BAC Information

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BAC

Clone NameB6Ng01-162D08
Chromosome3 (Build37)
Map Location 29,580,207 - 29,725,367
singlet/doubletdoublet
Overlap gene6130401L20Rik, LOC100040676
Upstream geneSlc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527
Downstream geneEvi1, Mds1, LOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik, E230002P03Rik, Samd7, Tloc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162D08.bB6Ng01-162D08.g
ACCDH955103DH955104
length1,1751,208
definitionDH955103|Mus musculus domesticus DNA, BAC clone: B6Ng01-162D08, 5' end.DH955104|Mus musculus domesticus DNA, BAC clone: B6Ng01-162D08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,580,207 - 29,581,407)(29,724,150 - 29,725,367)
sequence
gaattctttatctttgtttttgtaaactgttccttctatagatgtgggaa
atttacaatattatactacacatgaattaacaatccaggactcaacaatt
gttcactccccaatatctttctcttttcttacttctgctccctttttccc
tcttactatagaagcctagggcttgaaattgagaaaaaaacaatagataa
atccagtaggtagaaagcttagttagcattcacaaggctgtgacttcaag
tactaacattacacaaaacaagcagaatagagctataatctcagcattta
agaggtagaggaatgaggattagaatgttaaagtcattatgagttctagg
tcaatgttaagtacattaaaacttctctcaatgaacaaaacaaggaagaa
agagagaggggaaagaaagaaatgaatggtaataaagacattaggaaaat
agaagatgaatatgtagctaactacagtagacatcatgtaggggcttgaa
taaaaatggcacccgtagatccttagggcatggaactattaggaagtgtg
gccttgttggagtatgttttgctttattggagaaagtacatcattagagg
gtgggctttgagttctcaaaaactcaagtctgcctagttcatttctcctg
catgtggatcaagatgtagaactctcagctccctctccagaaccatgtct
gcctgcatgcggccataagtcatgatgataatggactaagcctctaaagc
tgtaagccaaccctatttgaaagttatcctttataaaagttgttgtggcc
atgatatctcttcacagcaatggaaaccctaactaagatgcataataaat
atagattgagaataaagcatattgtagaatgtcaactaaaacagctaata
aaattatcatgttaaagaaagtctcaatttcttcagtgtacattctggaa
tacctgacacttctaaaaaataaacaaagcagagaaatctgtcctttaat
aatttcatcaaattatgagaatgtaaaataccatgggagttcccagagca
ctcagccccaggtcccaggagcactctgtcatgttagttaaacatgacat
ctcccctgaatgtcactatttctcagagatgaatgcagtccataaggtgc
ctaagcattcagaaaatatgactgg
gaattcattgaacctaagctgcagatctgaaaacttaactcattcaaagg
aaaccaaaaggtctccatttcctcagagcagccagaatggttctttagtt
tgtttgtttgctgaggatcgcatgaccctccaaggagaacgtgtaagact
caggagactcgttgatttttcagtgttgaaaacaaatgacatgataactg
gacaggcttggatccagagggggcaacaacaaacaaaatcaagaggtact
tcaacagtactgttgaagtttgaaaaatccattaccaagtcgtggaaaga
aaataactcgaggaaatatcatctaaggtcgaccgtttccaatcactggt
actccatccattatatgctcgagtggttccaggaacaacagaagaccata
cactgcttcaatgccaaggacaagaaaggcaacccagcctgtcggcctga
cttcccctcactcaaccccaacacttcaggcttcgcttccctgcccagat
gagttagacatttgagaagagattttgaagccaagggctttgttgtcaaa
caagtccctcagctctcttgtagtctatctgttgcttccataggccttgc
acacaaaaagtatttgagggggacaataaaatgtgtcagccagtccatgt
taaatcttggtgtcttacatctacattttaagaactatggtcagcatcat
gggtgtgcagtagctgattagtagaggtcttgtgtgtgcagtagctcttt
acacaggcctataagtcatgatcattctacatgagagtaagtcaacacac
cctatttttgaatatgttttatgcatacttcacaagtatgatcttatatg
cagtccaaaaatccgtggcttttcacctggcagatttagaatgcttcaca
caatactgtagactagatgatagttctctgtcagactgtagggagaacac
aaaactttgtttgtgacaaccagaaattgataccactgaaagaaccaaag
tctgatgactgagctctcatcatgagaagtgaaaaatgattagcttgtct
aataagatatcttttcataaagaattgatggtaagaggaaaattgattgt
agctggtctgaagtttgacacatcttttaagtaccgatttgacagtgaca
aaattaccaggccacagttatccttggagcattattcttaattccatttt
gacattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_29580207_29581407
seq2: B6Ng01-162D08.b_47_1221

