAAGGCTATTGTTCCCAGCAATATGGTCTCCCTGGTGGTCTTGTTCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGCTATTGTTCCCAGCAATATGGTCTCCCTGGTGGTCTTGTTCCT  780

seq1  GACCACTCTTCCTGCCTGGAGCACCAGCTGAGAAAAATGCTTCAAGTGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTCTTCCTGCCTGGAGCACCAGCTGAGAAAAATGCTTCAAGTGGG  830

seq1  CAGAACTGGGTACCAAGTGTAGCCAGAGAGGACAGCGTGACTCTGTCAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTGGGTACCAAGTGTAGCCAGAGAGGACAGCGTGACTCTGTCAGG  880

seq1  CTGCAAACATGTAAGAGGCTTTATCAGCTACTGGGTGATAGACAGGCTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAACATGTAAGAGGCTTTATCAGCTACTGGGTGATAGACAGGCTAG  930

seq1  CTTGCTCAGTAAACAGTCACAGAAATGAATAGGGAAGGAGTGCTGGTCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCAGTAAACAGTCACAGAAATGAATAGGGAAGGAGTGCTGGTCTT  980

seq1  TGAGGGAGCCCTAAGGTCTGCTCATGTGTCTGGCTTTGTCTATTGAGTAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAGCCCTAAGGTCTGCTCATGTGTCTGGCTTTGTCTATTGAGTAG  1030

seq1  TTGTGCATTAGTTTCTTTTTCCATTGTTGTGATAAAATACTCTGACAAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCATTAGTTTCTTTTTCCATTGTTGTGATAAAATACTCTGACAAAA  1080

seq1  TGTAGCTTATTAGAGGAAAGGTTTATATTGTTGGACACTCCTGGGGGATG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTTATTAGAGGAAAGGTTTATATTGTTGGACACTCCTGGGGGATG  1130

seq1  GATGGAATTC  1159
      ||||||||||
seq2  GATGGAATTC  1140

seq1: chr3_116842150_116843298
seq2: B6Ng01-159A03.g_66_1193

seq1  GAATTCAGAAAGGACAAAGCATGTGAAAAGTGACTGGCAGTATATTTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAGGACAAAGCATGTGAAAAGTGACTGGCAGTATATTTGGA  50

seq1  CAAAGGTACATTCACACAATTGAGCAGGCGTTCATTAACTAAACAGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTACATTCACACAATTGAGCAGGCGTTCATTAACTAAACAGGAAG  100

seq1  ATGCAAAAATGCTTTGTTTCCAATTATAATTTTGTGGTAACCAAAAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAAATGCTTTGTTTCCAATTATAATTTTGTGGTAACCAAAAAAAG  150

seq1  GCCTGTTGCTCCCCTATACCCATGCCCAACCTTCCACCAAGGGATCAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTGCTCCCCTATACCCATGCCCAACCTTCCACCAAGGGATCAATG  200

seq1  TGATACATTTTAAGGGTAGAAATCTACGCAAAATAAATTGAAAAGGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACATTTTAAGGGTAGAAATCTACGCAAAATAAATTGAAAAGGCATT  250

seq1  TTAAAGGCCAAGGACACAACATTTTGCACACATACACATACCCACAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGCCAAGGACACAACATTTTGCACACATACACATACCCACAGAGG  300

seq1  CACACAAAAATAGACACGCAACACAAGCTCATTTCCTCTATTTGGCAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAAAATAGACACGCAACACAAGCTCATTTCCTCTATTTGGCAATT  350

seq1  GTAAATTAAAGGTTCACAGGTAGGCTGGGCATGGTGGCTTATAATCCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTAAAGGTTCACAGGTAGGCTGGGCATGGTGGCTTATAATCCTAG  400

seq1  TCTTCACAGTCTGGGATAGGAAAAATGCAGGTTAGAGGCCAGCTTGGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACAGTCTGGGATAGGAAAAATGCAGGTTAGAGGCCAGCTTGGGCT  450

seq1  ACAAAGGGAGATCCTGTATTGTGTGTATATCCAAAGGGAGAGCCTATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGGAGATCCTGTATTGTGTGTATATCCAAAGGGAGAGCCTATATT  500

seq1  ATGTGTATATCCAAAATACAACATATGGGAGGATGCTTTTGTAAGTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATATCCAAAATACAACATATGGGAGGATGCTTTTGTAAGTGAAA  550

seq1  GAGGAGTAAGCTAGTCGTTCCCCTGGACTATCCCAGGCATTATTAGATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTAAGCTAGTCGTTCCCCTGGACTATCCCAGGCATTATTAGATGC  600

seq1  ATGGTGATTCTCACTGGGGGAGCCAGCTCAACAGTACAATAGGATATGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGATTCTCACTGGGGGAGCCAGCTCAACAGTACAATAGGATATGAC  650

seq1  AATGGTCTCTGTCTCACTTTGAGGGGACTCTGGGGCTTCTGGCTTTGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTCTCTGTCTCACTTTGAGGGGACTCTGGGGCTTCTGGCTTTGGCA  700

seq1  CACATGAAGTCTTTGGTTTAGGCAGAAGTTATTATCTAGGTAGGGTAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAAGTCTTTGGTTTAGGCAGAAGTTATTATCTAGGTAGGGTAAGA  750

seq1  ACCAATACAGTATTGTGGTTAAGAACACTGACTCATCTCAAATGCTGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATACAGTATTGTGGTTAAGAACACTGACTCATCTCAAATGCTGGCT  800

seq1  AAGTAACTGCGTGACCTTGGACAGATTACATCACCTCTCTATTCTGAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAACTGCGTGACCTTGGACAGATTACATCACCTCTCTATTCTGAAAC  850

seq1  CTCCTTTTCTGTAAATTGGAAACAATTGTTGGTTGTTACGAAAATTAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTCTGTAAATTGGAAACAATTGTTGGTTGTTACGAAAATTAGAT  900

seq1  GACTTAATAGGTGGGAAATGCTGCCAGTAGTGGGTAATAAGTAGGGCTTA  950
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAATA-GTGGGAAATGCTGCCAGTAGTGGGTAATAAGTAGGGCTTA  949

seq1  CTGCATTATATAGTTATTTCTTATTCTTATACCATTTTATAGAGTAT-GA  999
      ||||||||||||| |||||||||||||||||||||||| |||||||| ||
seq2  CTGCATTATATAG-TATTTCTTATTCTTATACCATTTT-TAGAGTATGGA  997

seq1  AAAATTTATAGAGTACAAAAACAAAAACAAAAAAACCCCCAAAAACCAAA  1049
      |||||||||   |||||||| ||||   | |||||||| ||||||||  |
seq2  AAAATTTATGAGGTACAAAACCAAA---ACAAAAACCCTCAAAAACC--A  1042

seq1  ATCAAAACCAAACCAAAAACCAAGCCTTCCTCCCAACCAAACAACAGGAA  1099
      |||||   |||||| ||||||||||||| ||||| | ||||| ||||| |
seq2  ATCAA---CAAACC-AAAACCAAGCCTT-CTCCCCAACAAAC-ACAGG-A  1085

seq1  CGAGAACAAAAACTCACCTTATACTACCAATTTCACCTGCTAGTTAAGTT  1149
      |||||   ||||||||||||||||      |   ||||||||||| ||||
seq2  CGAGA--CAAAACTCACCTTATAC-----CTCGTACCTGCTAGTTTAGTT  1128