BAC Information

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BAC

Clone NameB6Ng01-159J20
Chromosome3 (Build37)
Map Location 42,829,258 - 42,830,462
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039204, LOC100039219
Downstream geneLOC677788, LOC100039264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159J20.bB6Ng01-159J20.g
ACCDH953227DH953228
length1,1971,151
definitionDH953227|Mus musculus domesticus DNA, BAC clone: B6Ng01-159J20, 5' end.DH953228|Mus musculus domesticus DNA, BAC clone: B6Ng01-159J20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatcagttaaaaggacaatttatccttctttgataccctataagt
ttttccaaatgtcacatactaatttgatgtataattcattaaatggaatg
ttcattctttgaatgtaaattcagatacttcttattcttttaattacttg
ttcaaggtgttcccatgttagaaacttaaaaggaattatgaaagaaagac
tttgaagtatggagaagttcaattatagactgtataaatttataagcaat
taaatttaagtggtgtatccctaacatatcatgggtgtaatttcttaaag
ggttataaaaaattagtgataaatgtgttaagttttagcatttcattaag
atgagaaatgtattcccatttgaagtacacttatattttctccaaattct
tgctctataataatcagaagaccttaaaaatatataacaacactcaaaaa
cacattcataatttaaattaacataatcagaacttgaattggcaaatatt
caattttgcttttaagaaatttaaattattaactttaacagaataataaa
acttttttatttagagaaaaagtcacatgaaattagttttgagttatctg
gatagtaatatatgttataagaccttgttatataagtgatatagtttata
tagttctatgagaatgcgtaaactttctgggggaaaaatagcttcttttc
ttttgagattaccataactgaacatacaaaccaagtttagttagccttct
cagtctcaattttgctgtttagaaaatgaaggatttggtccagtaattca
gaaactcttcattctcttgaaaataagtaaattctattacaagctcaatt
acctcattacctttgatggtccaaagaaagtgtgactagcaaatatatta
aagttttgcagctgattttagatcagtctttgattcactgctcagccagt
gtctgaggacatcaatgcagaggattgtgaccaggcagaagaaatatgaa
atctaaagccatgcctttaaaaatattttcagattcatgattgtgtcata
gtccaacaagaaatatatggattttcctctataagaactcgactaatgtc
ttctcttttattcagtgcttctatggtcctttatcatagggacctaaaca
caagaatgtgtcaaccgagaaattcctgttggccctgatgctgaaat
gaattcacaacctaccccaacttatgagacataatgaaaacagcaataaa
aagaaagttcatagctctaagtgccttcttttttttctttttttattaga
tattttcttcatttacatttcaaatggtaagtggcttcttaaggaaatta
gttagatcccatattaacaacttaagaccatatttgaaaagtctagaaca
aaaggaagcaaacatatgcaagaagagaagcgaataggaaataatcaaat
gtgggacttaattcaacaaattaaaaaaaaagtgaatacaaagaattaat
taaaaaaaacagctgtttctttgaaaaactcaacatgatagatcaccctt
accaaaataactaaaaggaagagaaagaatatccaaattaacaaaatcag
aaaagaaaaggagacatcacaacagacaccaaggaaatccactcattagg
aaacattaggtcttatttcaaaaagtctgtgctgtacaaacttgtaaact
ctaaatcaaatggacaattttcttgatagtcaccactacaaatgttaaat
cacagtcgtgtaaatgatttaaatagacctatcaacctgaaggaaataca
agcagtcattataattctcccaaacaaaacagcaaggttataatgcaaaa
ttctaccagatagtcaaagcagagataataccaaaattacccaaattatt
tccacaaaatagcaagagtaggaacactaccaaattaattgcatgaggcc
atagtctccttgatacctaaaccatacaaagaatcaatcatgaaaaagaa
tttcagaccaatttcacttaggaaactgatgatatttaataaaatgcttg
caaatctagattcaagaacacatcaaaaccatcatatatcctggttactt
ggacaggcttcacccagagatgagggatggttcacatataacaactgaaa
acaaaaacacacacaacatcacaacacaacaaatgatcatctatgatgat
gaagctattgacaaacttactcataataagtctggagaaatcagggatca
tgccaactaccattaggcattagtagcatagctaacttcattatggagat
caaatatggctttaatcgaccggtagagggtatacagttcttcttcacat
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_42829258_42830462
seq2: B6Ng01-159J20.b_46_1242

seq1  GAATTCATCAGTTAAAAGGACAATTTATCCTTCTTTGATACCCTATAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGTTAAAAGGACAATTTATCCTTCTTTGATACCCTATAAGT  50

seq1  TTTTCCAAATGTCACATACTAATTTGATGTATAATTCATTAAATGGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAAATGTCACATACTAATTTGATGTATAATTCATTAAATGGAATG  100

seq1  TTCATTCTTTGAATGTAAATTCAGATACTTCTTATTCTTTTAATTACTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCTTTGAATGTAAATTCAGATACTTCTTATTCTTTTAATTACTTG  150

seq1  TTCAAGGTGTTCCCATGTTAGAAACTTAAAAGGAATTATGAAAGAAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGTGTTCCCATGTTAGAAACTTAAAAGGAATTATGAAAGAAAGAC  200

