BAC Information

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BAC

Clone NameB6Ng01-161F13
Chromosome3 (Build37)
Map Location 103,895,795 - 104,015,229
singlet/doubletdoublet
Overlap geneMagi3
Upstream geneAmpd1, Dennd2c, Bcas2, Trim33, Syt6, Atg4a-ps, LOC100043538, Olfml3, Hipk1, Dclre1b, Ap4b1, Gm566, Ptpn22, LOC668452, Rsbn1, Phtf1
Downstream geneEG433634, LOC668622, Lrig2, Slc16a1, EG624251, 7530404M11Rik, Ppm1j, Rhoc, Mov10, Capza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161F13.bB6Ng01-161F13.g
ACCDH954481DH954482
length1,073992
definitionDH954481|Mus musculus domesticus DNA, BAC clone: B6Ng01-161F13, 5' end.DH954482|Mus musculus domesticus DNA, BAC clone: B6Ng01-161F13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,895,795 - 103,896,859)(104,014,236 - 104,015,229)
sequence
gaattcctgatcttgctacctcttatctcccaagtactaggattataaac
atgttcttttatactttattgtaattgtatttgcttttatttttctcctt
gaaacaggtctacttctagaaccattatgtttgtaaacttatcaaacaag
aacccctgtgctctggtgtgaggaatgaaaacagacaactattcaaaact
acttcatcaagctgagtaaatgtcctctacaagtaaggagagatgaaata
aaatgtaatactcaaatatggcatactgtaagaattaaacgtaatgaatt
cagataaatataggatagtaataacaaggagtaatctaaaagctatagta
atatgtaaagacaatagagaatgaaatgagacaaaaaacagagatcatat
aagtaataaatatgtgcaaaatgtacaataaactttttgtaagaacatat
ataaacgaataagaaagttaaatataagaggtaagctatcggaataaaag
tgagaacaagtgctggcctcggcagcacacagactgaaactgtagccgca
cagagattagcatggccccgtgcaaggatgacgcagaattcatgaagcag
gccagatctttactggacttggggttatttatttattttaatttttactt
ttggggggatgtcacagggtggaggggcacacatagatggactgcgtatg
gtcaggtacatgatgtgaaattcccatagatgttcccataaaaacgttat
atgaaaaaaggtgaaaacaaatttagcttgtccatccctttgagatgtct
tcacttggcaaaaattatattcctatttgtttttctctaaatttgttgtt
ttgtttcctttgttagcatctcagtttattcttaatttaattttcacgac
cttccctactaaaaatacagaatttattaaagcaatagcatttttgatct
tggttcaccacagtattcctgggtctcttacagacctgggctataagtac
gtacttgttcaagttggtggctgaataaataaaacatggatctaatcatt
tttaaatggatgggatgatcatg
gaattctgtttaaaaagaatctcttctgtgctgggtagttttatgtctac
ttgtcaaaagttggagttatttgggaagaggtaacctcaagtaaatgctt
taccagattggcctgtggaaaaaagcctgtgctgtgttttcttgattgat
gattgaatattgatgtaggagggcccagctcatcttgggcagtgccatcc
cgtggctggtggtcctgggcagtataggaaagcaaaccgaacaatcccag
gaggaccaaaccagtaagcagcactccccatcacctcctgctcagttcct
ttgtcagggtcttgacctattgagttcctgccctgacttccctcagtgat
gaactgtaagctgaaataaatccttccctccccaagttgcttggggtttt
atcacagcagtagaaaccctaactaagatacattcttaccgccttggatt
tgcaatacgaatgaatagtaagtgatctacttaaagattctggcatctta
cataactcttcgttattgctatgttttttttgtagagttttaaacacata
attattttccttccagaaagtttgtgaggggctatactaatgaatataaa
aaattgaattttactgtacatgctgatatttaataaagtagatgtaggaa
ttgaaaatataaggtagaaaaacaagtttttattagcaaatatcttattt
ctgaacttaactagaatagctttgtttttttttttttcttttgataaaat
aactttttttgttctttgttatttttcaagacagggcttctctggtgtag
ctctggctgtcctggaaactcactctgtagaacaggctggcctcgaactc
agaaaatcgcttgcctctgcctcccagtggctgggataaaagtgtgcacc
accactgcccagctgataaatacatttaaaactgtgcttgaatgagtagt
ctagaagaattatgccctttagattctattattcaaactaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_103895795_103896859
seq2: B6Ng01-161F13.b_47_1119

seq1  GAATTCCTGATCTTGCTACCTCTTATCTCCCAAGTACTAGGATTATAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATCTTGCTACCTCTTATCTCCCAAGTACTAGGATTATAAAC  50

seq1  ATGTTCTTTTATACTTTATTGTAATTGTATTTGCTTTTATTTTTCTCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTTTATACTTTATTGTAATTGTATTTGCTTTTATTTTTCTCCTT  100

