BAC Information

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BAC

Clone NameB6Ng01-159K07
Chromosome3 (Build37)
Map Location 56,900,086 - 56,965,946
singlet/doubletdoublet
Overlap geneLOC666585
Upstream geneLOC100040139
Downstream geneTm4sf1, LOC383862, Tm4sf4, Wwtr1, Commd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2, EG433594, LOC100040216
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-159K07.bB6Ng01-159K07.g
ACCDH953249DH953250
length1,2071,077
definitionDH953249|Mus musculus domesticus DNA, BAC clone: B6Ng01-159K07, 5' end.DH953250|Mus musculus domesticus DNA, BAC clone: B6Ng01-159K07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,964,738 - 56,965,946)(56,900,086 - 56,901,166)
sequence
gaattccaggaaaatggttccctggggtcatgcactgagggtagggttcc
gaatgcccttggcaaatggctattacatggaagtttcccacaagtttggg
gcaatctctgaatgtaccataccacaaagttcctagtcctgccctcattg
atcacaccagcttctcctcctatcattgtctttcattttcagaatcatta
ctttcacttaacattattgtcacttgaatcagagagaaaggtaatctttg
ctaaattctctctcatcagactcagaattttgtatcatatccatcacttg
ttgaactgagtagcaagttgaccttgcctgtttacctgttgaagtgctca
gttcattacgtgctagcttcatggtcaagttcccctctgaaatcacttca
aaatacacccaaaacagatatttgcaattgggagtcatctgcaatcagct
gacatcatgctagctcgagacttagcagcaattgggtgttatttttagct
tttggtaacaaggtgtctgctattcctgctatactggtaactcactatga
tagacatttatgtcattctcactagagtgggaactctctggtgtatgtag
ggaaggactagaggaaggcattccatctatgaagcctcaggatgccatca
tgcttactgggtccagatcttccagtatggccgctttaaagtcatctgtg
tttctgccttcacccattctattgtatgtaaaccttcacccactgcagtg
ctgataagcccagtaaatacattggttccccaggtgaacattagtggaat
cacacctctatttgtgtttgggatcttaggaggaggtgtagacattgttt
atatctcccgcatagttttagcaacactgaactacttagaatttaccaga
tgtgtactttcactctggtcatgcattgatggaatacaaatgagtgtgat
ggtcgtttctttcagtgttggatagagataggaatttatgttctaaaatt
agatgggagtctgaggtccgtatttttttcttttaggattttcttcgcta
agtctgtttgctcatagaaagtgaggactacccctaatgacctttgagat
agataaatatgtgactctcaataaaaggttctgcgcgcctattgagaggc
tttgctatgtgtctaattagagtgctggctgagatatatctaaccagcaa
cgttata
gaattcttttgaagtttggcaagcagttaagcagttctggtttttcagaa
agatgaagccatcaaagctcaaggcaataacaatctgcagctgaaatggg
ctacagtctccacaatggcggtttcaattggccctgcaggagtcattcag
tagcagtctggtcaggctgtattctctcaaataaggaactgaccattctt
gggtagaggaagaagcaggaaatggagacgattttctgagcaatttagga
gtagagcactttcatttcaatgatagaggaacaataattggtaaaaatat
ctaccttgtagtggggacctcaaaattgtggaactaaagtccatcatgga
gccatgaaagaagggaagctggctaaaggaaagcacatttgctttgccct
aagattgggatgacagttccacccatgtatccatatgtggctaatgatca
actccccagtgttgctagaagaagacattcattgtattaactcacatggc
ctatttctagtggtgattccctttaaatttggcagaggttatctgtgatc
ctaacagaacagtcagtagtcaatgtcagaaaggagggtgaacagatgcc
cagcagcccgccaacactgataacaactccaaagaaaacagcatcctccc
tgaactactggccagaatcctatcacacaactttaaagaactaagacctt
gtgccaatagttatccttcactgtgccattccagtaggatgtttagtaat
tgttcagcttgagcaaatgtgctaattcattaaaaataaaaacaacatta
aactctcagtgaagaactgcttcaccatcctgaagcccagccttcaggat
gaagacagctcctaaccctttccctggttacatccagtaatgccagataa
aaatcacgaagaatcacagggattttgatttgactctgagaagcatgtgg
agataattaggaaaaagccctggatttgaggacaaacagaaggttccaaa
aaaatgtctccatccagcttcctaacttgagtttctcactacgcccctga
gtatctagaaagctagcttgtctacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_56964738_56965946
seq2: B6Ng01-159K07.b_49_1255 (reverse)

