BAC Information

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BAC

Clone NameB6Ng01-160L23
Chromosome3 (Build37)6 (Build37)
Map Location 41,059,176 - 41,059,737129,522,802 - 129,523,960
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160L23.bB6Ng01-160L23.g
ACCDH954041DH954042
length9121,148
definitionDH954041|Mus musculus domesticus DNA, BAC clone: B6Ng01-160L23, 5' end.DH954042|Mus musculus domesticus DNA, BAC clone: B6Ng01-160L23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,176 - 41,059,737)(129,522,802 - 129,523,960)
sequence
gaattctttgtttagctctgagtcccatattttaacggggttatttgata
tttctggagtccaccttcttaagttctttatatatattggatattagtac
cctatctgatttaggacaggtaaagatcctttcccaatctgttggtggcc
tttctgtcttattgacggtgtcttttgccttacagaagcttttcaatttt
atgaggtcccatttgtcaatcctcgatcttaacagcacaagccattaatg
ttctattcaggaatttttcccctgtgtccatatcttcgaggcttttcccc
actttctcctctataagtttcagtgcctctggttttatgtggagttcctt
gatccacttagatttgaccttagtacaaggagataagaatggatcaattc
acattattctacatgataaccgccagttgtgccagcaccatttgttgaaa
atgctgtttttttccactggatggttttatctcccttgtcaaagatcaag
tgaccataggtgtgtgggttcatttctggatcttcaattctattccattg
ttctacttgtctgtctctagcaaagaggctagacattattattttttaag
atttatttacttattttatgtatgtgagtacattgttgctgtcttcagac
atacaagaagagagcatcagataccattgtagacagttgtgagccaccat
gtggttggctggaattgaaatcaaaacctttggaagagcagtcagtgagc
ttaaccactgcgccatctctctagccttagatatacattctttttttttt
tttttactatcttacatttctttttttattagatattttcttcattacat
ttcaaatgttatcccaaagtccctataccctccctcacctgctcccttac
ccactcactccc
gaattcaagaacgatctgtagttcctgccagaattttgggaataatgtag
gagatatagccatactttttcccccacaggctttgataaaaaacacctgt
gacaaaggcatcacacaccattgcaggtagcacatcctgcctaaagctac
ctttcatgaaacttccatggatgttccactgagtagggagtgctgcagag
gcagaccaatagagacaagatttctttttctttcttttggttaaggttct
aagagtgatttcagggttcttatccagcaagacttaatccgaaaatttga
aagctgtctcctgaaaacactgttcaatcaagcctttctctcaggcaaaa
cacaaagagaaagtccttgtccttgtgtatgggcagagtctactctccct
ctctgaccgttccatgtttcaatccagagcactcaggagggttggatcta
gtacaagttttgagttttatgattttcaaatcacctgaaagaagcttcta
gatcttgctttgctctccttagttgctggttctattcatctacagagtag
ttattccttcccaccatgtgaatatgcacacacacaccgtcgaattacag
atccttttgagcttcactgccagggtaaagtgccatactgactcatgaag
ttattcactcaacttataagaaacctacttgagggtgtgttgaaaacaga
tacaggaagagagatatctgcccctctaccttgatagcctttttgtatga
aaatcagaattcctgctgagtatagttgtacagtcctgtgaaacaaggag
cacaaaagccccatgtgaagttcttgtcttagtgccatgtcagatttttt
ttttctttttaagatttaatgaggatataggctccagaaagttacatcca
acttataaagtcaggaggagaccatcacttaaatggatgtgaatgcagtt
gtggttactcatgtttcagagagttgctttgacagcaaagctaagaagct
gcacacaggaccactccaaacagagtgatttcattgttactaagaaatca
gaagttagcttcttaggaagtgctatatcagcctgtaaattctcatttct
aattgaaatcatttttttctacagcccttaaactagacttgaagtctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059176_41059737
seq2: B6Ng01-160L23.b_29_592 (reverse)

seq1  GACAGACAAGCAGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCC  50
      |||||||||| ||| ||||||||||||||||||||  |||||| ||| ||
seq2  GACAGACAAGTAGAACAATGGAATAGAATTGAAGATCCAGAAATGAACCC  50

