BAC Information

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BAC

Clone NameB6Ng01-162F13
Chromosome3 (Build37)
Map Location 5,622,672 - 5,761,393
singlet/doubletdoublet
Overlap geneEG667759
Upstream geneLOC620283, Zfhx4, Pxmp3, EG620382
Downstream geneLOC100041165, LOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162F13.bB6Ng01-162F13.g
ACCDH955207DH955208
length1,1071,107
definitionDH955207|Mus musculus domesticus DNA, BAC clone: B6Ng01-162F13, 5' end.DH955208|Mus musculus domesticus DNA, BAC clone: B6Ng01-162F13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,760,282 - 5,761,393)(5,622,672 - 5,623,793)
sequence
gaattctgtgtcaatgacctctcaatatatttttgtatttaatatgctta
atctgaacataaatcaaatatatgtgtggtgtgaagcaaaataaatcttc
atgtatatacagttaataaagtttatacgttatctttggaacaaccaaaa
atattgctatcctgaaatatttttataataaaaagaaatatataaatgaa
atattctgtcacatttatttttcttttattattcttttgagtcaataatg
ttattaaatattgtttttatactcttagactctaaaaaagtctgtcaatt
aaagatgactatttgataagtaatttttcctggtgaaattacattaataa
aaaatttattctttggtaattttgacatgacattagaaaaatatttatga
aaaatctttgagaattgtgatcaatatgccatatagttatacttaagcat
actatgccctaacagaaagtaatgatatttattgtttgaaaaatacatgc
atgcatgtgttttgatcaaatccacctccatgccctttcattcagtagtt
cctctattgcccccgtgcactcttctttccagtcttccaaaactgtttgt
ttccttttttatccaccttgctgcctgtatgtgtgttggatcatcttctg
caaaacagtttctcagggaccacaatcctgaatcaaattgactctctccc
ttctgacagactgattggctaagggctttccctagtccacagtggaactg
tgacctgataattcttctcgaagacctcacccatgtagcaatggttggtg
tgagttcactgtacaagggaaacactgctctacctcctattccaataaag
gtctttctaaatatcctagattgaccatgcacttcataatacaatcaaga
ctttgaactttcattctgctagtttagtctctgaaataagtaggattcta
gttctcaaaatgcctggtttttaataatcttaaagaataaagtctctata
aggtatcgacatgcagtgatagttgctttgctgtacattcacattaaaaa
agtagacagacaagaatgaagagacggacaacctacctttctgagtcatc
tcatcaa

gaattccagtcctaggtgcttcattattaactttcctgagtttcaattgc
agcatctttaatgagctgggaacaagtgagtgtttttcaatctttccttg
gcaacatgaacttctttcttcaagtgaaaattcatgtggaaaaataatac
cttttatatgcctataaaaaacagagttgaaatgtctgtactacaatcaa
gcactataggaggcaaattgaaagtcactgaaccaactggtgcctgtcaa
tgctaacatttaggaatccccaaagtagtcatgttttattaatcataata
gcagcatttagacatctaaactcaaaactttattttgcttcatttactta
gctaacagcattaagtgaaaataaagccaaattcattaatccatccaaca
aacaaactaccagtaaatactggagtcagaagtcaaacccaggacaattt
gcctagaacttttaagttgatgctttgaagatttactgtgttcaaggaac
tgctttcctaatgcaatgataaccatatggcttagatgtttctgtttgtt
ttgtgggaaaaaaaaagctaaagtttagattttctgatacatttgagaag
acactttcataagacacatattctatttcttcaacactactaggctaccc
ctcaacaattttgagtttttaaagcttatattctatcattctatcattgc
tattcctcatgtcttaatatgaagtgtgatattttttgtaggttttatta
attgatatttgcatgttgttacaaacaaagcattgtgctgtcccacagca
ctaacatgaaataagaacagagatttcattttaggtacacatactttcct
tcttttataccagagttcaccactagtctaacttcctacacatgatcaca
atagtcaccttttgagtccagaaaaaattcatttaaaatagatcatgctt
atatagttaaaagaaataagagagaccattttatttatcagatatttaac
agttgttcccaattcttatagcatagagatatccatctctatggtctaaa
cattgatattggcatcaaaacatatatacagtcaccaataaaaaaaaatc
taatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_5760282_5761393
seq2: B6Ng01-162F13.b_47_1153 (reverse)

seq1  TTGATGAGATTGACTTCAGAAA-GTAGGTTTGTCTGTCTCTTTCATTCTT  49
      ||||||||| |||| ||||||| ||||| ||||| ||||| |||||||||
seq2  TTGATGAGA-TGAC-TCAGAAAGGTAGG-TTGTCCGTCTC-TTCATTCTT  46

seq1  GTCTGTCTACTTTTTTAATGTGATTGTACAGCAAAGCAACTATCACTGCA  99
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTCTGTCTACTTTTTTAATGTGAATGTACAGCAAAGCAACTATCACTGCA  96

