BAC Information

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BAC

Clone NameB6Ng01-161M17
Chromosome3 (Build37)
Map Location 149,190,991 - 149,364,532
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040354, Lphn2, LOC100040368, LOC668893, EG381483
Downstream geneLOC100040620, LOC100040633, LOC100040455, LOC100040463, LOC623554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161M17.bB6Ng01-161M17.g
ACCDH954809DH954810
length1,0771,103
definitionDH954809|Mus musculus domesticus DNA, BAC clone: B6Ng01-161M17, 5' end.DH954810|Mus musculus domesticus DNA, BAC clone: B6Ng01-161M17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,190,991 - 149,192,087)(149,363,427 - 149,364,532)
sequence
gaattcattctcaatttattgttttgaacaagacccatctatcacaagtc
aacgaatgtgagcatggcctaaggatgcttgtgtaggttatgggaacttt
gagtagagataataaaccggctagcttttaggctgaagagcaagcatatt
tgttttcaacaggtatttagtaatagctagaacttaacaagaggttcaat
tccatgtatcaaatgcagtagtaaatatatttcagtagtttaggctgcat
ttgtaacctatgattgggaagtttctggaaaagagctgaaatcacagatt
agtgataaggtactttctggtgaaatgtctgggccattctagttaatact
gatcagtcatattgcaaagtcttttaagctttgacccgctcctagtgagt
aaagatgactacattgattgcccgtgattatttgaaaatattgacgaata
tctgttctactgaagcctaggtttatagggaggtgttgtgctgtgctact
caattgtagttttgctgacgccctacaacgttatcttaaaggccaccagc
atctctctagtaaaatcatatacgtaatatttgagattagccctataaat
aaattgtgattgtgaacattttagaaagtaaaatacagttttgaaacact
tattttattttcttgaaagttttgttcaaatagctaatatcggaccaaaa
accaaacaacatcttttatttttacttgcctatttctaagtaaactttac
tctgattctttaaataaagaagtaggtacggctcttgtttctaaatctgc
tcagtccaagcaatatttacaattgcaaatgcaagttccacaagattaat
ttcaagccatacataaagataatttagaatatgggcctttctgtctctct
agcttcgattttatatattccagaaccgataaacctacaggactgatggt
tgaggctttaaattcacaacatttaatatgaattcaactcatttatcaaa
aaaatgagttagcatggaaggtaacagattatgactgggctcaccgagct
gccttatccaaatgttggttggaaaaa
gaattctgcgtaccgactgggcatgctatatattgccttcagcttagatc
cattggcagaagtaattaatagctcccatctgtgtgaatagaattataca
gcatgccaaagacacggaggactcagatatttgtgaataatataaatagg
cgttggtatttaactaatcatctacactgatgatcagggcaggctgagat
gaagccagcgtgctggttcagcatatatccagtgatttactgtgtgtcaa
gacctcgtagtgtaaaaagcagacagcaggaaggctttcctgcgtgtaca
actttcacatcttcattaagcgttatttttagtgtaaatcaccaaaatag
taaatgagttagataaaattatttatatgttcacttaaaaattgcctgca
agggtgaataatttgatgtataaccaacactacttttacctgaacttttg
ccataagtgctaaaattaaataaaaaactggcactgaaatactcaaggta
tgaaaatataaacatgtagaatatatatttagcttatggtttttcctttc
tgtattttatgatgcttatcaagattgtcaatgtttgaaattatgaaaaa
taaagtttacaatgttcaatagtgattaaatattttaaaaagaaatattt
taaaattattgcttatatatttctataataataaaagtcaaaagaaatgt
gagaagccatttataaaccaatattgtatggacatttgacaaatgtgtat
tttatttgtgttaaacatgtcagttattataatttgtatagtacttcaaa
ttgaacatcagagcaggttatatcaactttttcatgtgaaacatcaaatt
tataaggtaatttccatctcaatctgcatgatggcaaacacaatctctga
ttggagcagtatgtatcttctagacacaggactcttcttttgatctaaat
gcgagaaaccaccacattagaatgaacacctttaaacttgctgtcatctc
ctccttctgtgatttttaaagagataacttggattcatatatatgaatgg
gtgaaaaaaaatagcattggttctatgacactctcacatatcatggggct
ggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_149190991_149192087
seq2: B6Ng01-161M17.b_46_1122

seq1  GAATTCATTCTCAATTTATTGTTTTGAACAAGACCCATCTATCACAAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTCAATTTATTGTTTTGAACAAGACCCATCTATCACAAGTC  50

seq1  AACGAATGTGAGCATGGCCTAAGGATGCTTGTGTAGGTTATGGGAACTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAATGTGAGCATGGCCTAAGGATGCTTGTGTAGGTTATGGGAACTTT  100

seq1  GAGTAGAGATAATAAACCGGCTAGCTTTTAGGCTGAAGAGCAAGCATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGAGATAATAAACCGGCTAGCTTTTAGGCTGAAGAGCAAGCATATT  150