seq1  TATAACGTTGCTTTATTTAGATAAATCATCAGCAAGCAGTC--AATAGTA  48
      |||||||||||  |  ||||||| ||| ||||| |||| ||  | |||  
seq2  TATAACGTTGC--TGGTTAGATATATC-TCAGCCAGCACTCTAATTAGAC  47

seq1  ACAATAGCAA--GCACTCACTATGACTGCCGAGCATATTACTAGAAGTCA  96
      || |||||||   | |||| || |   || || | | ||| |   |||||
seq2  AC-ATAGCAAAGCCTCTCAATAGGCGCGCAGAACCTTTTATTGAGAGTCA  96

seq1  CATATTTAATCATCTCAAAGGTCAT--AGGGTAGTCCTCACTTTCTAATG  144
      ||||||||   ||||||||||||||   |||||||||||||||||| |||
seq2  CATATTTATCTATCTCAAAGGTCATTAGGGGTAGTCCTCACTTTCT-ATG  145

seq1  AGCAAACAGACTTAGCGAAGAAAATTCTGAAAGGAAAAAAATACTGAACC  194
      ||||||||||||||||||||||||| || ||| ||||||||||| | |||
seq2  AGCAAACAGACTTAGCGAAGAAAATCCT-AAAAGAAAAAAATAC-GGACC  193

seq1  TCAGACTCCCATCTAATTTTAGAACATAAATTCCTATCTCTTATCCAACA  244
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCAGACTCCCATCTAATTTTAGAACATAAATTCCTATCTC-TATCCAACA  242

seq1  CTGAAAGAAACGACCATCACACTCATTTGTATTCCATCAATGCATGACCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGAAACGACCATCACACTCATTTGTATTCCATCAATGCATGACCA  292

seq1  GAGTGAAAGTACACATCTGGTAAATTCTAAGTAGTTCAGTGTTGCTAAAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAAAGTACACATCTGGTAAATTCTAAGTAGTTCAGTGTTGCTAAAA  342

seq1  CTATGCGGGAGATATAAACAATGTCTACACCTCCTCCTAAGATCCCAAAC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCGGGAGATATAAACAATGTCTACACCTCCTCCTAAGATCCCAAAC  392

seq1  ACAAATAGAGGTGTGATTCCACTAATGTTCACCTGGGGAACCAATGTATT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAGAGGTGTGATTCCACTAATGTTCACCTGGGGAACCAATGTATT  442

seq1  TACTGGGCTTATCAGCACTGCAGTGGGTGAAGGTTTACATACAATAGAAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGGCTTATCAGCACTGCAGTGGGTGAAGGTTTACATACAATAGAAT  492

seq1  GGGTGAAGGCAGAAACACAGATGACTTTAAAGCGGCCATACTGGAAGATC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAAGGCAGAAACACAGATGACTTTAAAGCGGCCATACTGGAAGATC  542

seq1  TGGACCCAGTAAGCATGATGGCATCCTGAGGCTTCATAGATGGAATGCCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCAGTAAGCATGATGGCATCCTGAGGCTTCATAGATGGAATGCCT  592

seq1  TCCTCTAGTCCTTCCCTACATACACCAGAGAGTTCCCACTCTAGTGAGAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTAGTCCTTCCCTACATACACCAGAGAGTTCCCACTCTAGTGAGAA  642

