BAC Information

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BAC

Clone NameB6Ng01-160O08
Chromosome3 (Build37)
Map Location 16,358,195 - 16,497,873
singlet/doubletdoublet
Overlap geneLOC100040034
Upstream geneSirpb1, LOC668101, LOC100038947, LOC622425, LOC664795, LOC381484, Ythdf3
Downstream geneLOC100040059, EG383936, LOC622737
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-160O08.bB6Ng01-160O08.g
ACCDH954152DH954153
length1,0931,016
definitionDH954152|Mus musculus domesticus DNA, BAC clone: B6Ng01-160O08, 5' end.DH954153|Mus musculus domesticus DNA, BAC clone: B6Ng01-160O08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,496,758 - 16,497,873)(16,358,195 - 16,359,220)
sequence
gaattcaggatcttttcagactagcctggagacctgacaagaagccaggg
cctgcattctgaataggtgagaacatcagtgaagaaaatggaagaagggc
atcagaaaatgagaaataaggaaaaaaaaaaaaaaacacagcagtgtaga
aggagaaacagaaagccacagcctagaatatcttcctggttctattgatg
cctttctcctaggctgggctttctgggaactatagcctgaaacaggttaa
tgttctccttgttgcctctacactgcatctctgggcactattcaccatag
tgatgcattaatgaagtggcatgtactgttagaccttatcttcagtcctt
agcacacataatgaaaccactttctttgacccacagcatatttacagccc
ctttctctatgtgtatactcttttcctctttctagcactttcattgttct
ctccccaccacaatgatgtatgtgaggctggttgttaccattgtctcatc
ttcttgtctatattcatcagcatgtaatatcactccactgcacaaatgaa
gcattcattagaaaatatcacacacccctctttcaggcagccaaacctat
ccaatagccatgccttgaaaaatcccttctggagacaagttctcttgttt
gcaaccagcaaaaataatgccttcagaaccttatacagtttccctaaaca
gactttatgctgactttgagagtaaagagatcatttacccttcattggct
atttcttcttagggctccctctcttattaaacaatgagaaaagctgcata
tccttcaagatggatgaacagagaatgaatgtgagtagatcctcctcatg
gactctattctttttccttgtgatttattcagatgtgcatattatttagt
cctgtcctggggaacagcctccactctgatctcatgctgcctctatcttt
ctgtttattgccaagatcctgcagttttctctcttttccttttctttacg
tttttcttattttgatagccaaaagatatctaaatacttttttaaaggtt
attttgagtcatgaaggtgaatccatgctgtgtaatgacccta
gaattcaaaataaatttattttatttttctttggattgcttacttaacta
tgctaaagatgactggtagcagttgtactctggaagtctactatcagcct
tctccttttgttactttagttacagagaatcatttctctgtgccaaatat
cctctgctttattgaaaagtctaagattttaaggtctgaaaatcgagaca
ttgaaaaaccattgaaaggaaaccaactcaaccttagctatattcaggac
tttggctttttaccataattttacagaatccttataaggaatgttttcaa
atttgaggttacttttagcttagttttctaaagtaaatgaaatagaaata
ccaagcttccaacactgccaaggttgataagaatatgaaagcatacatta
aaatgtgtaattatgtttttctttggatgtctttgcagctaataagagat
gaatgtctttgtttattgctgtcttggagaattaatttaatggtattcta
tattgtttgttgaagaacaaagtcaagtctcattattattcaagaagact
tctattgtaggaaatatttaaaaaaccaaaaacctgccaactctccacgc
tgtccatgcttccactcttcctggcttgctaaatctcagtggctagcctc
tgcaacatctggctcagttgtcccacgagccactagttccctctctgcta
taatcccctgtaaccagccgtactacactccagtaaacaaatagatccat
cattctcgtggtttgataacacaatacccagtaaccaggcaaaatcagac
tcttagtgcttaattaaccagccagatttatgtatcataatatcacaatt
tacaagataccattacaataattgcagagccaattgataatgataaaagc
ttatcccactatttctaccttgtgaatcatagatactcgtgatggaaaac
gccatgcgggtacacttttgctgctatggtctcttctctactctagatgc
tcttctcccttccact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_16496758_16497873
seq2: B6Ng01-160O08.b_44_1136 (reverse)

seq1  TAGGGTCATTATCTAACAACATTGGATTTACCTTTCATGACTTCAAAATA  50
      |||||||||||    ||| || |||||| ||| |||||||| ||||||||
seq2  TAGGGTCATTA---CACAGCA-TGGATTCACC-TTCATGAC-TCAAAATA  44

seq1  ACACTTTTTAAAAAAGTATTTTAAGATATCTTTTTGGCTTATTAAAAATA  100
      ||    |||||||||||||||  ||||||| ||||||||   | ||||||
seq2  AC---CTTTAAAAAAGTATTT--AGATATC-TTTTGGCT--ATCAAAATA  86