seq1  TGTTTTCAACAGGTATTTAGTAATAGCTAGAACTTAACAAGAGGTTCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAACAGGTATTTAGTAATAGCTAGAACTTAACAAGAGGTTCAAT  200

seq1  TCCATGTATCAAATGCAGTAGTAAATATATTTCAGTAGTTTAGGCTGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTATCAAATGCAGTAGTAAATATATTTCAGTAGTTTAGGCTGCAT  250

seq1  TTGTAACCTATGATTGGGAAGTTTCTGGAAAAGAGCTGAAATCACAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACCTATGATTGGGAAGTTTCTGGAAAAGAGCTGAAATCACAGATT  300

seq1  AGTGATAAGGTACTTTCTGGTGAAATGTCTGGGCCATTCTAGTTAATACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATAAGGTACTTTCTGGTGAAATGTCTGGGCCATTCTAGTTAATACT  350

seq1  GATCAGTCATATTGCAAAGTCTTTTAAGCTTTGACCCGCTCCTAGTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTCATATTGCAAAGTCTTTTAAGCTTTGACCCGCTCCTAGTGAGT  400

seq1  AAAGATGACTACATTGATTGCCCGTGATTATTTGAAAATATTGACGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATGACTACATTGATTGCCCGTGATTATTTGAAAATATTGACGAATA  450

seq1  TCTGTTCTACTGAAGCCTAGGTTTATAGGGAGGTGTTGTGCTGTGCTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTACTGAAGCCTAGGTTTATAGGGAGGTGTTGTGCTGTGCTACT  500

seq1  CAATTGTAGTTTTGCTGACGCCCTACAACGTTATCTTAAAGGCCACCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTAGTTTTGCTGACGCCCTACAACGTTATCTTAAAGGCCACCAGC  550

seq1  ATCTCTCTAGTAAAATCATATACGTAATATTTGAGATTAGCCCTATAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCTAGTAAAATCATATACGTAATATTTGAGATTAGCCCTATAAAT  600

seq1  AAATTGTGATTGTGAACATTTTAGAAAGTAAAATACAGTTTTGAAACACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTGATTGTGAACATTTTAGAAAGTAAAATACAGTTTTGAAACACT  650

seq1  TATTTTATTTTCTTGAAAGTTTTGTTCAAATAGCTAATATCGGACCAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTTTCTTGAAAGTTTTGTTCAAATAGCTAATATCGGACCAAAA  700

seq1  ACCAAACAACATCTTTTATTTTTACTTGCCTATTTCTAAGTAAACTTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACAACATCTTTTATTTTTACTTGCCTATTTCTAAGTAAACTTTAC  750

seq1  TCTGATTCTTTAAATAAAAGAAGTAGGTACGGCTCTTGTTTCTAAAATCT  800
      ||||||||||||||| ||||||||||||||||||||||||||| ||||||
seq2  TCTGATTCTTTAAAT-AAAGAAGTAGGTACGGCTCTTGTTTCT-AAATCT  798

seq1  GCTCAGTCCAAGCAATATTTACAATTGCAAATGCAAGTTCCACAAGATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTCCAAGCAATATTTACAATTGCAAATGCAAGTTCCACAAGATTA  848

seq1  ATTTCAAGCCATACATAAAGATAATTTAGAATAT-GGCCTTTCTGTCTTC  899
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  ATTTCAAGCCATACATAAAGATAATTTAGAATATGGGCCTTTCTGTC-TC  897

seq1  TCTTAGCTTCGATTTTAATAATATTCCAGAAACCGAATAAACCTACAGGA  949
      || ||||||||||||||   ||||||||| ||||| ||||||||||||||
seq2  TC-TAGCTTCGATTTTA--TATATTCCAG-AACCG-ATAAACCTACAGGA  942

seq1  CTGAATTGGTTGAAGGCTTTTAAATTCAACAACATTTAATATGAATTCAA  999
      ||||  |||||| |||| ||||||||| |||||||||||||||||||| |
seq2  CTGA--TGGTTG-AGGC-TTTAAATTC-ACAACATTTAATATGAATTC-A  986

seq1  ACTCATTTATCAAAAAAAATGAGTTTAGCATTGAGAAGTTAACAAGATTA  1049
      ||||||||||| ||||||||||| |||||||   |||| |||| ||||||
seq2  ACTCATTTATC-AAAAAAATGAG-TTAGCAT--GGAAGGTAAC-AGATTA  1031

seq1  TGACTGGCCTCAACAGGAGCTGCCTTTATCATAATGTTGTTTGAAAAA-  1097
      ||||||| |||| |  |||||||| |||||  ||||||| ||| |||| 
seq2  TGACTGGGCTCACC--GAGCTGCC-TTATCCAAATGTTGGTTGGAAAAA  1077

seq1: chr3_149363427_149364532
seq2: B6Ng01-161M17.g_68_1170 (reverse)

seq1  GCCAGCCCCATGATAATGTGAGA-TGTCATAGAAAACAAAATGCTA-TTT  48
      |||||||||||||| |||||||| ||||||||||     ||||||| |||
seq2  GCCAGCCCCATGAT-ATGTGAGAGTGTCATAGAA---CCAATGCTATTTT  46

