BAC Information

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BAC

Clone NameB6Ng01-159A22
Chromosome3 (Build37)3 (Build37)
Map Location 106,021,010 - 106,022,186106,024,147 - 106,025,033
singlet/doubletsingletsinglet
Overlap geneChi3l4
Upstream gene1700095B22Rik, Kcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1, Wdr77, Ovgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3
Downstream geneEG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2, Kcna10, Gm131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159A22.bB6Ng01-159A22.g
ACCDH952835DH952836
length1,183887
definitionDH952835|Mus musculus domesticus DNA, BAC clone: B6Ng01-159A22, 5' end.DH952836|Mus musculus domesticus DNA, BAC clone: B6Ng01-159A22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(106,021,010 - 106,022,186)(106,024,147 - 106,025,033)
sequence
gaattcttctgctttcagtggtaccacagccataacaggaatggcttacc
ttcattcaaggcttgttttgctcttcctttcctactcattccttaccctg
ctctccttgctatgccacctgcctgaatttcctattgtgtttatttcagt
gttactgttctagaacaactttttcagagacaggcaggagtagaatctga
gatagtgctaccgcaggtttatttgtctctctcctttcagaattagttta
catttatccctcattgccactttccattgattacctaaaatgacacatga
agaagcattaagttattcatagagctagattcaggtgtttaaaaccaagt
atttcaaagcttatgagttgcttcaaacctgtgctctacacaatttttca
ttttgtaaattcattcaaatgaagactgcctatgaatgttcaaaagacgc
ccagtagaggtgtaatcagtagattacatactgattcaaatccaaaatct
ttgcactgaagacgcagtcagaacgctcaccaataaaaatacagccatgc
atacatgataagacaacctgatttaaaaagcaaatcaacacaaagagaaa
ccctcttcaaagctaaactgttactttgttgctaaaaatggcatctcaga
caaaacattctatttgtgtggcactgtttcttgacagattgatgtaaaca
atggccaaattcaaaagatattgaatggtgtattttagatgttgtcttga
cttgagcaaggcttggctcattactactctggagactggggttactatat
gtatgctcactaattagaggaacgtttgaataatctcattctgtatcaca
tgcagaagtaacagatttcaaattttataacaattaggacacagaaagtg
gaacatgaggacattgccagattttactgatcactgtggaggagttgact
ggcattatgtcttcaaggtccatacctcatatacctgtaaagtttatagg
ggatgtaatgattaatagtctgtaggatggcaagtaggattttttttttc
tcatgattccatatattcaatgatcaataagtctagaacacaaaaggtca
aataggctatagcctactctctgggggtgtttactaggtatttactctct
ctcagaatataagaatgtttactaaccgaatga
gaattcacattccccattcatagatcatgaaatagtctataaactgtgca
gcctcctgtatttttttgcctattaccatatctctgagaataaacagtga
gcgagtttgctcctgtaggcctgttaactacacaatatgctgggtgtttg
gacacattgccaagcacacaagtacaaagcttcattcttcaatattgcct
tggtatattttttttcttattacctattttggggactcaacaatctttac
tcagatcatatttctgactttgctgcttttgaacacaattagtattctac
tccttgtgcacaaaaacactttaaagtttttgtttgtttttttctttttc
cttggtcatactttattttatatatattagtaaaattcagatgtttaatt
cacaacaatggaatgatttcacaattttttaaacagaaagaaggtcagaa
atattcaggacaaagaatgtactccctcagagcaaatctgaaaaaagaga
actcacttctcctttttattttcacttctcaccactgtatacagtgacta
gtcatgtgtgattccagtgcactgattacaaagaatcaaacaaaagcaca
atgctaacaatttcttcctcaaactactggcatatgtgggtgtctttaga
atataaatatggaccttggtacttcaatacttagaaagataagttcagat
aacaaccactaaaactagggtaaaacaggtgtatatcctcattcagtaat
gaagcattcctttgcctgaactctatccttccatgacactgagtatcacc
atccatttgtcacatttctaaatctttgaacttggccgacactgaacacc
tgtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_106021010_106022186
seq2: B6Ng01-159A22.b_47_1229 (reverse)

seq1  TCATTCTGTTAGT-AACATATCTATTATTCTGA-TGA-AGTAAATACCTA  47
      |||||| |||||| ||||| |||  ||||||||  || ||||||||||||
seq2  TCATTCGGTTAGTAAACAT-TCTTATATTCTGAGAGAGAGTAAATACCTA  49