seq1  GAATTCTTTATCTTTGTTTTTGTAAACTGTTCCTTCTATAGATGTGGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATCTTTGTTTTTGTAAACTGTTCCTTCTATAGATGTGGGAA  50

seq1  ATTTACAATATTATACTACACATGAATTAACAATCCAGGACTCAACAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAATATTATACTACACATGAATTAACAATCCAGGACTCAACAATT  100

seq1  GTTCACTCCCCAATATCTTTCTCTTTTCTTACTTCTGCTCCCTTTTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTCCCCAATATCTTTCTCTTTTCTTACTTCTGCTCCCTTTTTCCC  150

seq1  TCTTACTATAGAAGCCTAGGGCTTGAAATTGAGAAAAAAACAATAGATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTATAGAAGCCTAGGGCTTGAAATTGAGAAAAAAACAATAGATAA  200

seq1  ATCCAGTAGGTAGAAAGCTTAGTTAGCATTCACAAGGCTGTGACTTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTAGGTAGAAAGCTTAGTTAGCATTCACAAGGCTGTGACTTCAAG  250

seq1  TACTAACATTACACAAAACAAGCAGAATAGAGCTATAATCTCAGCATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAACATTACACAAAACAAGCAGAATAGAGCTATAATCTCAGCATTTA  300

seq1  AGAGGTAGAGGAATGAGGATTAGAATGTTAAAGTCATTATGAGTTCTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTAGAGGAATGAGGATTAGAATGTTAAAGTCATTATGAGTTCTAGG  350

seq1  TCAATGTTAAGTACATTAAAACTTCTCTCAATGAACAAAACAAGGAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTTAAGTACATTAAAACTTCTCTCAATGAACAAAACAAGGAAGAA  400

seq1  AGAGAGAGGGGAAAGAAAGAAATGAATGGTAATAAAGACATTAGGAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGGGGAAAGAAAGAAATGAATGGTAATAAAGACATTAGGAAAAT  450

seq1  AGAAGATGAATATGTAGCTAACTACAGTAGACATCATGTAGGGGCTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATGAATATGTAGCTAACTACAGTAGACATCATGTAGGGGCTTGAA  500

seq1  TAAAAATGGCACCCGTAGATCCTTAGGGCATGGAACTATTAGGAAGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGGCACCCGTAGATCCTTAGGGCATGGAACTATTAGGAAGTGTG  550

seq1  GCCTTGTTGGAGTATGTTTTGCTTTATTGGAGAAAGTACATCATTAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTTGGAGTATGTTTTGCTTTATTGGAGAAAGTACATCATTAGAGG  600

seq1  GTGGGCTTTGAGTTCTCAAAAACTCAAGTCTGCCTAGTTCATTTCTCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTTTGAGTTCTCAAAAACTCAAGTCTGCCTAGTTCATTTCTCCTG  650

seq1  CATGTGGATCAAGATGTAGAACTCTCAGCTCCCTCTCCAGAACCATGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGATCAAGATGTAGAACTCTCAGCTCCCTCTCCAGAACCATGTCT  700

seq1  GCCTGCATGCGGCCATAAGTCATGATGATAATGGACTAAGCCTCTAAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCATGCGGCCATAAGTCATGATGATAATGGACTAAGCCTCTAAAGC  750

seq1  TGTAAGCCAACCCTATTTGAAAGTTATCCTTTATAAAAGTTGTTGTGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCCAACCCTATTTGAAAGTTATCCTTTATAAAAGTTGTTGTGGCC  800

seq1  ATGATATCTCTTCACAGCAATGGAAACCCTAACTAAGATGCATAATAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATCTCTTCACAGCAATGGAAACCCTAACTAAGATGCATAATAAAT  850