seq1  TGTCGATACCTTATAGAGACTTTATTCTTTAAGATTATTAAAAAACCAGG  149
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGTCGATACCTTATAGAGACTTTATTCTTTAAGATTATT-AAAAACCAGG  145

seq1  CATTTTTGAGAACTAGAATCCTACTTATTTCAGAGACTAAAACTAGCAGA  199
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CA-TTTTGAGAACTAGAATCCTACTTATTTCAGAGACT-AAACTAGCAGA  193

seq1  ATGAAAGTTCAAAGTCTTGATTGTATTATGAAGTGCATGGTCAATCTAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGTTCAAAGTCTTGATTGTATTATGAAGTGCATGGTCAATCTAGG  243

seq1  ATATTTAGAAAGACC-TTATTGGAATAGGAGGTAGAGCAGTGTTTCCCTT  298
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATATTTAGAAAGACCTTTATTGGAATAGGAGGTAGAGCAGTGTTTCCCTT  293

seq1  GTACAGTGAACTCACACCAACCATTGCTACATGGGTGAGGTCTTCGAGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTGAACTCACACCAACCATTGCTACATGGGTGAGGTCTTCGAGAA  343

seq1  GAATTATCAGGTCACAGTTCCACTGTGGACTAGGGAAAGCCCTTAGCCAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATCAGGTCACAGTTCCACTGTGGACTAGGGAAAGCCCTTAGCCAA  393

seq1  TCAGTCTGTCAGAAGGGAGAGAGTCAATTTGATTCAGGATTGTGGTCCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTGTCAGAAGGGAGAGAGTCAATTTGATTCAGGATTGTGGTCCCT  443

seq1  GAGAAACTGTTTTGCAGAAGATGATCCAACACACATACAGGCAGCAAGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACTGTTTTGCAGAAGATGATCCAACACACATACAGGCAGCAAGGT  493

seq1  GGATAAAAAAGGAAACAAACAGTTTTGGAAGACTGGAAAGAAGAGTGCAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAAAAAGGAAACAAACAGTTTTGGAAGACTGGAAAGAAGAGTGCAC  543

seq1  GGGGGCAATAGAGGAACTACTGAATGAAAGGGCATGGAGGTGGATTTGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCAATAGAGGAACTACTGAATGAAAGGGCATGGAGGTGGATTTGAT  593

seq1  CAAAACACATGCATGCATGTATTTTTCAAACAATAAATATCATTACTTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACACATGCATGCATGTATTTTTCAAACAATAAATATCATTACTTTC  643

seq1  TGTTAGGGCATAGTATGCTTAAGTATAACTATATGGCATATTGATCACAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGGCATAGTATGCTTAAGTATAACTATATGGCATATTGATCACAA  693

seq1  TTCTCAAAGATTTTTCATAAATATTTTTCTAATGTCATGTCAAAATTACC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAAGATTTTTCATAAATATTTTTCTAATGTCATGTCAAAATTACC  743

seq1  AAAGAATAAATTTTTTATTAATGTAATTTCACCAGGAAAAATTACTTATC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATAAATTTTTTATTAATGTAATTTCACCAGGAAAAATTACTTATC  793

seq1  AAATAGTCATCTTTAATTGACAGACTTTTTTAGAGTCTAAGAGTATAAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTCATCTTTAATTGACAGACTTTTTTAGAGTCTAAGAGTATAAAA  843

seq1  ACAATATTTAATAACATTATTGACTCAAAAGAATAATAAAAGAAAAATAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATTTAATAACATTATTGACTCAAAAGAATAATAAAAGAAAAATAA  893

seq1  ATGTGACAGAATATTTCATTTATATATTTCTTTTTATTATAAAAATATTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACAGAATATTTCATTTATATATTTCTTTTTATTATAAAAATATTT  943

seq1  CAGGATAGCAATATTTTTGGTTGTTCCAAAGATAACGTATAAACTTTATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATAGCAATATTTTTGGTTGTTCCAAAGATAACGTATAAACTTTATT  993

seq1  AACTGTATATACATGAAGATTTATTTTGCTTCACACCACACATATATTTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTATATACATGAAGATTTATTTTGCTTCACACCACACATATATTTG  1043

seq1  ATTTATGTTCAGATTAAGCATATTAAATACAAAAATATATTGAGAGGTCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTTCAGATTAAGCATATTAAATACAAAAATATATTGAGAGGTCA  1093

seq1  TTGACACAGAATTC  1112
      ||||||||||||||
seq2  TTGACACAGAATTC  1107


seq1: chr3_5622672_5623793
seq2: B6Ng01-162F13.g_68_1174

seq1  GAATTCCAGTCCTAGGTGCTTCATTATTAACTTTCCTGAGTTTCAATTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTCCTAGGTGCTTCATTATTAACTTTCCTGAGTTTCAATTGC  50

seq1  AGCATCTTTAATGAGCTGGGAACAAGTGAGTGTTTTTCAATCTTTCCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTTTAATGAGCTGGGAACAAGTGAGTGTTTTTCAATCTTTCCTTG  100

