BAC Information

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BAC

Clone NameB6Ng01-160D01
Chromosome3 (Build37)5 (Build37)
Map Location 41,059,143 - 41,059,73783,864,375 - 83,865,609
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160D01.bB6Ng01-160D01.g
ACCDH953634DH953635
length9431,212
definitionDH953634|Mus musculus domesticus DNA, BAC clone: B6Ng01-160D01, 5' end.DH953635|Mus musculus domesticus DNA, BAC clone: B6Ng01-160D01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,143 - 41,059,737)(83,864,375 - 83,865,609)
sequence
gaattctttgtttagctctgagccccatgttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtcct
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgcgtcacagaagctttgtaatttta
tgaggtcccatttgttgattctcgatcttacagcacaagccattgctgtt
ctattcaggagtttttttcactgtgcccatatcttcaaggcttttcccta
ctttctcctctataagtttcagtgtctgtggttttatgtggaggtcctta
atccacttagatttgaccttaatacaaggagataggaagagatcaatttg
cattcctctacatgataacagccagttttcccaacaccatttgttgaaaa
tgctgtcctttttccactggttggttttagctcccttgtcaaagatcaag
tgaccataggtgtgtaggttcatttctgggtcttcaattctattccattg
gtctgtttgtctgtccctataccaggaccatgcagtttttatcacaattg
ttctgtagtacaactttcggtcagagatggtgattccaacagagtttttt
ttttttttttttttttttccttgagaagattttttgctatcctaggattt
ttgttattccagatgaatttgcagattgcacattctaattcgttgaagaa
ttgagtaggaattttgatgggtattacaatgaatctgtagatagcttttg
gcaggatacccattttactatattgatcctgccaatccctgagcatggga
gatctttccatctttttgagatcttctttaatttctttcttcagagactt
gaagtgcttatcatacagatctttcacttccttagttagagtc
gaattcatacacactgagagaagaattggaatatcaccatctttcaattc
catagtgcaaacactgtaggaactaataattttcttttaactgaaaagtc
attggttgccatcatggcccattggtgtatactcctttcttataaagaaa
ttatgaagttttgaatatttatgggtctgttatgcttagggagcccatct
ctgatttccctcttaccattttaagacatgcaatatgaccatgtagtcct
gatttcagttgacaagtttgcagctagaagcagtttgttaagctccatat
tggtccgcatgcctaggttaatgttagaaatattgtaattgtttatttgc
aaaatgaatgtgtgaaatcttcctgccttagcaattgcactaaaaatgaa
gcaaactcttgttttacataaaagtgccattgaaagcaagacagagtttg
acagctattagcctatattctatggagtaacttagagcaggacatgatgg
atatctacaatgagccaacatggatatttggacaatcatctgctgttcag
aagaggggttcttatttagggaaattttgagataaaccaccaaagtcatt
gaattattgccccacccacctaccctccacataacaaagcctaagaataa
gaattataatattattttgatgataaaacagaaaataagttaaaaatata
ggtggccagtggcttaggaagaaaagaggagagtacaatgaatagataat
gtttatgagatgcagctggcacaagtatgaattttcagacatgactacca
gacttaataaatataagtcattagtgattatgacagaacgactgtatagt
gcggggctcacaaaaagcctaaggcaaaaggttaaaaggatgagagaaaa
tcaatttgaggcagtgatatcagcaattcctttaaagacttttgcccaaa
gcagagttcctagatgtaaacagttattcacttaggaagtctcttgctct
catctcaagaggaaatgttagaaattacatttggggtatttttaacatgt
accatgatgacaagtcagaatgggagtaagctgcccttggacagacttca
acatatgtatttgagaaaccaaatctgtctctaactaatgcctgggaact
ttagtatgaagcaagatagccttatactggtccacctattaaatttaaat
atatcctaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059143_41059737
seq2: B6Ng01-160D01.b_47_643 (reverse)

seq1  ATTGTGATAAAAACTGCATGGTACTGGTATAGTGACAGACAAGCAGACCA  50
      |||||||||||||||||||||| ||||||||| ||||||||| |||||||
seq2  ATTGTGATAAAAACTGCATGGTCCTGGTATAGGGACAGACAAACAGACCA  50

