BAC Information

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BAC

Clone NameB6Ng01-160N14
Chromosome3 (Build37)
Map Location 55,273,494 - 55,419,669
singlet/doubletdoublet
Overlap geneDclk1
Upstream geneLOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2
Downstream geneMab21l1, 4933417G07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160N14.bB6Ng01-160N14.g
ACCDH954116DH954117
length966369
definitionDH954116|Mus musculus domesticus DNA, BAC clone: B6Ng01-160N14, 5' end.DH954117|Mus musculus domesticus DNA, BAC clone: B6Ng01-160N14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,273,494 - 55,274,456)(55,419,295 - 55,419,669)
sequence
gaattccaaaagcctcataaaaaaaaagtaatttgtgaatgacaatacat
aaggataatcctaaaagataaatccatatattttacctgttgaactacta
gggtttttttctaatggtggccatatatctatacaggtgtgtgggtgttt
atgtgcatttgcaaggctcagtgtacatgtgggtgtgcctacatcaatat
ctgtgtatgtatatagaacacgaagaataaaggatgatatttgtgatatg
gtcttataagttactggctcccgtagaattaaatataaagctttatgtga
taaagttgtgacatacgtattagttggcacatatttaagctccaaatcag
tttgctgaattagcctgatgaagcagtaccaagtattcacatgtactgat
ctatccaagaccaattgaaatccagacaaacagaaaaaaaaaaaaaaacc
aaccctgaagtcccagcaatccaatcttacattgattgataaatgtaaat
actcattaatgtttttattgtaaattcttgatgctcagtcagtaatctga
tttgaatgcggtgacattttcctgttgtgtgtgtattgatgattatcaat
caatattcacaaaacaaactgatttctagacttgtgggtattggagtgtt
atgctgaaataaaagtagaaaaattcaaagtaaatttgatttgaagtttt
tgttatgaagccagacaacatgtaaggccatgcttgtgtgttctttttta
tgcttataaactgttaaaatgttttgaatacaacttggctgtgtgtgtgt
tatgtgtgtctacatgagtgtatacacaccttgaaattgcttatgggctg
aggttaactgtctgttgtacattacggcatttgtgcctatctgcatcgcc
ttgccagcacctctattgggatgtaagtgacagactgttttggttgatca
acccacagagaaatag
ttatatatgttcagattgggttcaaaaatagatgaaaagcagcattcccg
tcttcagagatgatgcatgaaatgtttaggacttcagagctgaaagattt
ataagcagaattaatatatccttgcatgtgtaaccgcatgcatcaccaaa
acgaaagagggcatctcagtcccgagggtaaataagtggccactgggaga
gttttttctcagggataccatgctctggtagatgaccctacacccatgcc
tgctctaacaccactaagcagaccctatttgggaaaaacaaaacaagaaa
ataggtgaagttgggagagaatagtttgggatgggaacaagggaagtctg
gaagggaggggtgggatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_55273494_55274456
seq2: B6Ng01-160N14.b_40_1005

seq1  GAATTCCAAAAGCCTCATAAAAAAAAAGTAA-TTGTGAATGACAATACAT  49
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAATTCCAAAAGCCTCATAAAAAAAAAGTAATTTGTGAATGACAATACAT  50

seq1  AAGGATAATCCTAAAAGATAAATCCATATATTTTACCTGTTGAACTACTA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATAATCCTAAAAGATAAATCCATATATTTTACCTGTTGAACTACTA  100

seq1  GGGTTTTTTTCTAATGGTGGCCATATATCTATACAGGTGTGTGGGTGTTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTTTTCTAATGGTGGCCATATATCTATACAGGTGTGTGGGTGTTT  150

seq1  ATGTGCATTTGCAAGGCTCAGTGTACATGTGGGTGTGCCTACATCAATAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCATTTGCAAGGCTCAGTGTACATGTGGGTGTGCCTACATCAATAT  200

seq1  CTGTGTATGTATATAGAACACGAAGAATAAAGGATGATATTTGTGATATG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTATGTATATAGAACACGAAGAATAAAGGATGATATTTGTGATATG  250

seq1  GTCTTATAAGTTACTGGCTCCCGTAGAATTAAATATAAAGCTTTATGTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATAAGTTACTGGCTCCCGTAGAATTAAATATAAAGCTTTATGTGA  300

seq1  TAAAGTTGTGACATACGTATTAGTTGGCACATATTTAAGCTCCAAATCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTGTGACATACGTATTAGTTGGCACATATTTAAGCTCCAAATCAG  350

seq1  TTTGCTGAATTAGCCTGATGAAGCAGTACCAAGTATTCACATGTACTGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGAATTAGCCTGATGAAGCAGTACCAAGTATTCACATGTACTGAT  400

seq1  CTATCCAAGACCAATTGAAATCCAGACAAACAGAAAAAAAAAAAAAAACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCAAGACCAATTGAAATCCAGACAAACAGAAAAAAAAAAAAAAACC  450

