BAC Information

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BAC

Clone NameB6Ng01-161D06
Chromosome3 (Build37)
Map Location 69,099,631 - 69,216,034
singlet/doubletdoublet
Overlap genePpm1l
Upstream geneEG545531, LOC631379, Schip1, Il12a, LOC639530, 1110032F04Rik, Ift80, Smc4, Trim59, LOC667272, Kpna4, Arl14
Downstream geneLOC667309, B3galnt1, Rpl32-ps, Nmd3, LOC100041334, 1110032A04Rik, Gm414, LOC100041384, LOC625868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161D06.bB6Ng01-161D06.g
ACCDH954385DH954386
length1,0201,048
definitionDH954385|Mus musculus domesticus DNA, BAC clone: B6Ng01-161D06, 5' end.DH954386|Mus musculus domesticus DNA, BAC clone: B6Ng01-161D06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,214,992 - 69,216,034)(69,099,631 - 69,100,687)
sequence
gaattctgggtgtttatgctaagcccgtggtcttttgttgtttttattta
ttctttgagaatttcaaacaatgtcttttggtgatatgtgtgctggccat
acactcacagatgtggggccatcctctagagcacagtccacccaccaggg
gccaggccaccaagaaaacggactctcctcccctagcagggctgagctgg
ccgcagctcctcggtcactgctagacgcttcgccccgccatgctggaacg
ttggctgcattagccttgccccgagcttctgctggcagttcataactgtg
gtggtcctgtcggatccagaagacactgtcttgctcagctctccccagcc
tccagctcttataatcttccctccccttcccggatggtctctagatgtcc
tgtttgtggctgagcatgccacggacaccaaatgtctgcattgtgctcat
ttctgacactgtgtttaatatcatctactgcacagagacttttctaatgg
gggttgcaaggcacactaatctatgggcagagagatgtgcctctagtctt
ctatcagcaatggctgaaatccttcactctgctcagggtaaagatgcaac
atgaggaattttaagaaaagtgccttgaggagtgggatggctcacatttc
aggcccacgctgtcagaactcccaagaatggaattagaaaagaagaaagc
atgacctttctgaaacatttccatattttgcctgggaacaaaaggcactt
tcagaatgctatgtagtagtggtggattcagcttctctctctaaagtgcc
agagccttaaatataaaacctggtagcttttctttgctgtttttgactaa
aacaggatagaaaatatgaaataaaatgtcaaatacagttttagacagaa
gcttcacaaaatagtgtttgacagccactgtaaaatgtctgactaatcta
ttgtagagagagggagagaaaaagatgagagaaagacgagagagatgaga
aatgggggaaaaggggggga
gaattcttaatacaaaagaagttttgcacactatgaaagtctgaaacaaa
aaggatataaagtgtgtagggaagaagaacacaggtcccaataagtgttc
tgttttctcaatgtttggtcatagagtgttctcttccacttgacattgtc
accctggacatttctattcttgaccaactagaccatggatgatggacaca
cacgtgcaaagtcttttcttcttgcagagcatttgtctaagtctgaagtg
atgtttgaagctgaattgaacaccgatgtaagaagttttctttccctctg
gggacagagtctcactatgtagccctggctattctggaacttgctacata
gatctagccatgaatattcagagatctgcctgcttttgcctccaagtact
gtgactgaaggcatgtgccaccgtgtctgacaaatgtaagaaagctaaag
ctaatgactcgtgatgccttgattcctgtcagctagtaaaatcaattttc
agatacccagggatgccttcctctttgtcctgtccttttcattgctgcct
gtgactcaaagacacactcatctctctcacctactactcacagctgtaga
cttcgggtggagtcaaagagtgacttcaggttagccacctccattcgttt
gtggacgtgtatttatagtaagccgaggacgtgccaggattctgacttac
actggagaaaagaacaaacacaatcccctgacctcgtggcaagtaaacag
ggagagcgggggaaacagagctggtatggtatgtccacacctgtactcct
agcacttgtggacagaagcctgggctatgtagtcaggccttgtatcaagt
aacataaaacaagccagattcaaccatataaatgccatgtgtacagatat
ggcgggttttcctcctctggtggacactgtgagatgcaagctgtctgaga
gcttcatcagatggttacgaatggtttcatgatcttaggacgcagcagaa
tttcagtgtctctcattttacaatctcacagccgggtttctcctccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_69214992_69216034
seq2: B6Ng01-161D06.b_46_1065 (reverse)

seq1  TCCCCCCCTTTTCCCCCCATTTTCTTCATCTTCTTCCTC-CTTCTTTTTC  49
      |||||||||||| |||||||||   ||||||     ||| | ||||| ||
seq2  TCCCCCCCTTTT-CCCCCATTT--CTCATCT-----CTCTCGTCTTTCTC  42