seq1  ATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCACT  100
      ||||||||||||||||||| |||||| ||| | |||||||||||||||||
seq2  ATGGAATAGAATTGAAGACCCAGAAATGAACCTACACACCTATGGTCACT  100

seq1  TGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATT  150
      ||||||| ||||||||||||||||||| |||||||||||| |||||||||
seq2  TGATCTTTGACAAGGGAGCTAAAACCAACCAGTGGAAAAAGGACAGCATT  150

seq1  TTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCG  200
      |||||||||||||| ||| | |||||| |||||||||||||| |||||| 
seq2  TTCAACAAATGGTGTTGGGAAAACTGGCTGTTATCATGTAGAGGAATGCA  200

seq1  AATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCA  250
      ||||||||   ||||||||||||||| ||||||||||||||||||||| |
seq2  AATTGATCTCTTCCTATCTCCTTGTATTAAGGTCAAATCTAAGTGGATTA  250

seq1  AGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTG  300
      |||| | ||||||||||||| |||||||||||||||||||||||||||| 
seq2  AGGACCTCCACATAAAACCACAGACACTGAAACTTATAGAGGAGAAAGTA  300

seq1  GGGAAAAGCCTTGAAGATATGGTCACAG-GGGAAAAATTCCTGCATAGAA  349
      |||||||||||||||||||||| ||||| |  ||||| ||||| ||||||
seq2  GGGAAAAGCCTTGAAGATATGGGCACAGTGAAAAAAACTCCTGAATAGAA  350

seq1  CAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATG  399
      |||||||||||||||||||||||| ||||||  |||||||||||||||| 
seq2  CAGCAATGGCTTGTGCTGTAAGATCGAGAATCAACAAATGGGACCTCATA  400

seq1  AAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG  449
      ||| | |||||||||||  | |||||||||||||||||||||||||||||
seq2  AAATTACAAAGCTTCTGTGACGCAAAAGACACCGTCAATAAGACAAAAAG  450

seq1  G-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGG  498
      | |||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GCCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGAG  500

seq1  GACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAA  548
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  GACTAATATCCAATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAA  550

seq1  TCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  595
      ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCAAATAACCCCATTAAAACATGGGGCTCAGAGCTAAACAAAGAATT  597

seq1: chr5_83864375_83865609
seq2: B6Ng01-160D01.g_66_1277

seq1  GAATTCATACACACTGAGAGAAGAATTGGAATATCACCATCTTTCAATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACACACTGAGAGAAGAATTGGAATATCACCATCTTTCAATTC  50

seq1  CATAGTGCAAACACTGTAGGAACTAATAATTTTCTTTTAACTGAAAAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGCAAACACTGTAGGAACTAATAATTTTCTTTTAACTGAAAAGTC  100

seq1  ATTGGTTGCCATCATGGCCCATTGGTGTATACTCCTTTCTTATAAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTGCCATCATGGCCCATTGGTGTATACTCCTTTCTTATAAAGAAA  150

seq1  TTATGAAGTTTTGAATATTTATGGGTCTGTTATGCTTAGGGAGCCCATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAGTTTTGAATATTTATGGGTCTGTTATGCTTAGGGAGCCCATCT  200

seq1  CTGATTTCCCTCTTACCATTTTAAGACATGCAATATGACCATGTAGTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTCCCTCTTACCATTTTAAGACATGCAATATGACCATGTAGTCCT  250

seq1  GATTTCAGTTGACAAGTTTGCAGCTAGAAGCAGTTTGTTAAGCTCCATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAGTTGACAAGTTTGCAGCTAGAAGCAGTTTGTTAAGCTCCATAT  300

seq1  TGGTCCGCATGCCTAGGTTAATGTTAGAAATATTGTAATTGTTTATTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCGCATGCCTAGGTTAATGTTAGAAATATTGTAATTGTTTATTTGC  350

seq1  AAAATGAATGTGTGAAATCTTCCTGCCTTAGCAATTGCACTAAAAATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAATGTGTGAAATCTTCCTGCCTTAGCAATTGCACTAAAAATGAA  400

seq1  GCAAACTCTTGTTTTACATAAAAGTGCCATTGAAAGCAAGACAGAGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTCTTGTTTTACATAAAAGTGCCATTGAAAGCAAGACAGAGTTTG  450