seq1  GCAACATGAACTTCTTTCTTCAAGTGAAAATTCATGTGGAAAAATAATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATGAACTTCTTTCTTCAAGTGAAAATTCATGTGGAAAAATAATAC  150

seq1  CTTTTATATGCCTATAAAAAACAGAGTTGAAATGTCTGTACTACAATCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATATGCCTATAAAAAACAGAGTTGAAATGTCTGTACTACAATCAA  200

seq1  GCACTATAGGAGGCAAATTGAAAGTCACTGAACCAACTGGTGCCTGTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTATAGGAGGCAAATTGAAAGTCACTGAACCAACTGGTGCCTGTCAA  250

seq1  TGCTAACATTTAGGAATCCCCAAAGTAGTCATGTTTTATTAATCATAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAACATTTAGGAATCCCCAAAGTAGTCATGTTTTATTAATCATAATA  300

seq1  GCAGCATTTAGACATCTAAACTCAAAACTTTATTTTGCTTCATTTACTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATTTAGACATCTAAACTCAAAACTTTATTTTGCTTCATTTACTTA  350

seq1  GCTAACAGCATTAAGTGAAAATAAAGCCAAATTCATTAATCCATCCAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACAGCATTAAGTGAAAATAAAGCCAAATTCATTAATCCATCCAACA  400

seq1  AACAAACTACCAGTAAATACTGGAGTCAGAAGTCAAACCCAGGACAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACTACCAGTAAATACTGGAGTCAGAAGTCAAACCCAGGACAATTT  450

seq1  GCCTAGAACTTTTAAGTTGATGCTTTGAAGATTTACTGTGTTCAAGGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGAACTTTTAAGTTGATGCTTTGAAGATTTACTGTGTTCAAGGAAC  500

seq1  TGCTTTCCTAATGCAATGATAACCATATGGCTTAGATGTTTCTGTTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCCTAATGCAATGATAACCATATGGCTTAGATGTTTCTGTTTGTT  550

seq1  TTGTGGGAAAAAAAAAGCTAAAGTTTAGATTTTCTGATACATTTGAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGAAAAAAAAAGCTAAAGTTTAGATTTTCTGATACATTTGAGAAG  600

seq1  ACACTTTCATAAGACACATATTCTATTTCTTCAACACTACTAGGCTACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTCATAAGACACATATTCTATTTCTTCAACACTACTAGGCTACCC  650

seq1  CTCAACAATTTTGAGTTTTTAAAGCTTATATTCTATCATTCTATCATTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACAATTTTGAGTTTTTAAAGCTTATATTCTATCATTCTATCATTGC  700

seq1  TATTCCTCATGTCTTAATATGAAGTGTGATA-TTTTTGTAGGTTTTATTA  749
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TATTCCTCATGTCTTAATATGAAGTGTGATATTTTTTGTAGGTTTTATTA  750

seq1  ATTGATATTTGCATGTTGTTACAAACAAAGCATTGTGCTGTCCCACAGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATATTTGCATGTTGTTACAAACAAAGCATTGTGCTGTCCCACAGCA  800

seq1  CTAACATGAAATAAGAACAGAGATTTCATTTTAGGTACACATACTTTCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATGAAATAAGAACAGAGATTTCATTTTAGGTACACATACTTTCCT  850

seq1  TCTTTTATACCAGAGTTCACCACTAGTCTAACTTCCTACACATGATCACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATACCAGAGTTCACCACTAGTCTAACTTCCTACACATGATCACA  900

seq1  ATAGTCACCTTTTGAGTCCAGAAAAAAATTCATTTAAAATAGATCATGCT  949
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATAGTCACCTTTTGAGTCCAG-AAAAAATTCATTTAAAATAGATCATGCT  949

seq1  TATATAGTAAAAGGAAATAAGAGAGACCATTTTAATTTATCAGATATTTA  999
      |||||||| ||| |||||||||||||||||||| ||||||||||||||||
seq2  TATATAGTTAAAAGAAATAAGAGAGACCATTTT-ATTTATCAGATATTTA  998

seq1  ACAGTTGTTCCCAATTCTTTATAAGCATTAAGAGAATAATCCCATCTTCT  1049
      ||||||||||||||||| |||| |||||  |||| |||   ||||| |||
seq2  ACAGTTGTTCCCAATTC-TTAT-AGCAT--AGAG-ATA--TCCATC-TCT  1040

seq1  ATGGTCTAAACATTGAATATTGGCATCAAAACATATATACAGTCACCCAA  1099
      ||||||||||||||| |||||||||||||||||||||||||||||||  |
seq2  ATGGTCTAAACATTG-ATATTGGCATCAAAACATATATACAGTCACC--A  1087

seq1  ATAAAAAAAAAAATCTAAATCTT  1122
      ||  |||||||||||| ||||||
seq2  AT--AAAAAAAAATCT-AATCTT  1107


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