seq1  ACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGT  100
      |||||||||||||||||||||||| |||||||||| ||||||||||||||
seq2  ACACACCTATGGTCACTTGATCTTTGACAAGGGAGATAAAACCATCCAGT  100

seq1  GGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTA  150
      |||||||| |||||||||||||||||||||||||||||||||||  ||||
seq2  GGAAAAAA-ACAGCATTTTCAACAAATGGTGCTGGCACAACTGGCGGTTA  149

seq1  TCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGT  200
      |||||||||| |||| ||||||||||| || |||||||||||||||||||
seq2  TCATGTAGAATAATGTGAATTGATCCATTCTTATCTCCTTGTACTAAGGT  199

seq1  CAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAAAC  250
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  CAAATCTAAGTGGATCAAGGAACTCCACATAAAACCAGAGGCACTGAAAC  249

seq1  TTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAA  300
      |||||||||||||||||||||||||||| |||||||||| ||||||||||
seq2  TTATAGAGGAGAAAGTGGGGAAAAGCCTCGAAGATATGGACACAGGGGAA  299

seq1  AAATTCCTGCATAGAACAGCAATGGCTTGTGCTG-TAAGATTGAGAATAG  349
      ||||||||| ||||||||  |||||||||||||| |||||| ||| || |
seq2  AAATTCCTGAATAGAACATTAATGGCTTGTGCTGTTAAGATCGAGGATTG  349

seq1  ACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACC  399
      |||||||||||||||| ||| || |||||||||| |||||||||||||||
seq2  ACAAATGGGACCTCATAAAATTGAAAAGCTTCTGTAAGGCAAAAGACACC  399

seq1  GTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTA  448
      |||||||||||| ||||| |||||||||||||||||||||||||||||| 
seq2  GTCAATAAGACAGAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTG  449

seq1  TCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAGA  498
      ||||||||||||||||| ||||||||||||||||||| ||||||| ||||
seq2  TCCTAAATCAGATAGGGTACTAATATCCAATATATATAAAGAACTTAAGA  499

seq1  AGGTGGATTCCAGAAA-ATCAAATAACCCCATTAAAAAATGGGGCTCAGA  547
      ||||||| |||||||| ||||||||||||| |||||| ||||| ||||||
seq2  AGGTGGACTCCAGAAATATCAAATAACCCCGTTAAAATATGGGACTCAGA  549

seq1  GCTAAACAAAGAATT  562
      |||||||||||||||
seq2  GCTAAACAAAGAATT  564

seq1: chr6_129522802_129523960
seq2: B6Ng01-160L23.g_67_1214

seq1  GAATTCAAGAACGATCTGTAGTTCCTGCCAGAATTTTGGGAATAATGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAACGATCTGTAGTTCCTGCCAGAATTTTGGGAATAATGTAG  50

seq1  GAGATATAGCCATACTTTTTCCCCCACAGGCTTTGATAAAAAACACCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATAGCCATACTTTTTCCCCCACAGGCTTTGATAAAAAACACCTGT  100

seq1  GACAAAGGCATCACACACCATTGCAGGTAGCACATCCTGCCTAAAGCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGGCATCACACACCATTGCAGGTAGCACATCCTGCCTAAAGCTAC  150

seq1  CTTTCATGAAACTTCCATGGATGTTCCACTGAGTAGGGAGTGCTGCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATGAAACTTCCATGGATGTTCCACTGAGTAGGGAGTGCTGCAGAG  200

seq1  GCAGACCAATAGAGACAAGATTTCTTTTTCTTTCTTTTGGTTAAGGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACCAATAGAGACAAGATTTCTTTTTCTTTCTTTTGGTTAAGGTTCT  250

seq1  AAGAGTGATTTCAGGGTTCTTATCCAGCAAGACTTAATCCGAAAATTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGATTTCAGGGTTCTTATCCAGCAAGACTTAATCCGAAAATTTGA  300

seq1  AAGCTGTCTCCTGAAAACACTGTTCAATCAAGCCTTTCTCTCAGGCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTCTCCTGAAAACACTGTTCAATCAAGCCTTTCTCTCAGGCAAAA  350

seq1  CACAAAGAGAAAGTCCTTGTCCTTGTGTATGGGCAGAGTCTACTCTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGAGAAAGTCCTTGTCCTTGTGTATGGGCAGAGTCTACTCTCCCT  400