seq1  ACAGCTATTAGCCTATATTCTATGGAGTAACTTAGAGCAGGACATGATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTATTAGCCTATATTCTATGGAGTAACTTAGAGCAGGACATGATGG  500

seq1  ATATCTACAATGAGCCAACATGGATATTTGGACAATCATCTGCTGTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTACAATGAGCCAACATGGATATTTGGACAATCATCTGCTGTTCAG  550

seq1  AAGAGGGGTTCTTATTTAGGGAAATTTTGAGATAAACCACCAAAGTCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGGTTCTTATTTAGGGAAATTTTGAGATAAACCACCAAAGTCATT  600

seq1  GAATTATTGCCCCACCCACCTACCCTCCACATAACAAAGCCTAAGAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATTGCCCCACCCACCTACCCTCCACATAACAAAGCCTAAGAATAA  650

seq1  GAATTATAATATTATTTTGATGATAAAACAGAAAATAAGTTAAAAATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATAATATTATTTTGATGATAAAACAGAAAATAAGTTAAAAATATA  700

seq1  GGTGGCCAGTGGCTTAGGAAGAAAAGAGGAGAGTACAATGAATAGATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCAGTGGCTTAGGAAGAAAAGAGGAGAGTACAATGAATAGATAAT  750

seq1  GTTTATGAGATGCAGCTGGCACAAGTATGAATTTTCAGACATGACTACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGAGATGCAGCTGGCACAAGTATGAATTTTCAGACATGACTACCA  800

seq1  GACTTAATAAATATAAGTCATTAGTGATTATGACAGAACGACTGTATAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAATAAATATAAGTCATTAGTGATTATGACAGAACGACTGTATAGT  850

seq1  GCGGGGCTCACAAAAAGCCTAAGGCAAAAGGTTAAAAGGATGAGAGAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGGCTCACAAAAAGCCTAAGGCAAAAGGTTAAAAGGATGAGAGAAAA  900

seq1  TCAATTTGAGGCAGTGAATATCAGCAATTCCTTTAAAGACTTTTGCCCCA  950
      |||||||||||||||| |||||||||||||||||||||||||||| ||||
seq2  TCAATTTGAGGCAGTG-ATATCAGCAATTCCTTTAAAGACTTTTG-CCCA  948

seq1  AAGCAAGAGTTCCTAAGATGTAAACAGTTATTCACTTAGGGAAGTCTCTT  1000
      |||| ||||||||| ||||||||||||||||||||||| |||||||||||
seq2  AAGC-AGAGTTCCT-AGATGTAAACAGTTATTCACTTA-GGAAGTCTCTT  995

seq1  GCTCTCATCTCAAAGAGGAAATGTTAGAAAATAACATTTTGGGGTATTTT  1050
      ||||||||||| ||||||||||||||| |||| ||| |||||||||||||
seq2  GCTCTCATCTC-AAGAGGAAATGTTAG-AAATTACA-TTTGGGGTATTTT  1042

seq1  TAACAATGTACCATGATGACAAAGTCAGAATTGGAGTAAAGCTG-CCTTT  1099
      |||| ||||||||||||||| |||||||||| ||||| |||||| |||| 
seq2  TAAC-ATGTACCATGATGAC-AAGTCAGAATGGGAGT-AAGCTGCCCTTG  1089

seq1  GACAGACTTTCAACATATGTATTTGAAGGAAACCCAAAATCTTGTCTCAT  1149
      ||||||| ||||||||||||||||||  ||||||  ||||| |||||| |
seq2  GACAGAC-TTCAACATATGTATTTGA--GAAACC--AAATC-TGTCTC-T  1132

seq1  AAAATTAAATGCTTTGGACATTAAAGTAATGAAAGGACAAAGTAGCTTTA  1199
      ||     ||||| | ||| | |  ||| |||||    |||  |||| |||
seq2  AA---CTAATGCCTGGGA-ACTTTAGT-ATGAA---GCAAGATAGCCTTA  1174

seq1  TACTGTGTACAACTATTAAATTTAAATAT---CTAAAGA  1235
      ||||| || || |||||||||||||||||   |||||||
seq2  TACTG-GTCCACCTATTAAATTTAAATATATCCTAAAGA  1212