BAC Information

Click to search

BAC

Clone NameB6Ng01-160M04
Chromosome3 (Build37)
Map Location 119,445,111 - 119,598,400
singlet/doubletdoublet
Overlap genePtbp2
Upstream geneDpyd, LOC100043275, LOC100043278
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160M04.bB6Ng01-160M04.g
ACCDH954051DH954052
length301270
definitionDH954051|Mus musculus domesticus DNA, BAC clone: B6Ng01-160M04, 5' end.DH954052|Mus musculus domesticus DNA, BAC clone: B6Ng01-160M04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,598,100 - 119,598,400)(119,445,111 - 119,445,380)
sequence
cttgaatagacattgtctgtgttttaggatggtccatcagaattttaaat
tgcttacagtgactgtagggacttgagtccagtcaaagcattgtgagtgg
attcatcatggtggaaaagcaacttctgacctaaaactggcagacagtta
ataagcatgactagacagttagtaagcatgactagatagctaatgagtat
gactcacctgcagtttttttagctactgtgactctcctcggtctttcctc
tccacgactcaggttaggattagaattattgaattatttgggggtggggg
a
atgttgaaaaaattatgcaagcttcatttcaagctgtatttacaatccca
agaaagaatagtgatacacaaaccagtcgtatggtgggtgcagccagcag
accacaatgaactcgctagaacaaaggctactgtcagtgaaagctaaaca
ttatttgtaacaagcaaaggcttctcaaatattcctactttcaaaaacag
tttatgacccagggtgggggaatgctagggcagtgaggcaggagtgtgct
ggggggtgggggtagaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_119598100_119598400
seq2: B6Ng01-160M04.b_50_350 (reverse)

seq1  TCCCCCACCCCCAAATAATTCAATAATTCTAATCCTAACCTGAGTCGTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCACCCCCAAATAATTCAATAATTCTAATCCTAACCTGAGTCGTGG  50

seq1  AGAGGAAAGACCGAGGAGAGTCACAGTAGCTAAAAAAACTGCAGGTGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAAGACCGAGGAGAGTCACAGTAGCTAAAAAAACTGCAGGTGAGT  100

seq1  CATACTCATTAGCTATCTAGTCATGCTTACTAACTGTCTAGTCATGCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTCATTAGCTATCTAGTCATGCTTACTAACTGTCTAGTCATGCTTA  150

seq1  TTAACTGTCTGCCAGTTTTAGGTCAGAAGTTGCTTTTCCACCATGATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGTCTGCCAGTTTTAGGTCAGAAGTTGCTTTTCCACCATGATGAA  200

seq1  TCCACTCACAATGCTTTGACTGGACTCAAGTCCCTACAGTCACTGTAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCACAATGCTTTGACTGGACTCAAGTCCCTACAGTCACTGTAAGC  250

seq1  AATTTAAAATTCTGATGGACCATCCTAAAACACAGACAATGTCTATTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAATTCTGATGGACCATCCTAAAACACAGACAATGTCTATTCAA  300

seq1  G  301
      |
seq2  G  301

seq1: chr3_119445111_119445380
seq2: B6Ng01-160M04.g_73_342

seq1  ATGTTGAAAAAATTATGCAAGCTTCATTTCAAGCTGTATTTACAATCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGAAAAAATTATGCAAGCTTCATTTCAAGCTGTATTTACAATCCCA  50

seq1  AGAAAGAATAGTGATACACAAACCAGTCGTATGGTGGGTGCAGCCAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAATAGTGATACACAAACCAGTCGTATGGTGGGTGCAGCCAGCAG  100

seq1  ACCACAATGAACTCGCTAGAACAAAGGCTACTGTCAGTGAAAGCTAAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAATGAACTCGCTAGAACAAAGGCTACTGTCAGTGAAAGCTAAACA  150

seq1  TTATTTGTAACAAGCAAAGGCTTCTCAAATATTCCTACTTTCAAAAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTAACAAGCAAAGGCTTCTCAAATATTCCTACTTTCAAAAACAG  200

seq1  TTTATGACCCAGGGTGGGGGAATGCTAGGGCAGTGAGGCAGGAGTGTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGACCCAGGGTGGGGGAATGCTAGGGCAGTGAGGCAGGAGTGTGCT  250

seq1  GGGGGGTGGGGGTAGAGGGA  270
      ||||||||||||||||||||
seq2  GGGGGGTGGGGGTAGAGGGA  270