seq1  TGACATAAATGTCTATCATAGTGAGTTACCAGTATAGCAGGAATAGCAGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAAATGTCTATCATAGTGAGTTACCAGTATAGCAGGAATAGCAGA  692

seq1  CACCTTGTTACCAAAAGCTAAAAATAACACCCAATTGCTGCTAAGTCTCG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGTTACCAAAAGCTAAAAATAACACCCAATTGCTGCTAAGTCTCG  742

seq1  AGCTAGCATGATGTCAGCTGATTGCAGATGACTCCCAATTGCAAATATCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCATGATGTCAGCTGATTGCAGATGACTCCCAATTGCAAATATCT  792

seq1  GTTTTGGGTGTATTTTGAAGTGATTTCAGAGGGGAACTTGACCATGAAGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGGGTGTATTTTGAAGTGATTTCAGAGGGGAACTTGACCATGAAGC  842

seq1  TAGCACGTAATGAACTGAGCACTTCAACAGGTAAACAGGCAAGGTCAACT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACGTAATGAACTGAGCACTTCAACAGGTAAACAGGCAAGGTCAACT  892

seq1  TGCTACTCAGTTCAACAAGTGATGGATATGATACAAAATTCTGAGTCTGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTCAGTTCAACAAGTGATGGATATGATACAAAATTCTGAGTCTGA  942

seq1  TGAGAGAGAATTTAGCAAAGATTACCTTTCTCTCTGATTCAAGTGACAAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAGAATTTAGCAAAGATTACCTTTCTCTCTGATTCAAGTGACAAT  992

seq1  AATGTTAAGTGAAAGTAATGATTCTGAAAATGAAAGACAATGATAGGAGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTAAGTGAAAGTAATGATTCTGAAAATGAAAGACAATGATAGGAGG  1042

seq1  AGAAGCTGGTGTGATCAATGAGGGCAGGACTAGGAACTTTGTGGTATGGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTGGTGTGATCAATGAGGGCAGGACTAGGAACTTTGTGGTATGGT  1092

seq1  ACATTCAGAGATTGCCCCAAACTTGTGGGAAACTTCCATGTAATAGCCAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAGAGATTGCCCCAAACTTGTGGGAAACTTCCATGTAATAGCCAT  1142

seq1  TTGCCAAGGGCATTCGGAACCCTACCCTCAGTGCATGACCCCAGGGAACC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAAGGGCATTCGGAACCCTACCCTCAGTGCATGACCCCAGGGAACC  1192

seq1  ATTTTCCTGGAATTC  1209
      |||||||||||||||
seq2  ATTTTCCTGGAATTC  1207

seq1: chr3_56900086_56901166
seq2: B6Ng01-159K07.g_68_1144

seq1  GAATTCTTTTGAAGTTTGGCAAGCAGTTAAGCAGTTCTGGTTTTTCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGAAGTTTGGCAAGCAGTTAAGCAGTTCTGGTTTTTCAGAA  50

seq1  AGATGAAGCCATCAAAGCTCAAGGCAATAACAATCTGCAGCTGAAATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAGCCATCAAAGCTCAAGGCAATAACAATCTGCAGCTGAAATGGG  100

seq1  CTACAGTCTCCACAATGGCGGTTTCAATTGGCCCTGCAGGAGTCATTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTCTCCACAATGGCGGTTTCAATTGGCCCTGCAGGAGTCATTCAG  150

seq1  TAGCAGTCTGGTCAGGCTGTATTCTCTCAAATAAGGAACTGACCATTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGTCTGGTCAGGCTGTATTCTCTCAAATAAGGAACTGACCATTCTT  200

seq1  GGGTAGAGGAAGAAGCAGGAAATGGAGACGATTTTCTGAGCAATTTAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGAGGAAGAAGCAGGAAATGGAGACGATTTTCTGAGCAATTTAGGA  250

seq1  GTAGAGCACTTTCATTTCAATGATAGAGGAACAATAATTGGTAAAAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGCACTTTCATTTCAATGATAGAGGAACAATAATTGGTAAAAATAT  300