seq1  GTAAAATACCACAGAGA-TGAGCTATAGCCTATTTGAC--TTATCGTTCT  94
      |||||   || |||||| |  |||||||||||||||||  ||   |||||
seq2  GTAAACACCCCCAGAGAGTAGGCTATAGCCTATTTGACCTTTTGTGTTCT  99

seq1  AGAC-TATTGATCATTGA--ATATGGAATCATGAG-AAAAAAAAATCCTA  140
      |||| |||||||||||||  ||||||||||||||| ||||||||||||||
seq2  AGACTTATTGATCATTGAATATATGGAATCATGAGAAAAAAAAAATCCTA  149

seq1  CTTTGCCATCCTACAGACTATTAATCATTACATCCCCTATAAACTTTACA  190
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-TTGCCATCCTACAGACTATTAATCATTACATCCCCTATAAACTTTACA  198

seq1  GGTATATGAGGTATGGACCTTGAAGACATAATGCCAGTCAAACTCCTCCA  240
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGTATATGAGGTATGGACCTTGAAGACATAATGCCAGTC-AACTCCTCCA  247

seq1  CAGTGATCAGTAAAATCTGGCAATGTCCTCATGTTCCACCTTCTGTGTCC  290
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAGTGATCAGTAAAATCTGGCAATGTCCTCATGTTCCACTTTCTGTGTCC  297

seq1  TAATTGTTATAAAATTTGAAATCTGTTACTTCTGCATGTGATACAGAATG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTTATAAAATTTGAAATCTGTTACTTCTGCATGTGATACAGAATG  347

seq1  AGATTATTCAAACGTTCCTCTAATTAGTGAGCATACATATAGTAACCCCA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATTCAAACGTTCCTCTAATTAGTGAGCATACATATAGTAACCCCA  397

seq1  GTCTCCAGAGTAGTAATGAGCCAAGCCTTGCTCAAGTCAAGACAACATCT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAGAGTAGTAATGAGCCAAGCCTTGCTCAAGTCAAGACAACATCT  447

seq1  AAAATACACCATTCAATATCTTTTGAATTTGGCCATTGTTTACATCAATC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACACCATTCAATATCTTTTGAATTTGGCCATTGTTTACATCAATC  497

seq1  TGTCAAGAAACAGTGCCACACAAATAGAATGTTTTGTCTGAGATGCCATT  540
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGTCAAGAAACAGTGCCACACAAATAGAATGTTTTGTCTGAGATGCCA-T  546

seq1  TTTTAGCAACAAAGTAACAGTTTAGCTTTGAAGAGGGTTTCTCTTTGTGT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGCAACAAAGTAACAGTTTAGCTTTGAAGAGGGTTTCTCTTTGTGT  596

seq1  TGATTTGCTTTTTAAATCAGGTTGTCTTATCATGTATGCATGGCTGTATT  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGCTTTTTAAATCAGGTTGTCTTATCATGTATGCATGGCTGTATT  646

seq1  TTTATTGGTGAGCGTTCTGACTGCGTCTTCAGTGCAAAGATTTTGGATTT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGGTGAGCGTTCTGACTGCGTCTTCAGTGCAAAGATTTTGGATTT  696

seq1  GAATCAGTATGTAATCTACTGATTACACCTCTACTGGGCGTCTTTTGAAC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGTATGTAATCTACTGATTACACCTCTACTGGGCGTCTTTTGAAC  746

seq1  ATTCATAGGCAGTCTTCATTTGAATGAATTTACAAAATGAAAAATTGTGT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATAGGCAGTCTTCATTTGAATGAATTTACAAAATGAAAAATTGTGT  796

seq1  AGAGCACAGGTTTGAAGCAACTCATAAGCTTTGAAATACTTGGTTTTAAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACAGGTTTGAAGCAACTCATAAGCTTTGAAATACTTGGTTTTAAA  846

seq1  CACCTGAATCTAGCTCTATGAATAACTTAATGCTTCTTCATGTGTCATTT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGAATCTAGCTCTATGAATAACTTAATGCTTCTTCATGTGTCATTT  896

seq1  TAGGTAATCAATGGAAAGTGGCAATGAGGGATAAATGTAAACTAATTCTG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAATCAATGGAAAGTGGCAATGAGGGATAAATGTAAACTAATTCTG  946

seq1  AAAGGAGAGAGACAAATAAACCTGCGGTAGCACTATCTCAGATTCTACTC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGAGAGACAAATAAACCTGCGGTAGCACTATCTCAGATTCTACTC  996

seq1  CTGCCTGTCTCTGAAAAAGTTGTTCTAGAACAGTAACACTGAAATAAACA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGTCTCTGAAAAAGTTGTTCTAGAACAGTAACACTGAAATAAACA  1046