seq1  TTCTTCATCTTTTTTCTTCTCCCCCTCTTCTTCTACAATAGAATTAGTCA  99
          ||||||||    ||||| ||||||   |||||||||| ||||||||
seq2  ----TCATCTTT----TTCTCTCCCTCT--CTCTACAATAG-ATTAGTCA  81

seq1  GAACATTTTTACAGTTGGCCTGTCAAACACTATTTTGTGAAGCTTCTGTC  149
      | ||| |||||||||  | |||||||||||||||||||||||||||||||
seq2  G-ACA-TTTTACAGT--GGCTGTCAAACACTATTTTGTGAAGCTTCTGTC  127

seq1  TAAAACTGTATTTTGACATTTTATTTCATATTTTCTATCCTGTTTTAGTC  199
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTGTA-TTTGACATTTTATTTCATATTTTCTATCCTGTTTTAGTC  176

seq1  AAAAACAGCAAAGAAAAGCTACCAGGTTTTATATTTAAGGCTCTGGCACT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAGCAAAGAAAAGCTACCAGGTTTTATATTTAAGGCTCTGGCACT  226

seq1  TTAGAGAGAGAAGCTGAATCCACCACTACTACATAGCATTCTGAAAGTGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAGAGAAGCTGAATCCACCACTACTACATAGCATTCTGAAAGTGC  276

seq1  CTTTTGTTCCCAGGCAAAATATGGAAATGTTTCAGAAAGGTCATGCTTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTCCCAGGCAAAATATGGAAATGTTTCAGAAAGGTCATGCTTTC  326

seq1  TTCTTTTCTAATTCCATTCTTGGGAGTTCTGACAGCGTGGGCCTGAAATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCTAATTCCATTCTTGGGAGTTCTGACAGCGTGGGCCTGAAATG  376

seq1  TGAGCCATCCCACTCCTCAAGGCACTTTTCTTAAAATTCCTCATGTTGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCATCCCACTCCTCAAGGCACTTTTCTTAAAATTCCTCATGTTGCA  426

seq1  TCTTTACCCTGAGCAGAGTGAAGGATTTCAGCCATTGCTGATAGAAGACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACCCTGAGCAGAGTGAAGGATTTCAGCCATTGCTGATAGAAGACT  476

seq1  AGAGGCACATCTCTCTGCCCATAGATTAGTGTGCCTTGCAACCCCCATTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCACATCTCTCTGCCCATAGATTAGTGTGCCTTGCAACCCCCATTA  526

seq1  GAAAAGTCTCTGTGCAGTAGATGATATTAAACACAGTGTCAGAAATGAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTCTCTGTGCAGTAGATGATATTAAACACAGTGTCAGAAATGAGC  576

seq1  ACAATGCAGACATTTGGTGTCCGTGGCATGCTCAGCCACAAACAGGACAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGCAGACATTTGGTGTCCGTGGCATGCTCAGCCACAAACAGGACAT  626

seq1  CTAGAGACCATCCGGGAAGGGGAGGGAAGATTATAAGAGCTGGAGGCTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGACCATCCGGGAAGGGGAGGGAAGATTATAAGAGCTGGAGGCTGG  676

seq1  GGAGAGCTGAGCAAGACAGTGTCTTCTGGATCCGACAGGACCACCACAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCTGAGCAAGACAGTGTCTTCTGGATCCGACAGGACCACCACAGT  726

seq1  TATGAACTGCCAGCAGAAGCTCGGGGCAAGGCTAATGCAGCCAACGTTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACTGCCAGCAGAAGCTCGGGGCAAGGCTAATGCAGCCAACGTTCC  776

seq1  AGCATGGCGGGGCGAAGCGTCTAGCAGTGACCGAGGAGCTGCGGCCAGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGCGGGGCGAAGCGTCTAGCAGTGACCGAGGAGCTGCGGCCAGCT  826

seq1  CAGCCCTGCTAGGGGAGGAGAGTCCGTTTTCTTGGTGGCCTGGCCCCTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTGCTAGGGGAGGAGAGTCCGTTTTCTTGGTGGCCTGGCCCCTGG  876

seq1  TGGGTGGACTGTGCTCTAGAGGATGGCCCCACATCTGTGAGTGTATGGCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGACTGTGCTCTAGAGGATGGCCCCACATCTGTGAGTGTATGGCC  926

seq1  AGCACACATATCACCAAAAGACATTGTTTGAAATTCTCAAAGAATAAATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACATATCACCAAAAGACATTGTTTGAAATTCTCAAAGAATAAATA  976

seq1  AAAACAACAAAAGACCACGGGCTTAGCATAAACACCCAGAATTC  1043
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACAAAAGACCACGGGCTTAGCATAAACACCCAGAATTC  1020

seq1: chr3_69099631_69100687
seq2: B6Ng01-161D06.g_68_1115

seq1  GAATTCTTAATACAAAAGAAGTTTTGCACACTATGAAAGTCTGAAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATACAAAAGAAGTTTTGCACACTATGAAAGTCTGAAACAAA  50

