BAC Information

Click to search

BAC

Clone NameB6Ng01-159C24
Chromosome3 (Build37)
Map Location 33,061,359 - 33,206,816
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnmb2, LOC665514, Zmat3, 4930429B21Rik, Pik3ca, Kcnmb3, Zfp639, Mfn1, Gnb4, LOC100040977, Actl6a, Mrpl47, Ndufb5, Usp13, Pex2
Downstream geneEG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727, EG665636
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159C24.bB6Ng01-159C24.g
ACCDH952929DH952930
length1,1661,040
definitionDH952929|Mus musculus domesticus DNA, BAC clone: B6Ng01-159C24, 5' end.DH952930|Mus musculus domesticus DNA, BAC clone: B6Ng01-159C24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,205,634 - 33,206,816)(33,061,359 - 33,062,403)
sequence
gaattcatctattttaatattgattggatagaacaaaaatgtaaaactta
ttatattagggaggttgtttgagcaggtttctagacagacaggtttcctt
gagtgactcctttatccaaaagtgggcattaccagtgtttctttagatga
tggcattgcagaaagcattctgcaggcagcgttgtatagcaatgagacaa
tggcactcatacatttgtagacttatactttttaaaacctactttaataa
gggttcttaaatgctttaacttcccttttagcccaccacgcgccagaagt
agtggaaaggaaaggattatagggcaaagtgggatgtggacttgtttaga
aatggttttggggaaagattccaatcttcattgtcaggatatcaacagct
cagctcacatgaatcagcaacagtagctagatccactcacaaacaccact
catgaaccagtaatgggagttcgattcagaagaaactgtgaggctctacc
aatcaacccaagtccatggaagtggcaagaagctgccagaacgtgatgag
aagttctttggtgagtttctctctatgaagtcagtacaaacaatgatcaa
caaagaagaaggcaaggtgaaccaatgccacagtgtcatcagccaagacc
accagcagcaaagcctgaaaagaccagaaaaagagtgacaaggtaacgcc
cacagcatgttgggttattaccaaacatcatgtgcccactctagcaaaat
gtcacatgtcctttttccaagcagcatccagaaaaacatgtctgttctca
gcaaccatcctccaatgtgtctctttagcaaaacatcctctcataaaata
tcacgtggcacaactgagtctccaaagaaaccaaaaatttccacttcaca
cattacgctataggatgtgactttgtctcacaaacccatcacgctctggg
ttccaggatccagaaacagaggattccaaatcagcatgaaaagaaaattc
aaagctttattttcagagttttcaaccacttaccactattgatgttgggg
aggggaactaaaaaagtaatgtggttatttttcatgtctgggatactggg
tccacctgatatcctgttggataattgttcattttcttacagaatagtct
acaaatgattaggtat
gaattcttgctgagtgcttataatgtgctagagagaacaaaggggcttcc
aaggattgtctggccagatggaagcaactgcctaatgagacagctcctat
tctgactcttcttttgcatatggagactgaggcatagctagactagcaaa
cttacccaacatcactcagaaagcacgagatggagctagattagatggca
ggtttgccatcaatctatgctcattccaagcaggcacagagcagtgtgca
tttcagcaggtctgaatgtttacaattggcacaaggacttcttgaaaact
tactggatctctgtcatgtgacactactcctgagtgtatgtgggcaaact
tctactcaaacagatagggcaccaatggcagaccaacatcaaaaaaaaaa
attccacaagagcccaacttggtgagccaatgagttaattgggtttactt
acagggttgtgggtgaacggttaccagacagtgcagaaatgattcaagga
cagttacattaccaaagcccaccgcagaaggagtgacagctcacaaaagc
tggagtacactgtatagatcccagacatctcaacagagtggagattattc
tttccaaagactttgactagtctgtctcttccagcttggttgatctctgc
tgcttcctagaagtttagatgttctaagaatgactgtcatcaggccttac
tgcttatattctctgtgaaggggaggggcctagtgaaatctggtcagttt
cagggaatttctaaagcctctgagttttttaattcctgagtccccttaga
accaccctgtatcttaatttgcttcactttgaaaaggatgggtttgtatc
agaggcagtgctataaacaacagatcctactttattcaagagctatgtgg
ctactcagctctcaaataattgaaataatcgtgaatctgtttttctgaat
atgaaactgagtctgtgaatctaaataatctctcgtaagagaaatcacaa
aaactatgtcagtctggacactgcattgaaactggtctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_33205634_33206816
seq2: B6Ng01-159C24.b_44_1209 (reverse)

seq1  ATACCTAACTTCATTTTGTAAGACTATTTTGTTAAGAAAAATGAACAATA  50
      ||||||||  ||| ||||| |||||||| || |||| |||||||||||| 
seq2  ATACCTAA--TCA-TTTGT-AGACTATTCTG-TAAG-AAAATGAACAAT-  43

seq1  TATCCAACAGTGATAATCAGGTGGAACCAAGTAATCCCAGACATGAAAAA  100
      |||||||||| ||| ||||||||| ||| ||| |||||||||||||||||
seq2  TATCCAACAG-GAT-ATCAGGTGG-ACCCAGT-ATCCCAGACATGAAAAA  89

