BAC Information

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BAC

Clone NameB6Ng01-162H03
Chromosome3 (Build37)
Map Location 69,055,394 - 69,155,546
singlet/doubletdoublet
Overlap genePpm1l
Upstream geneEG545531, LOC631379, Schip1, Il12a, LOC639530, 1110032F04Rik, Ift80, Smc4, Trim59, LOC667272, Kpna4, Arl14
Downstream geneLOC667309, B3galnt1, Rpl32-ps, Nmd3, LOC100041334, 1110032A04Rik, Gm414
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162H03.bB6Ng01-162H03.g
ACCDH955282DH955283
length5081,177
definitionDH955282|Mus musculus domesticus DNA, BAC clone: B6Ng01-162H03, 5' end.DH955283|Mus musculus domesticus DNA, BAC clone: B6Ng01-162H03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,055,394 - 69,055,907)(69,154,349 - 69,155,546)
sequence
ttcagcagtgtgtttgtcagtcagttcaaaactatttgattagttggtgc
tgatatattctccttggaaagatttctcaccttttagttttagctcaagg
tttgggtttgtgcgttcgtgtgtgtgtgtgtgtgtgtgtgtgtgttgcta
aagagaaataaacttttagatagtgttcatttaagaaaaataacaaggta
atttgaagtggtggggaaaagagaaaaagataaagtagtggtgatgataa
ttttctttaggaaagcaatccggagtcagatcactggacagcaatgagca
cacttttagcatcgtggacaaactgtcgagtctccactgatcacctctca
ccccgtaggaaaaccaatccctggaggaggaaaccggaagtggcatcaga
agcacctcctcctgcggccattccaccactcttgcccctctccccacaca
cttccttttcagagacatgtgacccacgtcctgttgggggctcatttgta
tgtgacaa
gaattcaccaggacaactaggcttgctgaccaatgggtcccacgaatcca
cctgtctccacctctccagtgatgggcttaaaagcacactccaccacata
gagctttttgtgaatgggttctgggaatctcacgcaggccttcatgcttg
caaagctttttactgagctatctccctctcccctcgttcttaagacttct
tcagcactaaattaagccaagggaacactgccccataatcaggggaagaa
cctaagacaggttagaagagcatcttaggcaagcgctttaaagatgtatt
acagcccacccagctagcacagtgtaacttatcgcaaatgctcaattaaa
aaacactagggaccagtgagctcagctaataaggggacttgcctccaaac
ctggaaaatctgagttccatcctcagaatccccatggtagaaggagaaag
agcaatgcccgcaagttgtctcgtgacctcttccatacaccaaatagggt
gtgagccatgtatacacacacacacacacacacacacattcgccccagag
taaatagatgtaacttattttttaaaactccagctgtttagatgctgaat
gctattctgttcaaataagagtaattttaaataaaaacgaaaatgacata
cacttgggaagagtaagtttcccatgccagccagctgataatcagctgtg
aaatatatattgatactatattaggctagtaaggaaatttacctaataga
taaataaataaacaaacctgccgtgcattttcaagttttccattgagaag
gtactaaggactttgacaatcagctgaaggtcacagagaagtgatacaga
tagagcccaggttggtgttcccaatccaccacccaacagtgacctacagg
caggaatgttacgatgcaattaaaagctctccaaaattaaaactgcctaa
aggaaaaggatcagaagaaactgtatttcatatataacactaaagaccaa
agtggtcacctataaaccatatcatctgagctactaaatactatttttaa
attccatacgtgcatcttcttctgaacctcagggaaatggttggatgagc
aaatatatcacctcatagtaacctgggcaaggtccaacgttcctggatac
cagcaagccaagtctatctagacactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_69055394_69055907
seq2: B6Ng01-162H03.b_49_562

seq1  GAATTCTTCAGCAGTGTGTTTGTCAGTCAGTTCAAAACTATTTGATTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGCAGTGTGTTTGTCAGTCAGTTCAAAACTATTTGATTAGT  50

seq1  TGGTGCTGATATATTCTCCTTGGAAAGATTTCTCACCTTTTAGTTTTAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTGATATATTCTCCTTGGAAAGATTTCTCACCTTTTAGTTTTAGC  100