seq1  GAAACAGGTCTACTTCTAGAACCATTATGTTTGTAAACTTATCAAACAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGGTCTACTTCTAGAACCATTATGTTTGTAAACTTATCAAACAAG  150

seq1  AACCCCTGTGCTCTGGTGTGAGGAATGAAAACAGACAACTATTCAAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTGTGCTCTGGTGTGAGGAATGAAAACAGACAACTATTCAAAACT  200

seq1  ACTTCATCAAGCTGAGTAAATGTCCTCTACAAGTAAGGAGAGATGAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATCAAGCTGAGTAAATGTCCTCTACAAGTAAGGAGAGATGAAATA  250

seq1  AAATGTAATACTCAAATATGGCATACTGTAAGAATTAAACGTAATGAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAATACTCAAATATGGCATACTGTAAGAATTAAACGTAATGAATT  300

seq1  CAGATAAATATAGGATAGTAATAACAAGGAGTAATCTAAAAGCTATAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAATATAGGATAGTAATAACAAGGAGTAATCTAAAAGCTATAGTA  350

seq1  ATATGTAAAGACAATAGAGAATGAAATGAGACAAAAAACAGAGATCATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAAAGACAATAGAGAATGAAATGAGACAAAAAACAGAGATCATAT  400

seq1  AAGTAATAAATATGTGCAAAATGTACAATAAACTTTTTGTAAGAACATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATAAATATGTGCAAAATGTACAATAAACTTTTTGTAAGAACATAT  450

seq1  ATAAACGAATAAGAAAGTTAAATATAAGAGGTAAGCTATCGGAATAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACGAATAAGAAAGTTAAATATAAGAGGTAAGCTATCGGAATAAAAG  500

seq1  TGAGAACAAGTGCTGGCCTCGGCAGCACACAGACTGAAACTGTAGCCGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACAAGTGCTGGCCTCGGCAGCACACAGACTGAAACTGTAGCCGCA  550

seq1  CAGAGATTAGCATGGCCCCGTGCAAGGATGACGCAGAATTCATGAAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATTAGCATGGCCCCGTGCAAGGATGACGCAGAATTCATGAAGCAG  600

seq1  GCCAGATCTTTACTGGACTTGGGGTTATTTATTTATTTTAATTTTTACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATCTTTACTGGACTTGGGGTTATTTATTTATTTTAATTTTTACTT  650

seq1  TTGGGGGGATGTCACAGGGTGGAGGGGCACACATAGATGGACTGCGTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGGATGTCACAGGGTGGAGGGGCACACATAGATGGACTGCGTATG  700

seq1  GTCAGGTACATGATGTGAAATTCCCATAGATGTTCCCATAAAAACGTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTACATGATGTGAAATTCCCATAGATGTTCCCATAAAAACGTTAT  750

seq1  ATGAAAAAAGGTGAAAACAAA-TTAGCTTGTCCATCCCTTTGAGATGTCT  799
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATGAAAAAAGGTGAAAACAAATTTAGCTTGTCCATCCCTTTGAGATGTCT  800

seq1  TCACTTGGCAAAAATTATATTCCTA-TTGTTTTTCTCTAAATTTGTTGTT  848
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCACTTGGCAAAAATTATATTCCTATTTGTTTTTCTCTAAATTTGTTGTT  850

seq1  TTGTTTCCTTTG-TAGCATCTCAGTTTATTCTTAATTTAATTTTCACGAC  897
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCTTTGTTAGCATCTCAGTTTATTCTTAATTTAATTTTCACGAC  900

seq1  CTTCCCTACT-AAAATACAGAATTTATTAAAGCAATAGCA-TTTTGATCT  945
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  CTTCCCTACTAAAAATACAGAATTTATTAAAGCAATAGCATTTTTGATCT  950

seq1  T-GTTCACCACAGTATTCCTGGGTCTCTTACAAGACTTGGCATAT-AGTA  993
      | ||||||||||||||||||||||||||||| |||| |||  ||| ||||
seq2  TGGTTCACCACAGTATTCCTGGGTCTCTTAC-AGACCTGGGCTATAAGTA  999

seq1  CGTACTTG-TCAAG-TGGTTGCTGAATAAATAAAACAT-GATCTAATCAA  1040
      |||||||| ||||| |||| |||||||||||||||||| ||||||||| |
seq2  CGTACTTGTTCAAGTTGGTGGCTGAATAAATAAAACATGGATCTAATC-A  1048

seq1  TTTTTAAATGAAT-GGATGATTCATG  1065
      |||||||||| || |||||| |||||
seq2  TTTTTAAATGGATGGGATGA-TCATG  1073

seq1: chr3_104014236_104015229
seq2: B6Ng01-161F13.g_67_1058 (reverse)