seq1  CTCTGACCGTTCCATGTTTCAATCCAGAGCACTCAGGAGGGTTGGATCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACCGTTCCATGTTTCAATCCAGAGCACTCAGGAGGGTTGGATCTA  450

seq1  GTACAAGTTTTGAGTTTTATGATTTTCAAATCACCTGAAAGAAGCTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGTTTTGAGTTTTATGATTTTCAAATCACCTGAAAGAAGCTTCTA  500

seq1  GATCTTGCTTTGCTCTCCTTAGTTGCTGGTTCTATTCATCTACAGAGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTGCTTTGCTCTCCTTAGTTGCTGGTTCTATTCATCTACAGAGTAG  550

seq1  TTATTCCTTCCCACCATGTGAATATGCACACACACACCGTCGAATTACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCTTCCCACCATGTGAATATGCACACACACACCGTCGAATTACAG  600

seq1  ATCCTTTTGAGCTTCACTGCCAGGGTAAAGTGCCATACTGACTCATGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTTGAGCTTCACTGCCAGGGTAAAGTGCCATACTGACTCATGAAG  650

seq1  TTATTCACTCAACTTATAAGAAACCTACTTGAGGGTGTGTTGAAAACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCACTCAACTTATAAGAAACCTACTTGAGGGTGTGTTGAAAACAGA  700

seq1  TACAGGAAGAGAGATATCTGCCCCTCTACCTTGATAGCCTTTTTGTATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAAGAGAGATATCTGCCCCTCTACCTTGATAGCCTTTTTGTATGA  750

seq1  AAATCAGAATTCCTGCTGAGTATAGTTGTACAGTCCTGTGAAACAAGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGAATTCCTGCTGAGTATAGTTGTACAGTCCTGTGAAACAAGGAG  800

seq1  CACAAAAGCCCCATGTGAAGTTCTTGTCTTAGTGCCATGTCAGA-TTTCT  849
      |||||||||||||||||||||||||||||||||||||||||||| ||| |
seq2  CACAAAAGCCCCATGTGAAGTTCTTGTCTTAGTGCCATGTCAGATTTTTT  850

seq1  TTTTCTTTTTAAGATTTAATGAGGATATAGGCTCCAGAAAGTTAACATCC  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTTCTTTTTAAGATTTAATGAGGATATAGGCTCCAGAAAGTT-ACATCC  899

seq1  AACTTATAAAGTCAGGAGGAGACCAATCAACTTAAAAATGGATGTGAATG  949
      |||||||||||||||||||||||| ||| ||||  |||||||||||||||
seq2  AACTTATAAAGTCAGGAGGAGACC-ATC-ACTT--AAATGGATGTGAATG  945

seq1  CAGTTGTGGTTACTCATGTTCCAGAGAAGTTGCCTTTGACAAGCAAAGCA  999
      |||||||||||||||||||| ||||| ||||| ||||||| |||||||| 
seq2  CAGTTGTGGTTACTCATGTTTCAGAG-AGTTG-CTTTGAC-AGCAAAGCT  992

seq1  AAGAAGCTGCACACAGGACCACTCCACAACAGAGTGAATCTCATTGTTAC  1049
      |||||||||||||||||||||||||| ||||||||| || ||||||||||
seq2  AAGAAGCTGCACACAGGACCACTCCA-AACAGAGTG-ATTTCATTGTTAC  1040

seq1  TACAGAAATCAG-AGTAGCCATCTAGGAAAGTGCTAATACCAGTCTGTAA  1098
      || ||||||||| |||   | |||  | ||||||| ||| ||| ||||||
seq2  TA-AGAAATCAGAAGTTAGCTTCTTAGGAAGTGCT-ATATCAGCCTGTAA  1088

seq1  ATATCTCATTTCCTAATATGAAATCATTTTTTTCTACAGCC--TAAACTA  1146
      || |||||||| ||||| |||||||||||||||||||||||  |||||||
seq2  AT-TCTCATTT-CTAAT-TGAAATCATTTTTTTCTACAGCCCTTAAACTA  1135

seq1  GACTTGAAGTCTT  1159
      |||||||||||||
seq2  GACTTGAAGTCTT  1148