seq1  AAGAAAAAACGTAAAAGAAAAAGGAAAAGAAGAAGAAAAACTTGCAGGAT  150
      |   |||||||||||   |||||||||||    ||| |||  ||||||||
seq2  A--GAAAAACGTAAA--GAAAAGGAAAAG----AGAGAAAACTGCAGGAT  128

seq1  CTTTGGCAATAAACAGAAAGATAGAGGGCAGCATGAGATCAGAGT-GAGG  199
      | ||||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  C-TTGGCAATAAACAGAAAGATAGA-GGCAGCATGAGATCAGAGTGGAGG  176

seq1  CTGTTCCCCAGGACAGGACTAAATAATATGCACATCTGAATAAATCACAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCCCAGGACAGGACTAAATAATATGCACATCTGAATAAATCACAA  226

seq1  GGAAAAAGAATAGAGGCCATGAGGAGGATCTACTCACATTCATTCTCTGT  299
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGAAAAAGAATAGAGTCCATGAGGAGGATCTACTCACATTCATTCTCTGT  276

seq1  TCATCCATCTTGAAGGATATGCAGCTTTTCTCATTGTTTAATAAGAGAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCATCTTGAAGGATATGCAGCTTTTCTCATTGTTTAATAAGAGAGG  326

seq1  GAGCCCTAAGAAGAAATAGCCAATGAAGGGTAAATGATCTCTTTACTCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTAAGAAGAAATAGCCAATGAAGGGTAAATGATCTCTTTACTCTC  376

seq1  AAAGTCAGCATAAAGTCTGTTTAGGGAAACTGTATAAGGTTCTGAAGGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAGCATAAAGTCTGTTTAGGGAAACTGTATAAGGTTCTGAAGGCA  426

seq1  TTATTTTTGCTGGTTGCAAACAAGAGAACTTGTCTCCAGAAGGGATTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTGCTGGTTGCAAACAAGAGAACTTGTCTCCAGAAGGGATTTTT  476

seq1  CAAGGCATGGCTATTGGATAGGTTTGGCTGCCTGAAAGAGGGGTGTGTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCATGGCTATTGGATAGGTTTGGCTGCCTGAAAGAGGGGTGTGTGA  526

seq1  TATTTTCTAATGAATGCTTCATTTGTGCAGTGGAGTGATATTACATGCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTAATGAATGCTTCATTTGTGCAGTGGAGTGATATTACATGCTG  576

seq1  ATGAATATAGACAAGAAGATGAGACAATGGTAACAACCAGCCTCACATAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATAGACAAGAAGATGAGACAATGGTAACAACCAGCCTCACATAC  626

seq1  ATCATTGTGGTGGGGAGAGAACAATGAAAGTGCTAGAAAGAGGAAAAGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTGTGGTGGGGAGAGAACAATGAAAGTGCTAGAAAGAGGAAAAGAG  676

seq1  TATACACATAGAGAAAGGGGCTGTAAATATGCTGTGGGTCAAAGAAAGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACATAGAGAAAGGGGCTGTAAATATGCTGTGGGTCAAAGAAAGTG  726

seq1  GTTTCATTATGTGTGCTAAGGACTGAAGATAAGGTCTAACAGTACATGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATTATGTGTGCTAAGGACTGAAGATAAGGTCTAACAGTACATGCC  776

seq1  ACTTCATTAATGCATCACTATGGTGAATAGTGCCCAGAGATGCAGTGTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATTAATGCATCACTATGGTGAATAGTGCCCAGAGATGCAGTGTAG  826

seq1  AGGCAACAAGGAGAACATTAACCTGTTTCAGGCTATAGTTCCCAGAAAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACAAGGAGAACATTAACCTGTTTCAGGCTATAGTTCCCAGAAAGC  876

seq1  CCAGCCTAGGAGAAAGGCATCAATAGAACCAGGAAGATATTCTAGGCTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTAGGAGAAAGGCATCAATAGAACCAGGAAGATATTCTAGGCTGT  926

seq1  GGCTTTCTGTTTCTCCTTCTACACTGCTGTGTTTTTTTTTTTTTTTCCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCTGTTTCTCCTTCTACACTGCTGTGTTTTTTTTTTTTTTTCCTT  976

seq1  ATTTCTCATTTTCTGATGCCCTTCTTCCATTTTCTTCACTGATGTTCTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCATTTTCTGATGCCCTTCTTCCATTTTCTTCACTGATGTTCTCA  1026

seq1  CCTATTCAGAATGCAGGCCCTGGCTTCTTGTCAGGTCTCCAGGCTAGTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCAGAATGCAGGCCCTGGCTTCTTGTCAGGTCTCCAGGCTAGTCT  1076