seq1  AAGGATATAAAGTGTGTAGGGAAGAAGAACACAGGTCCCAATAAGTGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATATAAAGTGTGTAGGGAAGAAGAACACAGGTCCCAATAAGTGTTC  100

seq1  TGTTTTCTCAATGTTTGGTCATAGAGTGTTCTCTTCCACTTGACATTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTCAATGTTTGGTCATAGAGTGTTCTCTTCCACTTGACATTGTC  150

seq1  ACCCTGGACATTTCTATTCTTGACCAACTAGACCATGGATGATGGACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGACATTTCTATTCTTGACCAACTAGACCATGGATGATGGACACA  200

seq1  CACGTGCAAAGTCTTTTCTTCTTGCAGAGCATTTGTCTAAGTCTGAAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGCAAAGTCTTTTCTTCTTGCAGAGCATTTGTCTAAGTCTGAAGTG  250

seq1  ATGTTTGAAGCTGAATTGAACACCGATGTAAGAAGTTTTCTTTCCCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGAAGCTGAATTGAACACCGATGTAAGAAGTTTTCTTTCCCTCTG  300

seq1  GGGACAGAGTCTCACTATGTAGCCCTGGCTATTCTGGAACTTGCTACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAGAGTCTCACTATGTAGCCCTGGCTATTCTGGAACTTGCTACATA  350

seq1  GATCTAGCCATGAATATTCAGAGATCTGCCTGCTTTTGCCTCCAAGTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAGCCATGAATATTCAGAGATCTGCCTGCTTTTGCCTCCAAGTACT  400

seq1  GTGACTGAAGGCATGTGCCACCGTGTCTGACAAATGTAAGAAAGCTAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGAAGGCATGTGCCACCGTGTCTGACAAATGTAAGAAAGCTAAAG  450

seq1  CTAATGACTCGTGATGCCTTGATTCCTGTCAGCTAGTAAAATCAATTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGACTCGTGATGCCTTGATTCCTGTCAGCTAGTAAAATCAATTTTC  500

seq1  AGATACCCAGGGATGCCTTCCTCTTTGTCCTGTCCTTTTCATTGCTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCCAGGGATGCCTTCCTCTTTGTCCTGTCCTTTTCATTGCTGCCT  550

seq1  GTGACTCAAAGACACACTCATCTCTCTCACCTACTACTCACAGCTGTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTCAAAGACACACTCATCTCTCTCACCTACTACTCACAGCTGTAGA  600

seq1  CTTCGGGTGGAGTCAAAGAGTGACTTCAGGTTAGCCACCTCCATTCGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGGGTGGAGTCAAAGAGTGACTTCAGGTTAGCCACCTCCATTCGTTT  650

seq1  GTGGACGTGTATTTATAGTAAGCCGAGGACGTGCCAGGATTCTGACTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACGTGTATTTATAGTAAGCCGAGGACGTGCCAGGATTCTGACTTAC  700

seq1  ACTGGAGAAAAGAACAAACACAATCCCCTGACCTCGTGGCAAGTAAACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGAAAAGAACAAACACAATCCCCTGACCTCGTGGCAAGTAAACAG  750

seq1  GGAGAGCGGGGGAAACAGAGCTGGTATGGTATGTCCACACCTGTACTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCGGGGGAAACAGAGCTGGTATGGTATGTCCACACCTGTACTCCT  800

seq1  AGCACTTGTGGACAGAAGCCTGGGCTATGTAGTCAGGCCTTGTATCAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTGTGGACAGAAGCCTGGGCTATGTAGTCAGGCCTTGTATCAAGT  850

seq1  AACATAAAACAAGCCAGATTCAACCATATAAATGCCATGTGTAACAGATA  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AACATAAAACAAGCCAGATTCAACCATATAAATGCCATGTGT-ACAGATA  899

seq1  TGGCGGTTTTTCCTCCTCTGGTGGACACTGTGAGATGCAGGCTGTCTGAG  950
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  TGGCGGGTTTTCCTCCTCTGGTGGACACTGTGAGATGCAAGCTGTCTGAG  949

seq1  AGCTTCAATCAAGATGGTTACGGAATGGTTTCATGATCTTAGGACGCAGC  1000
      |||||| ||| |||||||||| ||||||||||||||||||||||||||| 
seq2  AGCTTC-ATC-AGATGGTTAC-GAATGGTTTCATGATCTTAGGACGCAG-  995

seq1  CAGACATTTCCAGGTGTCTCTTCATTTTACAATCTCACAGCCGTGTTTCT  1050
      |||| |||||   ||||||| |||||||||||||||||||||| ||||||
seq2  CAGA-ATTTC--AGTGTCTC-TCATTTTACAATCTCACAGCCGGGTTTCT  1041

seq1  CCTCCAC  1057
      |||||||
seq2  CCTCCAC  1048