BAC Information

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BAC

Clone NameB6Ng01-161P10
Chromosome3 (Build37)
Map Location 145,555,627 - 145,728,657
singlet/doubletdoublet
Overlap geneBcl10, 2410004B18Rik, Syde2, Wdr63
Upstream geneEG622139, AI747448, Clca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik, Cyr61, Ddah1, LOC100040331
Downstream geneMcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-161P10.bB6Ng01-161P10.g
ACCDH954932DH954933
length464938
definitionDH954932|Mus musculus domesticus DNA, BAC clone: B6Ng01-161P10, 5' end.DH954933|Mus musculus domesticus DNA, BAC clone: B6Ng01-161P10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(145,728,184 - 145,728,657)(145,555,627 - 145,556,566)
sequence
caagtagagttgtgttagatcaaaacctggattccaaacttctaggatag
cgttaaagatagcaaacaaaacttcttaaaagaaaaaaaattaaaagaaa
atagccataagaaaaattagttctagctacttagaagtctcctttctctg
ataatagtctctgtgctttgagagttgtgtatatgtattcctggtgagat
gtccatgactagggaggtcagagagagccttggaggagaactactgctgt
tagctgacagagtgttcttttcttaaacagattaacaggatgggatccgt
ctttgagaaccgaagtggaataaattgtcagctcgtcacatgctcagcag
actggtacgtctcacttttttactgcctaagatccatcccaggctgtgtt
gtgggggggggccatgtcccccccccaacatcttccttcactctccaaaa
attattgaacaatt
gaattcaagagaaacttcaaattacacaatgctcagctggcacaggtcgc
tcacagagagccatgcatgccacagcaaagaaggagagcattcctttttt
ttttttttttcttaaaagctgaaacagagcagggacatggtgctttacaa
tgcacagtgacccagccaggcatgtcatcaaagttctggtcacttctacc
tttgctgtacagtctgcagtttgtcattcagtatttaaagttcaggagac
aaagactaagtcagatctatctctcctttgtgatcagtgtttctcataat
gaagacaagagaggctggtctccattgcattccccccagtggatagaagt
gagacaatcagggcatccttcatcactcttctcatatttggcaatctctc
tgaagacatctccatctcttccttgcttctctaactttagactcatagca
catgcaaatatctaactctgtgcaccctgcgaatgaaccatatcctgatc
actgtcatatttcacaacatatcatgagtgaataattatgttttttccag
ggtaaatgaatgtgagccagttgcctaaattaataaagaaaacttgttct
cagcaattatggttgcctttgggggttaaatttgaccatatactagtaaa
aacaatttctccttgagagaggtgaccatctcaaaatccaccacaggaaa
aacagcccactgtatatgtaccagcatgcaactgtcactgacgtcctttc
tctcatcctgttacgtgcagtcagttacgagtgggtagattttccatggc
aacggttttctttttccagagggtggttttccagttcccgtttctttgcg
ctctctttccttgtttggcctgagaaattgactagagttgctgcctcttc
cccatctactctgctctcaaaccccctgtgtgattcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_145728184_145728657
seq2: B6Ng01-161P10.b_46_515 (reverse)

seq1  AATTGCTCAATAATTATTGGAGAGTGAAGGAAGATGTTGGTTTTAGGAAC  50
      ||||| ||||||||| ||||||||||||||||||||||||     || ||
seq2  AATTGTTCAATAATTTTTGGAGAGTGAAGGAAGATGTTGG-GGGGGGGAC  49

seq1  ATGG-AAGCCAGAAGAACACAGCCTGGGATGGATCTTAGGCAGTGTTGGA  99
      ||||    ||   | |||||||||||||||||||||||||||||     |
seq2  ATGGCCCCCCCCCACAACACAGCCTGGGATGGATCTTAGGCAGT-AAAAA  98

seq1  AGTGAGACGTACCAGTCTGCTGAGCATGTGACGAGCTGACAATTTATTCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGACGTACCAGTCTGCTGAGCATGTGACGAGCTGACAATTTATTCC  148

seq1  ACTTCGGTTCTCAAAGACGGATCCCATCCTGTTAATCTGTTTAAGAAAAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCGGTTCTCAAAGACGGATCCCATCCTGTTAATCTGTTTAAGAAAAG  198

seq1  AACACTCTGTCAGCTAACAGCAGTAGTTCTCCTCCAAGGCTCTCTCTGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCTGTCAGCTAACAGCAGTAGTTCTCCTCCAAGGCTCTCTCTGAC  248

seq1  CTCCCTAGTCATGGACATCTCACCAGGAATACATATACACAACTCTCAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTAGTCATGGACATCTCACCAGGAATACATATACACAACTCTCAAA  298

seq1  GCACAGAGACTATTATCAGAGAAAGGTAACTTCTAAGTAGCTAGAACTAA  349
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  GCACAGAGACTATTATCAGAGAAAGGAGACTTCTAAGTAGCTAGAACTAA  348

seq1  TTTTTCTTATGGCTATTTTCTTTTAATTTTTTTTCTTTTAAGAAGTTTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTATGGCTATTTTCTTTTAATTTTTTTTCTTTTAAGAAGTTTTG  398