seq1  TTCTCACACCATTCATATATATGAATCCAAGTTATCTCCTTTAAAAATCA  98
      || |||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTTCAC-CCATTCATATATATGAATCCAAGTTATCT-CTTTAAAAATCA  94

seq1  CAGAA-GAGGAGATGACAGCAAGTTTAAA-GTGTTCATTCTTATGT-GTG  145
      ||||| ||||||||||||||||||||||| ||||||||||| |||| |||
seq2  CAGAAGGAGGAGATGACAGCAAGTTTAAAGGTGTTCATTCTAATGTGGTG  144

seq1  GTTTCTCTGCATTTAGATC-AAAGAAGAGTCCTGTGTCTAGAAGAATACA  194
      ||||||| ||||||||||| |||||||||||||||||||||||| |||||
seq2  GTTTCTC-GCATTTAGATCAAAAGAAGAGTCCTGTGTCTAGAAG-ATACA  192

seq1  TACTGCTCCAATCAGAGATTGTGTTTGCCATCATGCAGATTTGAGATGGA  244
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TACTGCTCCAATCAGAGATTGTGTTTGCCATCATGCAGA-TTGAGATGGA  241

seq1  AATTACCTTATAAATTTGATGTTTCACATGAAAAAGTTGATATAACCTGC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCTTATAAATTTGATGTTTCACATGAAAAAGTTGATATAACCTGC  291

seq1  TCTGATGTTCAATTTGAAGTACTATACAAATTATAATAACTGACATGTTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGTTCAATTTGAAGTACTATACAAATTATAATAACTGACATGTTT  341

seq1  AACACAAATAAAATACACATTTGTCAAATGTCCATACAATATTGGTTTAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAATAAAATACACATTTGTCAAATGTCCATACAATATTGGTTTAT  391

seq1  AAATGGCTTCTCACATTTCTTTTGACTTTTATTATTATAGAAATATATAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCTTCTCACATTTCTTTTGACTTTTATTATTATAGAAATATATAA  441

seq1  GCAATAATTTTAAAATATTTCTTTTTAAAATATTTAATCACTATTGAACA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAATTTTAAAATATTTCTTTTTAAAATATTTAATCACTATTGAACA  491

seq1  TTGTAAACTTTATTTTTCATAATTTCAAACATTGACAATCTTGATAAGCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAACTTTATTTTTCATAATTTCAAACATTGACAATCTTGATAAGCA  541

seq1  TCATAAAATACAGAAAGGAAAAACCATAAGCTAAATATATATTCTACATG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAAATACAGAAAGGAAAAACCATAAGCTAAATATATATTCTACATG  591

seq1  TTTATATTTTCATACCTTGAGTATTTCAGTGCCAGTTTTTTATTTAATTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTTCATACCTTGAGTATTTCAGTGCCAGTTTTTTATTTAATTT  641

seq1  TAGCACTTATGGCAAAAGTTCAGGTAAAAGTAGTGTTGGTTATACATCAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACTTATGGCAAAAGTTCAGGTAAAAGTAGTGTTGGTTATACATCAA  691

seq1  ATTATTCACCCTTGCAGGCAATTTTTAAGTGAACATATAAATAATTTTAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCACCCTTGCAGGCAATTTTTAAGTGAACATATAAATAATTTTAT  741

seq1  CTAACTCATTTACTATTTTGGTGATTTACACTAAAAATAACGCTTAATGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCATTTACTATTTTGGTGATTTACACTAAAAATAACGCTTAATGA  791

seq1  AGATGTGAAAGTTGTACACGCAGGAAAGCCTTCCTGCTGTCTGCTTTTTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGAAAGTTGTACACGCAGGAAAGCCTTCCTGCTGTCTGCTTTTTA  841

seq1  CACTACGAGGTCTTGACACACAGTAAATCACTGGATATATGCTGAACCAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACGAGGTCTTGACACACAGTAAATCACTGGATATATGCTGAACCAG  891

seq1  CACGCTGGCTTCATCTCAGCCTGCCCTGATCATCAGTGTAGATGATTAGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCTGGCTTCATCTCAGCCTGCCCTGATCATCAGTGTAGATGATTAGT  941

seq1  TAAATACCAACGCCTATTTATATTATTCACAAATATCTGAGTCCTCCGTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACCAACGCCTATTTATATTATTCACAAATATCTGAGTCCTCCGTG  991

seq1  TCTTTGGCATGCTGTATAATTCTATTCACACAGATGGGAGCTATTAATTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGCATGCTGTATAATTCTATTCACACAGATGGGAGCTATTAATTA  1041

seq1  CTTCTGCCAATGGATCTAAGCTGAAGGCAATATATAGCATGCCCAGTCGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCCAATGGATCTAAGCTGAAGGCAATATATAGCATGCCCAGTCGG  1091

seq1  TACGCAGAATTC  1106
      ||||||||||||
seq2  TACGCAGAATTC  1103