seq1  TCAAGGTTTGGGTTTGTGCGTTCGTGTGTGTGTGTGTGTGTGTGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTTTGGGTTTGTGCGTTCGTGTGTGTGTGTGTGTGTGTGTGTGTG  150

seq1  TTGCTAAAGAGAAATAAACTTTTAGATAGTGTTCATTTAAGAAAAATAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAAAGAGAAATAAACTTTTAGATAGTGTTCATTTAAGAAAAATAAC  200

seq1  AAGGTAATTTGAAGTGGTGGGGAAAAGAGAAAAAGATAAAGTAGTGGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAATTTGAAGTGGTGGGGAAAAGAGAAAAAGATAAAGTAGTGGTGA  250

seq1  TGATAATTTTCTTTAGGAAAGCAATCCGGAGTCAGATCACTGGACAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATTTTCTTTAGGAAAGCAATCCGGAGTCAGATCACTGGACAGCAA  300

seq1  TGAGCACACTTTTAGCATCGTGGACAAACTGTCGAGTCTCCACTGATCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACACTTTTAGCATCGTGGACAAACTGTCGAGTCTCCACTGATCAC  350

seq1  CTCTCACCCCGTAGGAAAACCAATCCCTGGAGGAGGAAACCGGAAGTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACCCCGTAGGAAAACCAATCCCTGGAGGAGGAAACCGGAAGTGGC  400

seq1  ATCAGAAGCACCTCCTCCAGCGGCCATTCCACCACTCTTGCCCCTCTCCC  450
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATCAGAAGCACCTCCTCCTGCGGCCATTCCACCACTCTTGCCCCTCTCCC  450

seq1  CACACACTTCCTTTTCAGAGACATGTGACCCACGTCCTGTTGGTGGCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CACACACTTCCTTTTCAGAGACATGTGACCCACGTCCTGTTGGGGGCTCA  500

seq1  ATTGTATGTGACAA  514
       |||||||||||||
seq2  TTTGTATGTGACAA  514

seq1: chr3_69154349_69155546
seq2: B6Ng01-162H03.g_68_1244 (reverse)

seq1  CAGTGTCTAGATAGCACTTGGCTTGCCCTTGGTACTCAGGAAACCCCTGG  50
      |||||||||||||| |||||||||||   |||||  ||||||  |  |||
seq2  CAGTGTCTAGATAG-ACTTGGCTTGC---TGGTATCCAGGAA--CGTTGG  44

seq1  TACCTGGCCAGGTACATTAATGA-GTGAAATTATTTGCTCATCACAACAC  99
        | || ||||||   |  |||| |||| | |||||||||||| |||| |
seq2  ACCTTGCCCAGGTTACT--ATGAGGTGATA-TATTTGCTCATC-CAAC-C  89

seq1  ATTTTCCTTGAGGTTTTCAAGAAGAAGATGCACGTATGGATTTTAAAAAT  149
      | ||||| |||||||    ||||||||||||||||||||| |||||||||
seq2  A-TTTCCCTGAGGTT---CAGAAGAAGATGCACGTATGGAATTTAAAAAT  135

seq1  AGTTATTTAAGTAGCCTCAGATGATATTGGTTTATAGGTGACCACTTTGG  199
      || ||||| ||||| ||||||||||| |||||||||||||||||||||||
seq2  AG-TATTT-AGTAG-CTCAGATGATA-TGGTTTATAGGTGACCACTTTGG  181

seq1  TCTTTAGTGTTATATATGAAAATACAGTTTCTTCTGATCCTTTTTCCTTT  249
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  TCTTTAGTGTTATATATG-AAATACAGTTTCTTCTGATCC-TTTTCCTTT  229

seq1  AGGCAGTTTTAATTTTGGAGAGCTTTTAATTGCATCGTTAACATTCCTGC  299
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGGCAGTTTTAATTTTGGAGAGCTTTTAATTGCATCG-TAACATTCCTGC  278