seq1  CTACCTTGTAGTGGGGACCTCAAAATTGTGGAACTAAAGTCCATCATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTTGTAGTGGGGACCTCAAAATTGTGGAACTAAAGTCCATCATGGA  350

seq1  GCCATGAAAGAAGGGAAGCTGGCTAAAGGAAAGCACATTTGCTTTGCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGAAAGAAGGGAAGCTGGCTAAAGGAAAGCACATTTGCTTTGCCCT  400

seq1  AAGATTGGGATGACAGTTCCACCCATGTATCCATATGTGGCTAATGATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGGGATGACAGTTCCACCCATGTATCCATATGTGGCTAATGATCA  450

seq1  ACTCCCCAGTGTTGCTAGAAGAAGACATTCATTGTATTAACTCACATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCAGTGTTGCTAGAAGAAGACATTCATTGTATTAACTCACATGGC  500

seq1  CTATTTCTAGTGGTGATTCCCTTTAAATTTGGCAGAGGTTATCTGTGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCTAGTGGTGATTCCCTTTAAATTTGGCAGAGGTTATCTGTGATC  550

seq1  CTAACAGAACAGTCAGTAGTCAATGTCAGAAAGGAGGGTGAACAGATGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGAACAGTCAGTAGTCAATGTCAGAAAGGAGGGTGAACAGATGCC  600

seq1  CAGCAGCCCGCCAACACTGATAACAACTCCAAAGAAAACAGCATCCTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCCCGCCAACACTGATAACAACTCCAAAGAAAACAGCATCCTCCC  650

seq1  TGAACTACTGGCCAGAATCCTATCACACAACTTTAAAGAACTAAGACCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTACTGGCCAGAATCCTATCACACAACTTTAAAGAACTAAGACCTT  700

seq1  GTGCCAATAGTTATCCTTCACTGTGCCATTCCAGTAGGATGTTTAGTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAATAGTTATCCTTCACTGTGCCATTCCAGTAGGATGTTTAGTAAT  750

seq1  TGTTCAGCTTGAGCAAATGTGCTAATTCATTAAAAATAAAAACAACATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGCTTGAGCAAATGTGCTAATTCATTAAAAATAAAAACAACATTA  800

seq1  AACTCTCAGTGAAGAACTGCTTCACCATCCTGAAGCCCAGCCTTCAGGAA  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AACTCTCAGTGAAGAACTGCTTCACCATCCTGAAGCCCAGCCTTCAGG-A  849

seq1  TGAAGACAGCTCCTAACCCTTTCCCTGGTTACATCCAGTAATGCCAGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACAGCTCCTAACCCTTTCCCTGGTTACATCCAGTAATGCCAGATA  899

seq1  AAAATCACGAAGAATCACAGGGATTTTGATTTGACTCTGAGAAGCATGT-  949
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AAAATCACGAAGAATCACAGGGATTTTGATTTGACTCTGAGAAGCATGTG  949

seq1  GAGATAATTAGGAAAAAGCACTGGATTTGA-GACAAACAGAAGGGTTCCA  998
      ||||||||||||||||||| |||||||||| ||||||||||| |||||| 
seq2  GAGATAATTAGGAAAAAGCCCTGGATTTGAGGACAAACAGAA-GGTTCC-  997

seq1  AAAAAAATGTCTCCATCCAGCTTCTCTAACTTGAGTTTTCTCAACTACG-  1047
      |||||||||||||||||||||||| |||||||||| |||||| |||||| 
seq2  AAAAAAATGTCTCCATCCAGCTTC-CTAACTTGAG-TTTCTC-ACTACGC  1044

seq1  CACTGAGTATCCATGAGTGCTAGCTTGTCTACAC  1081
      | ||||||||| | ||  ||||||||||||||||
seq2  CCCTGAGTATCTA-GAAAGCTAGCTTGTCTACAC  1077