seq1  GAAAAGATCCTGAATTC  1116
      |||||||||||||||||
seq2  GAAAAGATCCTGAATTC  1093

seq1: chr3_16358195_16359220
seq2: B6Ng01-160O08.g_68_1083

seq1  GAATTCAAAATAAATTTATTTTATTTTTCTTTGGATTGCTTACTTAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATAAATTTATTTTATTTTTCTTTGGATTGCTTACTTAACTA  50

seq1  TGCTAAAGATGACTGGTAGCAGTTGTACTCTGGAAGTCTACTATCAGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAGATGACTGGTAGCAGTTGTACTCTGGAAGTCTACTATCAGCCT  100

seq1  TCTCCTTTTGTTACTTTAGTTACAGAGAATCATTTCTCTGTGCCAAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTTGTTACTTTAGTTACAGAGAATCATTTCTCTGTGCCAAATAT  150

seq1  CCTCTGCTTTATTGAAAAGTCTAAGATTTTAAGGTCTGAAAATCGAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTTTATTGAAAAGTCTAAGATTTTAAGGTCTGAAAATCGAGACA  200

seq1  TTGAAAAACCATTGAAAGGAAACCAACTCAACCTTAGCTATATTCAGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAACCATTGAAAGGAAACCAACTCAACCTTAGCTATATTCAGGAC  250

seq1  TTTGGCTTTTTACCATAATTTTACAGAATCCTTATAAGGAATGTTTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTTTTTACCATAATTTTACAGAATCCTTATAAGGAATGTTTTCAA  300

seq1  ATTTGAGGTTACTTTTAGCTTAGTTTTCTAAAGTAAATGAAATAGAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGGTTACTTTTAGCTTAGTTTTCTAAAGTAAATGAAATAGAAATA  350

seq1  CCAAGCTTCCAACACTGCCAAGGTTGATAAGAATATGAAAGCATACATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTTCCAACACTGCCAAGGTTGATAAGAATATGAAAGCATACATTA  400

seq1  AAATGTGTAATTATGTTTTTCTTTGGATGTCTTTGCAGCTAATAAGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTAATTATGTTTTTCTTTGGATGTCTTTGCAGCTAATAAGAGAT  450

seq1  GAATGTCTTTGTTTATTGCTGTCTTGGAGAATTAATTTAATGGTATTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCTTTGTTTATTGCTGTCTTGGAGAATTAATTTAATGGTATTCTA  500

seq1  TATTGTTTGTTGAAGAACAAAGTCAAGTCTCATTATTATTCAAGAAGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTGTTGAAGAACAAAGTCAAGTCTCATTATTATTCAAGAAGACT  550

seq1  TCTATTGTAGGAAATATTTAAAAAACCAAAAACCTGCCAACTCTCCACGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGTAGGAAATATTTAAAAAACCAAAAACCTGCCAACTCTCCACGC  600

seq1  TGTCCATGCTTCCACTCTTCCTGGCTTGCTAAATCTCAGTGGCTAGCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATGCTTCCACTCTTCCTGGCTTGCTAAATCTCAGTGGCTAGCCTC  650

seq1  TGCAACATCTGGCTCAGTTGTCCCACGAGCCACTAGTTCCCTCTCTGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAACATCTGGCTCAGTTGTCCCACGAGCCACTAGTTCCCTCTCTGCTA  700

seq1  TAATCCCCTGTAACCAGCCGTACTACACTCCAGTAAACAAATAGATCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCCTGTAACCAGCCGTACTACACTCCAGTAAACAAATAGATCCAT  750

seq1  CATTCTCGTGGTTTGATAACACAATACCCAGTAACCAGGCAAAATCAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCGTGGTTTGATAACACAATACCCAGTAACCAGGCAAAATCAGAC  800

seq1  TCTTAGTGCTTAATTAACCAGCCAGATTTATGTATCAATAATATCACAAT  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTTAGTGCTTAATTAACCAGCCAGATTTATGTATC-ATAATATCACAAT  849

seq1  TTACAAGATACCATTACAATAATTGCAGAGCCAATTGATAATGATAAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGATACCATTACAATAATTGCAGAGCCAATTGATAATGATAAAAG  899

seq1  CTTAATCCCACTATTTCTAACCTTGTGAAATCATAGATACTCGTGGATGG  950
      ||| |||||||||||||| |||||||| |||||||||||||||| |||||
seq2  CTT-ATCCCACTATTTCT-ACCTTGTG-AATCATAGATACTCGT-GATGG  945

seq1  AAAACGCCATGCGGGTACACTTTTGCTGCTATGGTTCTTCTTCTCCTACT  1000
      |||||||||||||||||||||||||||||||||||   |||||| |||||
seq2  AAAACGCCATGCGGGTACACTTTTGCTGCTATGGT--CTCTTCT-CTACT  992

seq1  CTCAGATGCTCTTTCTCCCTCCCACT  1026
      || |||||||| |||||||| |||||
seq2  CT-AGATGCTC-TTCTCCCTTCCACT  1016