seq1  CTGTAGGTCACTGTTGGGTGGTGGATTGGGAACACCAACCTGGGCTCTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGTCACTGTTGGGTGGTGGATTGGGAACACCAACCTGGGCTCTAT  328

seq1  CTGTATCACTTCTCTGTGACCTTCAGCTGATTGTCAAAGTCCTTAGTACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCACTTCTCTGTGACCTTCAGCTGATTGTCAAAGTCCTTAGTACC  378

seq1  TTCTCAATGGAAAACTTGAAAATGCACGGCAGGTTTGTTTATTTATTTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAATGGAAAACTTGAAAATGCACGGCAGGTTTGTTTATTTATTTAT  428

seq1  CTATTAGGTAAATTTCCTTACTAGCCTAATATAGTATCAATATATATTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGGTAAATTTCCTTACTAGCCTAATATAGTATCAATATATATTTC  478

seq1  ACAGCTGATTATCAGCTGGCTGGCATGGGAAACTTACTCTTCCCAAGTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTGATTATCAGCTGGCTGGCATGGGAAACTTACTCTTCCCAAGTGT  528

seq1  ATGTCATTTTCGTTTTTATTTAAAATTACTCTTATTTGAACAGAATAGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATTTTCGTTTTTATTTAAAATTACTCTTATTTGAACAGAATAGCA  578

seq1  TTCAGCATCTAAACAGCTGGAGTTTTAAAAAATAAGTTACATCTATTTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCATCTAAACAGCTGGAGTTTTAAAAAATAAGTTACATCTATTTAC  628

seq1  TCTGGGGCGAATGTGTGTGTGTGTGTGTGTGTGTGTATACATGGCTCACA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGCGAATGTGTGTGTGTGTGTGTGTGTGTGTATACATGGCTCACA  678

seq1  CCCTATTTGGTGTATGGAAGAGGTCACGAGACAACTTGCGGGCATTGCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTTGGTGTATGGAAGAGGTCACGAGACAACTTGCGGGCATTGCTC  728

seq1  TTTCTCCTTCTACCATGGGGATTCTGAGGATGGAACTCAGATTTTCCAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTTCTACCATGGGGATTCTGAGGATGGAACTCAGATTTTCCAGG  778

seq1  TTTGGAGGCAAGTCCCCTTATTAGCTGAGCTCACTGGTCCCTAGTGTTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGGCAAGTCCCCTTATTAGCTGAGCTCACTGGTCCCTAGTGTTTT  828

seq1  TTAATTGAGCATTTGCGATAAGTTACACTGTGCTAGCTGGGTGGGCTGTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTGAGCATTTGCGATAAGTTACACTGTGCTAGCTGGGTGGGCTGTA  878

seq1  ATACATCTTTAAAGCGCTTGCCTAAGATGCTCTTCTAACCTGTCTTAGGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCTTTAAAGCGCTTGCCTAAGATGCTCTTCTAACCTGTCTTAGGT  928

seq1  TCTTCCCCTGATTATGGGGCAGTGTTCCCTTGGCTTAATTTAGTGCTGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCCTGATTATGGGGCAGTGTTCCCTTGGCTTAATTTAGTGCTGAA  978

seq1  GAAGTCTTAAGAACGAGGGGAGAGGGAGATAGCTCAGTAAAAAGCTTTGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTTAAGAACGAGGGGAGAGGGAGATAGCTCAGTAAAAAGCTTTGC  1028

seq1  AAGCATGAAGGCCTGCGTGAGATTCCCAGAACCCATTCACAAAAAGCTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGAAGGCCTGCGTGAGATTCCCAGAACCCATTCACAAAAAGCTCT  1078

seq1  ATGTGGTGGAGTGTGCTTTTAAGCCCATCACTGGAGAGGTGGAGACAGGT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTGGAGTGTGCTTTTAAGCCCATCACTGGAGAGGTGGAGACAGGT  1128

seq1  GGATTCGTGGGACCCATTGGTCAGCAAGCCTAGTTGTCCTGGTGAATTC  1198
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCGTGGGACCCATTGGTCAGCAAGCCTAGTTGTCCTGGTGAATTC  1177