seq1  TTTGAAGTATGGAGAAGTTCAATTATAGACTGTATAAATTTATAAGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGTATGGAGAAGTTCAATTATAGACTGTATAAATTTATAAGCAAT  250

seq1  TAAATTTAAGTGGTGTATCCCTAACATATCATGGGTGTAATTTCTTAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTAAGTGGTGTATCCCTAACATATCATGGGTGTAATTTCTTAAAG  300

seq1  GGTTATAAAAAATTAGTGATAAATGTGTTAAGTTTTAGCATTTCATTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATAAAAAATTAGTGATAAATGTGTTAAGTTTTAGCATTTCATTAAG  350

seq1  ATGAGAAATGTATTCCCATTTGAAGTACACTTATATTTTCTCCAAATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAATGTATTCCCATTTGAAGTACACTTATATTTTCTCCAAATTCT  400

seq1  TGCTCTATAATAATCAGAAGACCTTAAAAATATATAACAACACTCAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTATAATAATCAGAAGACCTTAAAAATATATAACAACACTCAAAAA  450

seq1  CACATTCATAATTTAAATTAACATAATCAGAACTTGAATTGGCAAATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCATAATTTAAATTAACATAATCAGAACTTGAATTGGCAAATATT  500

seq1  CAATTTTGCTTTTAAGAAATTTAAATTATTAACTTTAACAGAATAATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGCTTTTAAGAAATTTAAATTATTAACTTTAACAGAATAATAAA  550

seq1  ACTTTTTTATTTAGAGAAAAAGTCACATGAAATTAGTTTTGAGTTATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTATTTAGAGAAAAAGTCACATGAAATTAGTTTTGAGTTATCTG  600

seq1  GATAGTAATATATGTTATAAGACCTTGTTATATAAGTGATATAGTTTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTAATATATGTTATAAGACCTTGTTATATAAGTGATATAGTTTATA  650

seq1  TAGTTCTATGAGAATGCGTAAACTTTCTGGGGGAAAAATAGCTTCTTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTATGAGAATGCGTAAACTTTCTGGGGGAAAAATAGCTTCTTTTC  700

seq1  TTTTGAGATTACCATAACTGAACATACAAACCAAGTTTAGTTAGCCTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGATTACCATAACTGAACATACAAACCAAGTTTAGTTAGCCTTCT  750

seq1  CAGTCTCAATTTTGCTGTTTAGAAAATGAAGGATTTGGTCCAGTAATTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCAATTTTGCTGTTTAGAAAATGAAGGATTTGGTCCAGTAATTCA  800

seq1  GAAACTCTTCATTCTCTTGAAAATAAGTAAATTCTATTACAAGCTCAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCTTCATTCTCTTGAAAATAAGTAAATTCTATTACAAGCTCAATT  850

seq1  ACCTCATTACCTTTGATGGTCCAAAGAAAGTGTGACTAGCAAATATATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATTACCTTTGATGGTCCAAAGAAAGTGTGACTAGCAAATATATTA  900

seq1  AAGTTTTGCAGCTGATTTTAGATCAGGTCTTTGATTCACTGCTCAGCCAA  950
      ||||||||||||||||||||||||| |||||||||||||||||||||| |
seq2  AAGTTTTGCAGCTGATTTTAGATCA-GTCTTTGATTCACTGCTCAGCC-A  948

seq1  GTGTCTGAGGAACATCAAATGCAGAGGATTGTGACCAGGCAGAAGAAATA  1000
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  GTGTCTGAGG-ACATC-AATGCAGAGGATTGTGACCAGGCAGAAGAAATA  996

seq1  TGAAATCTTAAAGCCATGCCTTTAAATATATTTTCAGATTCATGA-TGTG  1049
      ||||||| |||||||||||||||||| |||||||||||||||||| ||||
seq2  TGAAATC-TAAAGCCATGCCTTTAAAAATATTTTCAGATTCATGATTGTG  1045

seq1  TCATAAGTCCAAACAAAGAATATAGTGATTTTCCTCTATAAAGACTCAGA  1099
      |||| ||||| |||||  ||||||  |||||||||||||||  |||| ||
seq2  TCAT-AGTCC-AACAAGAAATATATGGATTTTCCTCTATAAGAACTC-GA  1092

seq1  CTAATGTCTTCTCTTTTA-TCAGTGCTTTCTATGGGTACTTTATCATGGC  1148
      |||||||||||||||||| ||||||| |||||| ||| ||||||||| | 
seq2  CTAATGTCTTCTCTTTTATTCAGTGC-TTCTAT-GGTCCTTTATCATAGG  1140

seq1  AGCTTAAACACAAGAATATGTGTC-ATCGAG-TATTCCTGTTGGCCCTGA  1196
        | |||||||||||  ||||||| | ||||  |||||||||||||||||
seq2  GACCTAAACACAAGA--ATGTGTCAACCGAGAAATTCCTGTTGGCCCTGA  1188

seq1  GGCTGAAAT  1205
       ||||||||
seq2  TGCTGAAAT  1197