BAC Information

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BAC

Clone NameB6Ng01-162B16
Chromosome3 (Build37)2 (Build37)
Map Location 41,059,224 - 41,059,73712,612,021 - 12,613,008
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162B16.bB6Ng01-162B16.g
ACCDH955026DH955027
length989989
definitionDH955026|Mus musculus domesticus DNA, BAC clone: B6Ng01-162B16, 5' end.DH955027|Mus musculus domesticus DNA, BAC clone: B6Ng01-162B16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,224 - 41,059,737)(12,612,021 - 12,613,008)
sequence
gaattctttgtttagctctgagccccatttttaatggggttatttgattt
tctggagtccgccttcttgagttctttataaatattggatattagtccct
atctgatttagaatagataaagatcctttcccaatctgttggtagccttt
ttgtcttattgaagggtcttttgccttacagaagctttgcaattttatga
ggtcccatttgtctattctcgattttacagcacaagccattgctgttcta
ttcaggaagtttttcccctgtgcccatatcttcgaggcttttccctactt
tctcctctataagtttcagtgtctctggttttatgtggagttccttaatc
cacttagatttgaccttagtacaaggagataggaatggatcaatttgcat
tcttctacatgataaccaccagttgtgccagcaccatttgttgaaaatgc
tgtcttttttccactggatgattttagctcccttgtcaaagatcaagtga
ccataggtgtgtgggttcatttctgggtcttcaattctattccattggtc
tacttgtctgtcgctataccagtaccatgcagtttttaatcacaattgct
cagtagtacagctttaggtcaggcatggtgattccaccagaggttctttt
attcttgagaggagtttttgctatcctaggatttttgttattccagatga
atttgaagtttgccctttttaattcgttgaattgagttggaattttgatg
aggattgcattgaatctgtagattgcttttggcaagatagccttttttgc
tatattgatcctaccaatccatgagcatgggagatctttccatcttctga
gatcttctttaatttctttcttcagagacttgaagttcttatcatacaga
tctttcacttccttagttagagtcatgccaaggtatttttatattatttg
tgactattgagaaaggcgttgtttccctaatttcttttc
gaattcatgcctctcttctaggttattcaatgttgttgacatataatcat
tctcattgccatgtcttataggcctgctttatttctatggaactatatgt
attttcatctttaaatttattcaataatatgtttgagttttgggtttttg
tattatcttgtggtcatcatctttactgattatctactgtgtttgaatgt
caacaaggcacacaatatcaattctctatcactgtgccaattcatgtgct
aattctggtattctctatcagtgtgttaattcatgtactaatccgctcat
caatagggcacacaaaatcagttcatgtactaatccccatattctcgatg
agcaattcatgtgttaattatgatattctctataagtgtgcttattgtgg
gcacactattggtttttgtcgtgttttttagcttaaacttggtggttatt
ctctattctgaatctttacccagtgactcctgtctcattaccaatcatgt
tcaatgccacacagattaggagacaaatgtttgcctacatgtatatacat
tttgtattttctgcctacttttttctaataatcttacaacatctataagc
ttctctgttttcagtagaaggtaaaatgcaaatttgcaattttgtgtatt
taacctgaggataagaagtaacgttatgtccacttatcagtgagtacata
ttgtgtgagttcttttgtgattgagttacctcactcaggatgatgccctc
caggtccatccatttgcataggaatttcataaattcattctttttaatag
ctgagtagtactccactgtgtaaatgtaccacatattctgtatccattcc
tctgttgagggccatctgggttctttcctagttggccatcactggaaaga
gaggccctttggacttgcaaactttatatgccccagtacaggggattgcc
aggccaaaaagtggggagtggtggctagggggagtggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059224_41059737
seq2: B6Ng01-162B16.b_47_559 (reverse)

seq1  CCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCA  50
      |||||||||||||||||||||||||| |||||||||||||||| ||||||
seq2  CCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCTAAAATCATCCA  50

seq1  GTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTGGT  100

seq1  TATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAG  150
      |||||||||||||||||| |||||||||| ||||||||||||||||||||
seq2  TATCATGTAGAAGAATGCAAATTGATCCATTCCTATCTCCTTGTACTAAG  150

seq1  GTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAA  200
      ||||||||||||||||| ||||||| ||||||||||||||||||||||||
seq2  GTCAAATCTAAGTGGATTAAGGAACTCCACATAAAACCAGAGACACTGAA  200

seq1  ACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGG  250
      |||||||||||||||||| ||||||||||| |||||||||| ||||||||
seq2  ACTTATAGAGGAGAAAGTAGGGAAAAGCCTCGAAGATATGGGCACAGGGG  250

seq1  AAAAA-TTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAAT  299
      ||||| |||||| ||||||||||||||||||||||||||| || ||||||
seq2  AAAAACTTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAAATCGAGAAT  300

seq1  AGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACA  349
      |||||||||||||||||| ||| ||||||||||||| |||||||||||| 
seq2  AGACAAATGGGACCTCATAAAATTGCAAAGCTTCTGTAAGGCAAAAGAC-  349

seq1  CCGTCAATAAGACAAAAAGGC-ACCAACAGATTGGGAAAGGATCTTTACC  398
      || |||||||||||||||||| |||||||||||||||||||||||||| |
seq2  CCTTCAATAAGACAAAAAGGCTACCAACAGATTGGGAAAGGATCTTTATC  399