seq1  ATTAGTTTGGATAATTAGATCTAAAAGGGCATTATTTCTCTAGGACTACT  50
      ||||||||| |||||   |||| ||||||||| |||  |||| |||||||
seq2  ATTAGTTTGAATAATAGAATCT-AAAGGGCATAATTCTTCTA-GACTACT  48

seq1  CTATTCAAGCACAGTTTTAAATGTTATTTTATCAGCTGGGCAGTGGTGGT  100
      | ||||||||||||||||||||||   |||||||||||||||||||||||
seq2  C-ATTCAAGCACAGTTTTAAATGT--ATTTATCAGCTGGGCAGTGGTGGT  95

seq1  GCACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGA  150
      ||||| |||| ||||||||   ||||||||||||||| |||  |||||||
seq2  GCACA-CTTTTATCCCAGCCACTGGGAGGCAGAGGCAAGCGATTTTCTGA  144

seq1  GTTCGAGGCCAGCCTGGTCTACAGAGTGAG-TTCCAGGACAGCCAGAGCT  199
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  GTTCGAGGCCAGCCTGTTCTACAGAGTGAGTTTCCAGGACAGCCAGAGCT  194

seq1  ACA-CAGAGAAGCCCTGTCTTG-AAAATAACAAAGAAC-AAAAAAGTTAT  246
      ||| |||||||||||||||||| ||||||||||||||| |||||||||||
seq2  ACACCAGAGAAGCCCTGTCTTGAAAAATAACAAAGAACAAAAAAAGTTAT  244

seq1  TTTATCAAAAGAAAAAAAAAAAAACAAAGCTATTCTAGTTAAGTTCAGAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAAAAGAAAAAAAAAAAAACAAAGCTATTCTAGTTAAGTTCAGAA  294

seq1  ATAAGATATTTGCTAATAAAAACTTGTTTTTCTCCCTTATATTTTCAATT  346
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATAAGATATTTGCTAATAAAAACTTGTTTTTCTACCTTATATTTTCAATT  344

seq1  CCTACATCTACTTTATTAAATATCAGCATGTACAGTAAAATTCAATTTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATCTACTTTATTAAATATCAGCATGTACAGTAAAATTCAATTTTT  394

seq1  TATATTCATTAGTATAGCCCCTCACAAACTTTCTGGAAGGAAAATAATTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCATTAGTATAGCCCCTCACAAACTTTCTGGAAGGAAAATAATTA  444

seq1  TGTGTTTAAAACTCTACAAAAAAAACATAGCAATAACGAAGAGTTATGTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTAAAACTCTACAAAAAAAACATAGCAATAACGAAGAGTTATGTA  494

seq1  AGATGCCAGAATCTTTAAGTAGATCACTTACTATTCATTCGTATTGCAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCAGAATCTTTAAGTAGATCACTTACTATTCATTCGTATTGCAAA  544

seq1  TCCAAGGCGGTAAGAATGTATCTTAGTTAGGGTTTCTACTGCTGTGATAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGCGGTAAGAATGTATCTTAGTTAGGGTTTCTACTGCTGTGATAA  594

seq1  AACCCCAAGCAACTTGGGGAGGGAAGGATTTATTTCAGCTTACAGTTCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAAGCAACTTGGGGAGGGAAGGATTTATTTCAGCTTACAGTTCAT  644

seq1  CACTGAGGGAAGTCAGGGCAGGAACTCAATAGGTCAAGACCCTGACAAAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGGGAAGTCAGGGCAGGAACTCAATAGGTCAAGACCCTGACAAAG  694

seq1  GAACTGAGCAGGAGGTGATGGGGAGTGCTGCTTACTGGTTTGGTCCTCCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAGCAGGAGGTGATGGGGAGTGCTGCTTACTGGTTTGGTCCTCCT  744

seq1  GGGATTGTTCGGTTTGCTTTCCTATACTGCCCAGGACCACCAGCCACGGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGTTCGGTTTGCTTTCCTATACTGCCCAGGACCACCAGCCACGGG  794

seq1  ATGGCACTGCCCAAGATGAGCTGGGCCCTCCTACATCAATATTCAATCAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACTGCCCAAGATGAGCTGGGCCCTCCTACATCAATATTCAATCAT  844

seq1  CAATCAAGAAAACACAGCACAGGCTTTTTTCCACAGGCCAATCTGGTAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAAGAAAACACAGCACAGGCTTTTTTCCACAGGCCAATCTGGTAAA  894

seq1  GCATTTACTTGAGGTTACCTCTTCCCAAATAACTCCAACTTTTGACAAGT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTACTTGAGGTTACCTCTTCCCAAATAACTCCAACTTTTGACAAGT  944

seq1  AGACATAAAACTACCCAGCACAGAAGAGATTCTTTTTAAACAGAATTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAAAACTACCCAGCACAGAAGAGATTCTTTTTAAACAGAATTC  992