seq1  TTAAACTATCTTTAACGCTATCCTAGAAGTTTGGAATCCAGGTTTTAAGA  449
      ||   |||||||||||||||||||||||||||||||||||||||||  ||
seq2  TT-TGCTATCTTTAACGCTATCCTAGAAGTTTGGAATCCAGGTTTT--GA  445

seq1  TCTAACACAACTCTACTTGGAATTC  474
      |||||||||||||||||||||||||
seq2  TCTAACACAACTCTACTTGGAATTC  470

seq1: chr3_145555627_145556566
seq2: B6Ng01-161P10.g_70_1007

seq1  GAATTCAAGTGAAACTTCAAATTACACAATGCTCAGCTGGCACAGGTCGC  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGAAACTTCAAATTACACAATGCTCAGCTGGCACAGGTCGC  50

seq1  TCACAGAGAGCCATGCATGCCACAGCAAAGAAGGAGAGCATTCCTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAGAGCCATGCATGCCACAGCAAAGAAGGAGAGCATTCCTTTTTT  100

seq1  TTTTTTTTTTCTTAAAAGCTGAAACAGAGCAGGGACATGGTGCTTTACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTCTTAAAAGCTGAAACAGAGCAGGGACATGGTGCTTTACAA  150

seq1  TGCACAGTGACCCAGCCAGGCATGTCATCAAAGTTCTGGTCACTTCTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGTGACCCAGCCAGGCATGTCATCAAAGTTCTGGTCACTTCTACC  200

seq1  TTTGCTGTACAGTCTGCAGTTTGTCATTCAGTATTTAAAGTTCAGGAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTACAGTCTGCAGTTTGTCATTCAGTATTTAAAGTTCAGGAGAC  250

seq1  AAAGACTAAGTCAGATCTATCTCTCCTTTGTGATCAGTGTTTCTCATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTAAGTCAGATCTATCTCTCCTTTGTGATCAGTGTTTCTCATAAT  300

seq1  GAAGACAAGAGAGGCTGGTCTCCATTGCATTCCCCCCAGTGGATAGAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAAGAGAGGCTGGTCTCCATTGCATTCCCCCCAGTGGATAGAAGT  350

seq1  GAGACAATCAGGGCATCCTTCATCACTCTTCTCATATTTGGCAATCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAATCAGGGCATCCTTCATCACTCTTCTCATATTTGGCAATCTCTC  400

seq1  TGAAGACATCTCCATCTCTTCCTTGCTTCTCTAACTTTAGACTCATAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACATCTCCATCTCTTCCTTGCTTCTCTAACTTTAGACTCATAGCA  450

seq1  CATGCAAATATCTAACTCTGTGCACCCTGCGAATGAACCATATCCTGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAATATCTAACTCTGTGCACCCTGCGAATGAACCATATCCTGATC  500

seq1  ACTGTCATATTTCACAACATATCATGAGTGAATAATTATGTTTTTTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCATATTTCACAACATATCATGAGTGAATAATTATGTTTTTTCCAG  550

seq1  GGTAAATGAATGTGAGCCAGTTGCCTAAATTAATAAAGAAAACTTGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATGAATGTGAGCCAGTTGCCTAAATTAATAAAGAAAACTTGTTCT  600

seq1  CAGCAATTATGGTTGCCTTTGGGGGTTAAATTTGACCATATACTAGTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATTATGGTTGCCTTTGGGGGTTAAATTTGACCATATACTAGTAAA  650

seq1  AACAATTTCTCCTTGAGAGAGGTGACCATCTCAAAATCCACCACAGGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTTCTCCTTGAGAGAGGTGACCATCTCAAAATCCACCACAGGAAA  700

seq1  AACAGCCCACTGTATATGTACCAGCATGCAACTGTCACTGACGTCCTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCCACTGTATATGTACCAGCATGCAACTGTCACTGACGTCCTTTC  750

seq1  TCTCATCCTGTTACGTGCAGTCAGTTACGAGTGAGTAGATTTTCCATGGC  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCTCATCCTGTTACGTGCAGTCAGTTACGAGTGGGTAGATTTTCCATGGC  800

seq1  AACGG-TTTCTTCTACCAGA-GGTGGTTTTCCAGTTCCCGTTTCCTTTGC  848
      ||||| |||||| | ||||| |||||||||||||||||||||| ||||||
seq2  AACGGTTTTCTTTTTCCAGAGGGTGGTTTTCCAGTTCCCGTTT-CTTTGC  849

seq1  GCTCCTCTTTCCTTGTTTGTCCTGAGAAATTGACTAGAGTTGCTGCCTCT  898
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCT-CTCTTTCCTTGTTTGGCCTGAGAAATTGACTAGAGTTGCTGCCTCT  898

seq1  TCCCCATCTTACTCTGCTCTTCAGACCCCCTGTGTGATTCAG  940
      |||||||| |||||||||| ||| ||||||||||||||||||
seq2  TCCCCATC-TACTCTGCTC-TCAAACCCCCTGTGTGATTCAG  938