seq1  ATAGATTGAGAATAAAGCATATTGTAGAATGTCAACTAAAACAGCTAATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTGAGAATAAAGCATATTGTAGAATGTCAACTAAAACAGCTAATA  900

seq1  AAATTATCATGTTAAAGAAAGTCTCAATTTCTTCAGTGTACATTTCTGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||   |||
seq2  AAATTATCATGTTAAAGAAAGTCTCAATTTCTTCAGTGTACATTCTGGAA  950

seq1  TACCTGACACTTCTAAAAAAATTAAACAAAGCAGAGAAATCTGTCCTTTA  1000
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  TACCTGACACTTCTAAAAAA--TAAACAAAGCAGAGAAATCTGTCCTTTA  998

seq1  ATTAATTTCATCAAATTATGAGAATGTAAAATACCATGGGAGTTCCCAAG  1050
      | ||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  A-TAATTTCATCAAATTATGAGAATGTAAAATACCATGGGAGTTCCC-AG  1046

seq1  AGCACTCAAGCCCCAAGGTCCCAGGAGCACTCTTGTTCATTGTTAGTTTT  1100
      ||||||| |||||| ||||||||||||||||||   ||| ||||||||  
seq2  AGCACTC-AGCCCC-AGGTCCCAGGAGCACTCT--GTCA-TGTTAGTT--  1089

seq1  AAAACATGACATTTTTCTCTCTGTATTTGTCACTATTTCTCAGAGTAGAA  1150
       ||||||||||| |    | ||| |  ||||||||||||||||||  || 
seq2  -AAACATGACATCT---CCCCTGAA--TGTCACTATTTCTCAGAGATGA-  1132

seq1  TATGCAGTTTCTCATTAAGGGTGCTTATAGTTATTCAGAAAATATGACTG  1200
       |||||||    |||  | ||||| || ||  ||||||||||||||||||
seq2  -ATGCAGT---CCAT--AAGGTGCCTA-AG-CATTCAGAAAATATGACTG  1174

seq1  G  1201
      |
seq2  G  1175

seq1: chr3_29724150_29725367
seq2: B6Ng01-162D08.g_70_1277 (reverse)

seq1  AGAATGTC-AAATGGAATTTAGGAATAATG-TCTCAGTATAACTGTGTGC  48
      |||||||| |||||||| ||| |||||||| ||  || ||||||||| ||
seq2  AGAATGTCAAAATGGAA-TTAAGAATAATGCTCCAAGGATAACTGTG-GC  48

seq1  TTTGTTTATTTTTGTCACTGTCAATATGTGTACTTTAAAAGATTGTGTCA  98
       | |  || ||||||||||||||| ||  |||| |||||||| |||||||
seq2  CTGG--TAATTTTGTCACTGTCAA-ATCGGTAC-TTAAAAGA-TGTGTCA  93

seq1  AACTTCCAGACCAGCTACAATTCAATTTT-CTCTTACCCATCCATTCTTT  147
      ||||| |||||||||||||| |||||||| |||||| ||||| |||| ||
seq2  AACTT-CAGACCAGCTACAA-TCAATTTTCCTCTTA-CCATCAATTC-TT  139

seq1  TATGAAAAGATATC-TATTAGACAAGCTAATTCATTTTTCAC-TCTCATG  195
      |||||||||||||| ||||||||||||||| ||||||||||| |||||||
seq2  TATGAAAAGATATCTTATTAGACAAGCTAA-TCATTTTTCACTTCTCATG  188

seq1  ATGAGATGCTTCAGTCATCAGAACCTTTGGTTCTTTCAGTGGTATCAATT  245
      |||||| || ||||||||||||  |||||||||||||||||||||||| |
seq2  ATGAGA-GC-TCAGTCATCAGA--CTTTGGTTCTTTCAGTGGTATCAA-T  233

seq1  TTCTGGTTGTCACAAAC-AAGTTTTGTGTTCTCCCTACAGTCTGACAGAG  294
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTCTGGTTGTCACAAACAAAGTTTTGTGTTCTCCCTACAGTCTGACAGAG  283

seq1  AACTATCATCTAGTCTACAGTATTGTGTGAAGCATTCTAAATTCTGCCAG  344
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AACTATCATCTAGTCTACAGTATTGTGTGAAGCATTCTAAA-TCTGCCAG  332