seq1  ATTATACCACATTACTGTTTTTTAGTTCCCCTCCCCAACATCAAATAGTG  150
        || ||||||||||  ||||||||||||||||||||||||| |||||||
seq2  --TA-ACCACATTAC--TTTTTTAGTTCCCCTCCCCAACATC-AATAGTG  133

seq1  GTAAGTGTTTGAAAACTCTGAAAATAAAGCTTTGAATTTTCTTTTCATGC  200
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTGGTTGAAAACTCTGAAAATAAAGCTTTGAATTTTCTTTTCATGC  183

seq1  TGATTTGGAATCCTCTGTTTCTGGATCCTGGAACCCAGAGCGTGATGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGGAATCCTCTGTTTCTGGATCCTGGAACCCAGAGCGTGATGGGT  233

seq1  TTGTGAGACAAAGTCACATCCTATAGCGTAATGTGTGAAGTGGAAATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGACAAAGTCACATCCTATAGCGTAATGTGTGAAGTGGAAATTTT  283

seq1  TGGTTTCTTTGGAGACTCAGTTGTGCCACGTGATATTTTATGAGAGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTTTGGAGACTCAGTTGTGCCACGTGATATTTTATGAGAGGATG  333

seq1  TTTTGCTAAAGAGACACATTGGAGGATGGTTGCTGAGAACAGACATGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTAAAGAGACACATTGGAGGATGGTTGCTGAGAACAGACATGTTT  383

seq1  TTCTGGATGCTGCTTGGAAAAAGGACATGTGACATTTTGCTAGAGTGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGATGCTGCTTGGAAAAAGGACATGTGACATTTTGCTAGAGTGGGC  433

seq1  ACATGATGTTTGGTAATAACCCAACATGCTGTGGGCGTTACCTTGTCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATGTTTGGTAATAACCCAACATGCTGTGGGCGTTACCTTGTCACT  483

seq1  CTTTTTCTGGTCTTTTCAGGCTTTGCTGCTGGTGGTCTTGGCTGATGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTGGTCTTTTCAGGCTTTGCTGCTGGTGGTCTTGGCTGATGACA  533

seq1  CTGTGGCATTGGTTCACCTTGCCTTCTTCTTTGTTGATCATTGTTTGTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCATTGGTTCACCTTGCCTTCTTCTTTGTTGATCATTGTTTGTAC  583

seq1  TGACTTCATAGAGAGAAACTCACCAAAGAACTTCTCATCACGTTCTGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCATAGAGAGAAACTCACCAAAGAACTTCTCATCACGTTCTGGCA  633

seq1  GCTTCTTGCCACTTCCATGGACTTGGGTTGATTGGTAGAGCCTCACAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTGCCACTTCCATGGACTTGGGTTGATTGGTAGAGCCTCACAGTT  683

seq1  TCTTCTGAATCGAACTCCCATTACTGGTTCATGAGTGGTGTTTGTGAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGAATCGAACTCCCATTACTGGTTCATGAGTGGTGTTTGTGAGTG  733

seq1  GATCTAGCTACTGTTGCTGATTCATGTGAGCTGAGCTGTTGATATCCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGCTACTGTTGCTGATTCATGTGAGCTGAGCTGTTGATATCCTGA  783

seq1  CAATGAAGATTGGAATCTTTCCCCAAAACCATTTCTAAACAAGTCCACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAGATTGGAATCTTTCCCCAAAACCATTTCTAAACAAGTCCACAT  833

seq1  CCCACTTTGCCCTATAATCCTTTCCTTTCCACTACTTCTGGCGCGTGGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTTGCCCTATAATCCTTTCCTTTCCACTACTTCTGGCGCGTGGTG  883

seq1  GGCTAAAAGGGAAGTTAAAGCATTTAAGAACCCTTATTAAAGTAGGTTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAAAGGGAAGTTAAAGCATTTAAGAACCCTTATTAAAGTAGGTTTT  933

seq1  AAAAAGTATAAGTCTACAAATGTATGAGTGCCATTGTCTCATTGCTATAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTATAAGTCTACAAATGTATGAGTGCCATTGTCTCATTGCTATAC  983

seq1  AACGCTGCCTGCAGAATGCTTTCTGCAATGCCATCATCTAAAGAAACACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTGCCTGCAGAATGCTTTCTGCAATGCCATCATCTAAAGAAACACT  1033

seq1  GGTAATGCCCACTTTTGGATAAAGGAGTCACTCAAGGAAACCTGTCTGTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATGCCCACTTTTGGATAAAGGAGTCACTCAAGGAAACCTGTCTGTC  1083

seq1  TAGAAACCTGCTCAAACAACCTCCCTAATATAATAAGTTTTACATTTTTG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACCTGCTCAAACAACCTCCCTAATATAATAAGTTTTACATTTTTG  1133

seq1  TTCTATCCAATCAATATTAAAATAGATGAATTC  1183
      |||||||||||||||||||||||||||||||||
seq2  TTCTATCCAATCAATATTAAAATAGATGAATTC  1166

