BAC Information

Click to search

BAC

Clone NameB6Ng01-160D05
Chromosome3 (Build37)10 (Build37)
Map Location 41,059,438 - 41,059,73729,267,645 - 29,268,480
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160D05.bB6Ng01-160D05.g
ACCDH953642DH953643
length989836
definitionDH953642|Mus musculus domesticus DNA, BAC clone: B6Ng01-160D05, 5' end.DH953643|Mus musculus domesticus DNA, BAC clone: B6Ng01-160D05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,438 - 41,059,737)(29,267,645 - 29,268,480)
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatccgatttgggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttatcgattcttgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatatcttcaaggcttttccctac
ttccaagttctttatgaaggcactcagagctatgattttttctcttagca
ctgctttcattgtgtcccataagtttgggcatactgtgccttcattttca
ttaaattctaaagtctttaatttctttctttatttcttcgttgatcaagt
tatcatcgaatggggcattgttcagcttcaattcatatatgggctttctg
ttgtttctgttgttattgaagaccagccttagtccatggtgatctgatat
gatgcatgggattatttcagttttcttgtatctgtcgaggcctgttttgt
gaccaattatatggttgattttaaaaaggtaccctgaggtgttgataaga
aggtatattcttttgttttaggataagctgttctatagatatctgttaaa
tccatttgctccataacttttgttggtttcactgtgtctctgtttagttt
gtgtttccatgaaatgtccattgagtgtgggtgttgaagtctcccactat
tatcgtgtaaggttcaatgtgtgctttgagctttagtagagtttctttta
cgaatgtggctactcttgcatttgtagcatggatgttcagaattgagagt
tctttttggtagattgtcttttaatgagtatgaattgtcttctcatcttt
ttgataaagtataaaatgacccatcctatgtctgtacaa
gaattcacatttcccaccacttctttacgcatgaggtataaattggaaag
aaaggagaacaaacctggcattagttactttaagaaacatacttcaagag
tcgggattgaatccatgacattctcatttgagtgctactattgtcatggc
aacacataggatgccttggatgaggtccctgactggacagagcatgggtg
agaatcacagctgtgtggcccttgtgctgctaatatttctcttgtcaggt
ttggaatccctcattctgaataggctccagcatatataaaccaacagata
tgcagcatgtgagcaaataaaactttaaaaataaggaactgataaggaaa
cataaagaaagaatatattcaaaaggtctcattgacaagtgggcaagaat
gtctgaaagatagaagagttgacttctttggaaaaaaaaataggtccact
gctactaaatgaccagctctaaaagttcaatgatctattttatgtgaagt
gtgttttgtttgctattgtttttgtttgttgctattcttgttatgttttg
agacagtttctcctttcctctagccaaggttaacaatgaattcctggttt
tcctgctttatttttatttaaactctgagattatacatttgtgcaaccac
agctatcctatcattaaataatgattttctgtagtcttacaatgttcatc
actataatggaatactggaaacaggccaactttatgaagactagagcttt
ataagactgttcacagcatcagcttggttcatgacaagagcatgcaaaaa
ggagagagagagggagaggagagggagagggagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059438_41059737
seq2: B6Ng01-160D05.b_49_349 (reverse)

seq1  AAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCAT  50
      |||| ||||||||||||||||||||||  |||||||||||||||||| ||
seq2  AAGTAGGGAAAAGCCTTGAAGATATGGGTACAGGGGAAAAATTCCTGAAT  50

seq1  AGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCT  100
      ||||||||||||||||||||||||||||  ||||| || |||||||||||
seq2  AGAACAGCAATGGCTTGTGCTGTAAGATCAAGAATCGATAAATGGGACCT  100

seq1  CATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAA  150
      ||| ||| |||||||||||||||| |||||||||||||||||||||||||
seq2  CATAAAATTGCAAAGCTTCTGCAAAGCAAAAGACACCGTCAATAAGACAA  150

seq1  AAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGAT  199
      ||||| |||||||||||||||||||||||||||||||||| ||||| |||
seq2  AAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCCAAATCGGAT  200