seq1  GTGAAAAGCCACGGATTTTTGGACTGCATATAAGATCATACTTGTGAAGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAGCCACGGATTTTTGGACTGCATATAAGATCATACTTGTGAAGT  382

seq1  ATGCATAAAACATATTC-AAAATA-GGTGTGTTGACTTACTCTCATGTAG  442
      ||||||||||||||||| |||||| |||||||||||||||||||||||||
seq2  ATGCATAAAACATATTCAAAAATAGGGTGTGTTGACTTACTCTCATGTAG  432

seq1  AATGATCATGACTTATAGGCCTGTGTAAAGAGCTACTGCACACACAAGAC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCATGACTTATAGGCCTGTGTAAAGAGCTACTGCACACACAAGAC  482

seq1  CTCTACTAATCAGCTACTGCACACCCATGATGCTGACCATAGTTCTTAAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTAATCAGCTACTGCACACCCATGATGCTGACCATAGTTCTTAAA  532

seq1  ATGTAGATGTAAGACACCAAGATTTAACATGGACTGGCTGACACATTTTA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGATGTAAGACACCAAGATTTAACATGGACTGGCTGACACATTTTA  582

seq1  TTGTCCCCCTCAAATACTTTTTGTGTGCAAGGCCTATGGAAGCAACAGAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCCCCTCAAATACTTTTTGTGTGCAAGGCCTATGGAAGCAACAGAT  632

seq1  AGACTACAAGAGAGCTGAGGGACTTGTTTGACAACAAAGCCCTTGGCTTC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACAAGAGAGCTGAGGGACTTGTTTGACAACAAAGCCCTTGGCTTC  682

seq1  AAAATCTCTTCTCAAATGTCTAACTCATCTGGGCAGGGAAGCGAAGCCTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTCTTCTCAAATGTCTAACTCATCTGGGCAGGGAAGCGAAGCCTG  732

seq1  AAGTGTTGGGGTTGAGTGAGGGGAAGTCAGGCCGACAGGCTGGGTTGCCT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTGGGGTTGAGTGAGGGGAAGTCAGGCCGACAGGCTGGGTTGCCT  782

seq1  TTCTTGTCCTTGGCATTGAAGCAGTGTATGGTCTTCTGTTGTTCCTGGAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTCCTTGGCATTGAAGCAGTGTATGGTCTTCTGTTGTTCCTGGAA  832

seq1  CCACTCGAGCATATAATGGATGGAGTACCAGTGATTGGAAACGGTCGACC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCGAGCATATAATGGATGGAGTACCAGTGATTGGAAACGGTCGACC  882

seq1  TTAGATGATATTTCCTCGAGTTATTTTCTTTCCACGACTTGGTAATGGAT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGATATTTCCTCGAGTTATTTTCTTTCCACGACTTGGTAATGGAT  932

seq1  TTTTCAAACTTCAACAGTACTGTTGAAGTACCTCTTGATTTTGTTTGTTG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAACTTCAACAGTACTGTTGAAGTACCTCTTGATTTTGTTTGTTG  982

seq1  TTGCCCCCTCTGGATCCAAGCCTGTCCAGTTATCATGTCATTTGTTTTCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCCTCTGGATCCAAGCCTGTCCAGTTATCATGTCATTTGTTTTCA  1032

seq1  ACACTGAAAAATCAACGAGTCTCCTGAGTCTTACACGTTCTCCTTGGAGG  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAAAAATCAACGAGTCTCCTGAGTCTTACACGTTCTCCTTGGAGG  1082

seq1  GTCATGCGATCCTCAGCAAACAAACAAACTAAAGAACCATTCTGGCTGCT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGCGATCCTCAGCAAACAAACAAACTAAAGAACCATTCTGGCTGCT  1132

seq1  CTGAGGAAATGGAGACCTTTTGGTTTCCTTTGAATGAGTTAAGTTTTCAG  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAAATGGAGACCTTTTGGTTTCCTTTGAATGAGTTAAGTTTTCAG  1182

seq1  ATCTGCAGCTTAGGTTCAATGAATTC  1218
      ||||||||||||||||||||||||||
seq2  ATCTGCAGCTTAGGTTCAATGAATTC  1208