seq1  TATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAA  448
      ||| |||||||||||| |||||||||||||||||| ||| ||||||||||
seq2  TATTCTAAATCAGATA-GGGACTAATATCCAATATTTATAAAGAACTCAA  448

seq1  GAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAG  498
      ||||| ||| |||||||||||||||||||||||| |||||||||||||||
seq2  GAAGGCGGACTCCAGAAAATCAAATAACCCCATT-AAAAATGGGGCTCAG  497

seq1  AGCTAAACAAAGAATT  514
      ||||||||||||||||
seq2  AGCTAAACAAAGAATT  513

seq1: chr2_12612021_12613008
seq2: B6Ng01-162B16.g_69_1057 (reverse)

seq1  TCCCACT-CCCCTAGCCACCACT-CCCACTTTTTGGCCCTGGCATTCCCC  48
      ||||||| ||||||||||||||| |||||||||||| ||||||| |||||
seq2  TCCCACTCCCCCTAGCCACCACTCCCCACTTTTTGG-CCTGGCAATCCCC  49

seq1  TGTACTGGGGCATATAAAGTTTGCAAGTCCAAAGGGCCTCTCTTTCCAGT  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTGGGGCATATAAAGTTTGCAAGTCCAAAGGGCCTCTCTTTCCAGT  99

seq1  GATGGCCAACTAGGAAAGAACCCAGATGGCCCTCAACAGAGGAATGGATA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCCAACTAGGAAAGAACCCAGATGGCCCTCAACAGAGGAATGGATA  149

seq1  CAGAATATGTGGTACATTTACACAGTGGAGTACTACTCAGCTATTAAAAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATATGTGGTACATTTACACAGTGGAGTACTACTCAGCTATTAAAAA  199

seq1  GAATGAATTTATGAAATTCCTATGCAAATGGATGGACCTGGAGGGCATCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAATTTATGAAATTCCTATGCAAATGGATGGACCTGGAGGGCATCA  249

seq1  TCCTGAGTGAGGTAACTCAATCACAAAAGAACTCACACAATATGTACTCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTGAGGTAACTCAATCACAAAAGAACTCACACAATATGTACTCA  299

seq1  CTGATAAGTGGACATAACGTTACTTCTTATCCTCAGGTTAAATACACAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAGTGGACATAACGTTACTTCTTATCCTCAGGTTAAATACACAAA  349

seq1  ATTGCAAATTTGCATTTTACCTTCTACTGAAAACAGAGAAGCTTATAGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAAATTTGCATTTTACCTTCTACTGAAAACAGAGAAGCTTATAGAT  399

seq1  GTTGTAAGATTATTAGAAAAAAGTAGGCAGAAAATACAAAATGTATATAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAAGATTATTAGAAAAAAGTAGGCAGAAAATACAAAATGTATATAC  449

seq1  ATGTAGGCAAACATTTGTCTCCTAATCTGTGTGGCATTGAACATGATTGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGCAAACATTTGTCTCCTAATCTGTGTGGCATTGAACATGATTGG  499

seq1  TAATGAGACAGGAGTCACTGGGTAAAGATTCAGAATAGAGAATAACCACC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGACAGGAGTCACTGGGTAAAGATTCAGAATAGAGAATAACCACC  549

seq1  AAGTTTAAGCTAAAAAACACGACAAAAACCAATAGTGTGCCCACAATAAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAAGCTAAAAAACACGACAAAAACCAATAGTGTGCCCACAATAAG  599

seq1  CACACTTATAGAGAATATCATAATTAACACATGAATTGCTCATCGAGAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTATAGAGAATATCATAATTAACACATGAATTGCTCATCGAGAAT  649

seq1  ATGGGGATTAGTACATGAACTGATTTTGTGTGCCCTATTGATGAGCGGAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGATTAGTACATGAACTGATTTTGTGTGCCCTATTGATGAGCGGAT  699

seq1  TAGTACATGAATTAACACACTGATAGAGAATACCAGAATTAGCACATGAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACATGAATTAACACACTGATAGAGAATACCAGAATTAGCACATGAA  749

seq1  TTGGCACAGTGATAGAGAATTGATATTGTGTGCCTTGTTGACATTCAAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCACAGTGATAGAGAATTGATATTGTGTGCCTTGTTGACATTCAAAC  799

seq1  ACAGTAGATAATCAGTAAAGATGATGACCACAAGATAATACAAAAACCCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAGATAATCAGTAAAGATGATGACCACAAGATAATACAAAAACCCA  849

seq1  AAACTCAAACATATTATTGAATAAATTTAAAGATGAAAATACATATAGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAAACATATTATTGAATAAATTTAAAGATGAAAATACATATAGTT  899

seq1  CCATAGAAATAAAGCAGGCCTATAAGACATGGCAATGAGAATGATTATAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGAAATAAAGCAGGCCTATAAGACATGGCAATGAGAATGATTATAT  949

seq1  GTCAACAACATTGAATAACCTAGAAGAGAGGCATGAATTC  988
      ||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACAACATTGAATAACCTAGAAGAGAGGCATGAATTC  989