seq1  AACCCTGAAGTCCCAGCAATCCAATCTTACATTGATTGATAAATGTAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGAAGTCCCAGCAATCCAATCTTACATTGATTGATAAATGTAAAT  500

seq1  ACTCATTAATGTTTTTATTGTAAATTCTTGATGCTCAGTCAGTAATCTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTAATGTTTTTATTGTAAATTCTTGATGCTCAGTCAGTAATCTGA  550

seq1  -TTGAATGCGGTGACATTTTCCTGTTGTGTGTGTATTGATGATTATCAAT  598
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATGCGGTGACATTTTCCTGTTGTGTGTGTATTGATGATTATCAAT  600

seq1  CAATATTCACAAAACAAACTGATTTCTAGACTTGTGGGTACTGGAGTGTT  648
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAATATTCACAAAACAAACTGATTTCTAGACTTGTGGGTATTGGAGTGTT  650

seq1  ATGCTGAAATAAAAGTAGAAAAATTCAAAGTAAATTTGATTTGAAG-TTT  697
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATGCTGAAATAAAAGTAGAAAAATTCAAAGTAAATTTGATTTGAAGTTTT  700

seq1  TGTTATGAAGCCAGACAACATGTAAGGCCATGC-TGTGTGTTC-TTTTTA  745
      ||||||||||||||||||||||||||||||||| ||||||||| ||||||
seq2  TGTTATGAAGCCAGACAACATGTAAGGCCATGCTTGTGTGTTCTTTTTTA  750

seq1  TGCTTATAAACTGTTAAAATGTTTTGAATACAACTT-GCTGTGTGTGTGT  794
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  TGCTTATAAACTGTTAAAATGTTTTGAATACAACTTGGCTGTGTGTGTG-  799

seq1  TTATGTGTGTCTACATGAGTGTATACACA-CTTGAAAATGCTTATTGGCT  843
      ||||||||||||||||||||||||||||| ||||||| ||||||| ||||
seq2  TTATGTGTGTCTACATGAGTGTATACACACCTTGAAATTGCTTATGGGCT  849

seq1  GAAGTTTACTGTCTG-TGTACATTTGTGCATTTGTGCCTATCTGCATTGG  892
      || ||| |||||||| ||||||||   ||||||||||||||||||| | |
seq2  GAGGTTAACTGTCTGTTGTACATTACGGCATTTGTGCCTATCTGCA-TCG  898

seq1  CCTTGCCAGCACCTCTAATTGTGCATGTTAGTGACAGACATGTTTGGTTG  942
      |||||||||||||||| |||| | |||| ||||||||||   ||||||||
seq2  CCTTGCCAGCACCTCT-ATTG-GGATGTAAGTGACAGACTGTTTTGGTTG  946

seq1  AACAAACTCACAGAGAAATAG  963
      | | ||| |||||||||||||
seq2  ATC-AACCCACAGAGAAATAG  966

seq1: chr3_55419295_55419669
seq2: B6Ng01-160N14.g_66_440 (reverse)

seq1  CCATCCCACCCCTCCCTTCCAGACTTCCCTTGTTCCCATCCCAAACTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCACCCCTCCCTTCCAGACTTCCCTTGTTCCCATCCCAAACTATT  50

seq1  CTCTCCCAACTTCACCTATTTTCTTGTTTTGTTTTTCCCAAATAGGGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCAACTTCACCTATTTTCTTGTTTTGTTTTTCCCAAATAGGGTCT  100

seq1  GCTTAGTGGTGTTAGAGCAGGCATGGGTGTAGGGTCATCTACCAGAGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTGGTGTTAGAGCAGGCATGGGTGTAGGGTCATCTACCAGAGCAT  150

seq1  GGTATCCCTGAGAAAAAACTCTCCCAGTGGCCACTTATTTACCCTCGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCCCTGAGAAAAAACTCTCCCAGTGGCCACTTATTTACCCTCGGGA  200

seq1  CTGAGATGCCCTCTTTCGTTTTGGTGATGCATGCGGTTACACATGCAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATGCCCTCTTTCGTTTTGGTGATGCATGCGGTTACACATGCAAGG  250

seq1  ATATATTAATTCTGCTTATAAATCTTTCAGCTCTGAAGTCCTAAACATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTAATTCTGCTTATAAATCTTTCAGCTCTGAAGTCCTAAACATTT  300

seq1  CATGCATCATCTCTGAAGACGGGAATGCTGCTTTTCATCTATTTTTGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCATCATCTCTGAAGACGGGAATGCTGCTTTTCATCTATTTTTGAAC  350

seq1  CCAATCTGAACATATATAAGAATTC  375
      |||||||||||||||||||||||||
seq2  CCAATCTGAACATATATAAGAATTC  375