seq1: chr3_33061359_33062403
seq2: B6Ng01-159C24.g_65_1104

seq1  GAATTCTTGCTGAGTGCTTATAATGTGCTAGAGAGAACAAAGGGGCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTGAGTGCTTATAATGTGCTAGAGAGAACAAAGGGGCTTCC  50

seq1  AAGGATTGTCTGGCCAGATGGAAGCAACTGCCTAATGAGACAGCTCCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTGTCTGGCCAGATGGAAGCAACTGCCTAATGAGACAGCTCCTAT  100

seq1  TCTGACTCTTCTTTTGCATATGGAGACTGAGGCATAGCTAGACTAGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTCTTCTTTTGCATATGGAGACTGAGGCATAGCTAGACTAGCAAA  150

seq1  CTTACCCAACATCACTCAGAAAGCACGAGATGGAGCTAGATTAGATGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCCAACATCACTCAGAAAGCACGAGATGGAGCTAGATTAGATGGCA  200

seq1  GGTTTGCCATCAATCTATGCTCATTCCAAGCAGGCACAGAGCAGTGTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGCCATCAATCTATGCTCATTCCAAGCAGGCACAGAGCAGTGTGCA  250

seq1  TTTCAGCAGGTCTGAATGTTTACAATTGGCACAAGGACTTCTTGAAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGCAGGTCTGAATGTTTACAATTGGCACAAGGACTTCTTGAAAACT  300

seq1  TACTGGATCTCTGTCATGTGACACTACTCCTGAGTGTATGTGGGCAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGATCTCTGTCATGTGACACTACTCCTGAGTGTATGTGGGCAAACT  350

seq1  TCTACTCAAACAGATAGGGCACCAATGGCAGACCAACATCAAAAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCAAACAGATAGGGCACCAATGGCAGACCAACATCAAAAAAAAAA  400

seq1  ATTCCACAAGAGCCCAACTTGGTGAGCCAATGAGTTAATTGGGTTTACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACAAGAGCCCAACTTGGTGAGCCAATGAGTTAATTGGGTTTACTT  450

seq1  ACAGGGTTGTGGGTGAACGGTTACCAGACAGTGCAGAAATGATTCAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTTGTGGGTGAACGGTTACCAGACAGTGCAGAAATGATTCAAGGA  500

seq1  CAGTTACATTACCAAAGCCCACCGCAGAAGGAGTGACAGCTCACAAAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACATTACCAAAGCCCACCGCAGAAGGAGTGACAGCTCACAAAAGC  550

seq1  TGGAGTACACTGTATAGATCCCAGACATCTCAACAGAGTGGAGATTATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTACACTGTATAGATCCCAGACATCTCAACAGAGTGGAGATTATTC  600

seq1  TTTCCAAAGACTTTGACTAGTCTGTCTCTTCCAGCTTGGTTGATCTCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAAGACTTTGACTAGTCTGTCTCTTCCAGCTTGGTTGATCTCTGC  650

seq1  TGCTTCCTAGAAGTTTAGATGTTCTAAGAATGACTGTCATCAGGCCTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTAGAAGTTTAGATGTTCTAAGAATGACTGTCATCAGGCCTTAC  700

seq1  TGCTTATATTCTCTGTGAAGGGGAGGGGCCTAGTG-AATCTGGTCAGTTT  749
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGCTTATATTCTCTGTGAAGGGGAGGGGCCTAGTGAAATCTGGTCAGTTT  750

seq1  CAGGGAATTTCTAAAGCCTCTGAGTTTTTTAATTCCTGAGTCCCCTTAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAATTTCTAAAGCCTCTGAGTTTTTTAATTCCTGAGTCCCCTTAGA  800

seq1  A-CACCCTGTATCTTAATTTGCTTCACTTTGAAAAGGATGGGTTTGTATC  848
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCTGTATCTTAATTTGCTTCACTTTGAAAAGGATGGGTTTGTATC  850

seq1  AGAGGCAGTTGCTATAAACAACAGATCCTACTTTATTTCAAGAGCTATGT  898
      |||||||| |||||||||||||||||||||||||| ||||||||||||| 
seq2  AGAGGCAG-TGCTATAAACAACAGATCCTACTTTA-TTCAAGAGCTATG-  897

seq1  TGGCTACTCAGCTCTCAAATATTTGAAATAATCGTGAATCTGTTTTTCTG  948
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGGCTACTCAGCTCTCAAATAATTGAAATAATCGTGAATCTGTTTTTCTG  947

seq1  -ATATGAAAACTGAGTCTTGTGAATCTAAATAATCTCTCCGTAGAGAAAT  997
       ||||| |||||||||| |||||||||||||||||||||   ||||||||
seq2  AATATG-AAACTGAGTC-TGTGAATCTAAATAATCTCTCGTAAGAGAAAT  995

seq1  CACAAAACTAATGGTCAGTCCTGGACACTGCATTGAAACTGTGTCTAA  1045
      |||||||   || |||||| ||||||||||||||||||||| ||||||
seq2  CACAAAAACTAT-GTCAGT-CTGGACACTGCATTGAAACTG-GTCTAA  1040