seq1  AGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAG  249
      |||||||||||||||||||||||| ||||||||||||||||||| |||||
seq2  AGGGGACTAATATCCAATATATATAAAGAACTCAAGAAGGTGGACTCCAG  250

seq1  AAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAAT  299
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTGAACAAAGAAT  300

seq1  T  300
      |
seq2  T  301

seq1: chr10_29267645_29268480
seq2: B6Ng01-160D05.g_68_903

seq1  GAATTCACATTTCCCACCACTTCTTTACGCATGAGGTATAAATTGGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTTCCCACCACTTCTTTACGCATGAGGTATAAATTGGAAAG  50

seq1  AAAGGAGAACAAACCTGGCATTAGTTACTTTAAGAAACATACTTCAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGAACAAACCTGGCATTAGTTACTTTAAGAAACATACTTCAAGAG  100

seq1  TCGGGATTGAATCCATGACATTCTCATTTGAGTGCTACTATTGTCATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGATTGAATCCATGACATTCTCATTTGAGTGCTACTATTGTCATGGC  150

seq1  AACACATAGGATGCCTTGGATGAGGTCCCTGACTGGACAGAGCATGGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATAGGATGCCTTGGATGAGGTCCCTGACTGGACAGAGCATGGGTG  200

seq1  AGAATCACAGCTGTGTGGCCCTTGTGCTGCTAATATTTCTCTTGTCAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCACAGCTGTGTGGCCCTTGTGCTGCTAATATTTCTCTTGTCAGGT  250

seq1  TTGGAATCCCTCATTCTGAATAGGCTCCAGCATATATAAACCAACAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATCCCTCATTCTGAATAGGCTCCAGCATATATAAACCAACAGATA  300

seq1  TGCAGCATGTGAGCAAATAAAACTTTAAAAATAAGGAACTGATAAGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCATGTGAGCAAATAAAACTTTAAAAATAAGGAACTGATAAGGAAA  350

seq1  CATAAAGAAAGAATATATTCAAAAGGTCTCATTGACAAGTGGGCAAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGAAAGAATATATTCAAAAGGTCTCATTGACAAGTGGGCAAGAAT  400

seq1  GTCTGAAAGATAGAAGAGTTGACTTCTTTGGAAAAAAAAATAGGTCCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAAGATAGAAGAGTTGACTTCTTTGGAAAAAAAAATAGGTCCACT  450

seq1  GCTACTAAATGACCAGCTCTAAAAGTTCAATGATCTATTTTATGTGAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTAAATGACCAGCTCTAAAAGTTCAATGATCTATTTTATGTGAAGT  500

seq1  GTGTTTTGTTTGCTATTGTTTTTGTTTGTTGCTATTCTTGTTATGTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTGTTTGCTATTGTTTTTGTTTGTTGCTATTCTTGTTATGTTTTG  550

seq1  AGACAGTTTCTCCTTTCCTCTAGCCAAGGTTAACAATGAATTCCTGGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTTTCTCCTTTCCTCTAGCCAAGGTTAACAATGAATTCCTGGTTT  600

seq1  TCCTGCTTTATTTTTATTTAAACTCTGAGATTATACATTTGTGCAACCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTTATTTTTATTTAAACTCTGAGATTATACATTTGTGCAACCAC  650

seq1  AGCTATCCTATCATTAAATAATGATTTTCTGTAGTCTTACAATGTTCATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCCTATCATTAAATAATGATTTTCTGTAGTCTTACAATGTTCATC  700

seq1  ACTATAATGGAATACTGGAAACAGGCCAACTTTATGAAGACTAGAGCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAATGGAATACTGGAAACAGGCCAACTTTATGAAGACTAGAGCTTT  750

seq1  ATAAGACTGTTCACAGCATCAGCTTGGTTCATGACAAGAGCATGCAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACTGTTCACAGCATCAGCTTGGTTCATGACAAGAGCATGCAAAAA  800

seq1  GGAGAGAGAGAGGGAGAGGAGAGGGAGAGGGAGAGG  836
      ||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGAGAGGGAGAGGAGAGGGAGAGGGAGAGG  836