seq1  CAATAGGAAATTCAGGCAGGTGGCATAGCAAGGAGAGCAGGGTAAGGAAT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGGAAATTCAGGCAGGTGGCATAGCAAGGAGAGCAGGGTAAGGAAT  1096

seq1  GAGTAGGAAAGGAAGAGCAAAACAAGCCTTGAATGAAGGTAAGCCATTCC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGGAAAGGAAGAGCAAAACAAGCCTTGAATGAAGGTAAGCCATTCC  1146

seq1  TGTTATGGCTGTGGTACCACTGAAAGCAGAAGAATTC  1177
      |||||||||||||||||||||||||||||||||||||
seq2  TGTTATGGCTGTGGTACCACTGAAAGCAGAAGAATTC  1183

seq1: chr3_106024147_106025033
seq2: B6Ng01-159A22.g_65_951

seq1  GAATTCACATTCCCCATTCATAGATCATGAAATAGTCTATAAACTGTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTCCCCATTCATAGATCATGAAATAGTCTATAAACTGTGCA  50

seq1  GCCTCCTGTATTTTTTTGCCTATTACCATATCTCTGAGAATAAACAGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTGTATTTTTTTGCCTATTACCATATCTCTGAGAATAAACAGTGA  100

seq1  GCGAGTTTGCTCCTGTAGGCCTGTTAACTACACAATATGCTGGGTGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGTTTGCTCCTGTAGGCCTGTTAACTACACAATATGCTGGGTGTTTG  150

seq1  GACACATTGCCAAGCACACAAGTACAAAGCTTCATTCTTCAATATTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATTGCCAAGCACACAAGTACAAAGCTTCATTCTTCAATATTGCCT  200

seq1  TGGTATATTTTTTTTCTTATTACCTATTTTGGGGACTCAACAATCTTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATATTTTTTTTCTTATTACCTATTTTGGGGACTCAACAATCTTTAC  250

seq1  TCAGATCATATTTCTGACTTTGCTGCTTTTGAACACAATTAGTATTCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCATATTTCTGACTTTGCTGCTTTTGAACACAATTAGTATTCTAC  300

seq1  TCCTTGTGCACAAAAACACTTTAAAGTTTTTGTTTGTTTTTTTCTTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTGCACAAAAACACTTTAAAGTTTTTGTTTGTTTTTTTCTTTTTC  350

seq1  CTTGGTCATACTTTATTTTATATATATTAGTAAAATTCAGATGTTTAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCATACTTTATTTTATATATATTAGTAAAATTCAGATGTTTAATT  400

seq1  CACAACAATGGAATGATTTCACAATTTTTTAAACAGAAAGAAGGTCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACAATGGAATGATTTCACAATTTTTTAAACAGAAAGAAGGTCAGAA  450

seq1  ATATTCAGGACAAAGAATGTACTCCCTCAGAGCAAATCTGAAAAAAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAGGACAAAGAATGTACTCCCTCAGAGCAAATCTGAAAAAAGAGA  500

seq1  ACTCACTTCTCCTTTTTATTTTCACTTCTCACCACTGTATACAGTGACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTTCTCCTTTTTATTTTCACTTCTCACCACTGTATACAGTGACTA  550

seq1  GTCATGTGTGATTCCAGTGCACTGATTACAAAGAATCAAACAAAAGCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTGTGATTCCAGTGCACTGATTACAAAGAATCAAACAAAAGCACA  600

seq1  ATGCTAACAATTTCTTCCTCAAACTACTGGCATATGTGGGTGTCTTTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAACAATTTCTTCCTCAAACTACTGGCATATGTGGGTGTCTTTAGA  650

seq1  ATATAAATATGGACCTTGGTACTTCAATACTTAGAAAGATAAGTTCAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATATGGACCTTGGTACTTCAATACTTAGAAAGATAAGTTCAGAT  700

seq1  AACAACCACTAAAACTAGGGTAAAACAGGTGTATATCCTCATTCAGTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCACTAAAACTAGGGTAAAACAGGTGTATATCCTCATTCAGTAAT  750

seq1  GAAGCATTCCTTTGCCTGAACTCTATCCTTCCATGACACTGAGTATCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCATTCCTTTGCCTGAACTCTATCCTTCCATGACACTGAGTATCACC  800

seq1  ATCCATTTGTCACATTTCTAAATCTTTGAACTTGGCCGACACTGAACACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTTGTCACATTTCTAAATCTTTGAACTTGGCCGACACTGAACACC  850

seq1  TGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  887
      |||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  887