BAC Information

Click to search

BAC

Clone NameB6Ng01-162H13
Chromosome3 (Build37)
Map Location 103,022,822 - 103,159,302
singlet/doubletdoublet
Overlap geneTrim33
Upstream geneEG433633, Ngfb, Tspan2, Tshb, Sycp1, LOC668425, LOC100043517, Nr1h5, 5730470L24Rik, Csde1, Nras, Ampd1, Dennd2c, Bcas2
Downstream geneSyt6, Atg4a-ps, LOC100043538, Olfml3, Hipk1, Dclre1b, Ap4b1, Gm566, Ptpn22, LOC668452, Rsbn1, Phtf1, Magi3, EG433634
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162H13.bB6Ng01-162H13.g
ACCDH955302DH955303
length1,1841,231
definitionDH955302|Mus musculus domesticus DNA, BAC clone: B6Ng01-162H13, 5' end.DH955303|Mus musculus domesticus DNA, BAC clone: B6Ng01-162H13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,022,822 - 103,024,024)(103,158,074 - 103,159,302)
sequence
gaattctaggaaaggccgattcagtttcatcccatacaactttaggacca
tcgttagtggctcatcttgatgggctgaaggagcagggagtgctagctag
agaaggtttgtgtccataacgctttgggtggatggagattcctttccaag
cagacactggggaagacattcttatgtgtctcaagactctccaaaactag
agggtaaagagtaacttaccaactgttgttgcggggaatattagaaagtg
aacccaccaactctcttgccccactggtcctcgtttctgctctagtaccg
gtactggcaggccacacactatgtgcaggcggggtccagctccgcgtgtt
ctcaccactgagcgagctactctctcccagctagcgagttcatctcgctt
ccacgcagcgccccgacaccccataatcagccatttcaacacctaattac
ccggtagaatcaagcttatagttaaccaattagatctatgtattaatatt
atcacattttacaagatgccaatacaataatttcagagccaattgataat
gataaaactttagcccaataattctaaccttttgatcacaccactttggc
ctccattctagttcttctctccctcctgtcacctctttctgtctccccaa
ctcctagctcctcctcccttttcctatccaatcacaggcctgccactgcc
ctaatgtgattggacaggaaaaagcctgcaaaaaatggttaccggcatct
cttggacaacctgttgtctcctcccaactctggaaggggtatactctggt
gcattttcctaagacactaatgtgaccagtcactccaggtccaggttaaa
ggtggtagtcacctagagatggccagagagtgcatttgctaaagattcaa
ggggacccttatgtagataaatctatactgggactgttgttacagtcaaa
tgttcaggcctgatcagctattatcaaagacacagaccaatacacaaagc
acactgactacacttctcctaaagactacaaaagaatacagtgaagcttt
cttcatcttagtgctgtagctctgatagctagtgctggacaatcacagcc
acccggagccaccagcatgccagatccagtacaggttcattaaagaagat
caataggcaagtaagaaatgcctggtaataaata
gaattctactttggtcactttatattctactgtgtccatacagaagtagg
actacaactcttaatccagcggagaggcgcacacagtctagagcacactt
gatctgagcgtcacaacgcagaggaggaagataaacccgagcgagcacac
ctgtctgctgcaggtcggctcctgccgtcaggtagtaacaaggttgggtt
tgttccaattaccattcaagtggggattggctcgttctcaggatttactt
aaaggtctcttctaagtcattcaaagcccccagtccatgcacgtgtccca
cttggtggacagatgagtaatctaaccccaccgggtttatttcagtattt
tgatatttcaataataagctgcttctgaagattttttgagacgtctgttc
tctattaaaataagatagaacctcaaaatatgaatgtgaacattagaaat
agacagcatatattacaaatccattcttggtaggaacattagtaagaata
cacattagcttaaaaaacaggctcagcaaatgttgctgatctgccagaag
tctgagctcactatttacaaataagacaaagtgaaatacagaaaattgta
cacatttggtagctgacagatttctgtttaccaatagtggtctactggaa
actggtatgaagaagactaggttaaagttgtcaccttctcaatctaatta
acctacacagaaaattctgaaataaatgtcctgctttcaggggaatgact
aactgcgtgatcagatgatttgaccagtaagtgtaattgtttggagggtt
ttctggaaatgacttccataaatctgtatgatccactactaaaagttatc
atcattttagtacaccaccgaagttgactaaacgatcaatggttatgttc
ctagaccctacatctaagaataaaataaactactgctgagttctttaaac
caactttaaaactaggccaaatagatcaaatgagagaaaatgcagtggca
tgattcatgcatctttagtgacattcaagtggaatctcatgtacccactt
ttaaccagataacacccatttgtatccgggggagggaaaggcttttaagt
tatcttggaggtacctttgtggctccacagagaaccacttctcgcatggc
tggccactctagtatcctggccaattatactgacctggatcctaccattt
tctaacagccagagaaacgcctctcatttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_103022822_103024024
seq2: B6Ng01-162H13.b_50_1233

seq1  GAATTCTAGGAAAGGCCGATTCAGTTTCATCCCATACAACTTTAGGACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGAAAGGCCGATTCAGTTTCATCCCATACAACTTTAGGACCA  50

seq1  TCGTTAGTGGCTCATCTTGATGGGCTGAAGGAGCAGGGAGTGCTAGCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTAGTGGCTCATCTTGATGGGCTGAAGGAGCAGGGAGTGCTAGCTAG  100

seq1  AGAAGGTTTGTGTCCATAACGCTTTGGGTGGATGGAGATTCCTTTCCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTTTGTGTCCATAACGCTTTGGGTGGATGGAGATTCCTTTCCAAG  150

seq1  CAGACACTGGGGAAGACATTCTTATGTGTCTCAAGACTCTCCAAAACTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACTGGGGAAGACATTCTTATGTGTCTCAAGACTCTCCAAAACTAG  200

seq1  AGGGTAAAGAGTAACTTACCAACTGTTGTTGCGGGGAATATTAGAAAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAAAGAGTAACTTACCAACTGTTGTTGCGGGGAATATTAGAAAGTG  250

seq1  AACCCACCAACTCTCTTGCCCCACTGGTCCTCGTTTCTGCTCTAGTACCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCACCAACTCTCTTGCCCCACTGGTCCTCGTTTCTGCTCTAGTACCG  300

seq1  GTACTGGCAGGCCACACACTATGTGCAGGCGGGGTCCAGCTCCGCGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGCAGGCCACACACTATGTGCAGGCGGGGTCCAGCTCCGCGTGTT  350

seq1  CTCACCACTGAGCGAGCTACTCTCTCCCAGCTAGCGAGTTCATCTCGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCACTGAGCGAGCTACTCTCTCCCAGCTAGCGAGTTCATCTCGCTT  400

seq1  CCACGCAGCGCCCCGACACCCCATAATCAGCCATTTCAACACCTAATTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCAGCGCCCCGACACCCCATAATCAGCCATTTCAACACCTAATTAC  450

seq1  CCGGTAGAATCAAGCTTATAGTTAACCAATTAGATCTATGTATTAATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTAGAATCAAGCTTATAGTTAACCAATTAGATCTATGTATTAATATT  500

seq1  ATCACATTTTACAAGATGCCAATACAATAATTTCAGAGCCAATTGATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATTTTACAAGATGCCAATACAATAATTTCAGAGCCAATTGATAAT  550

seq1  GATAAAACTTTAGCCCAATAATTCTAACCTTTTGATCACACCACTTTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAACTTTAGCCCAATAATTCTAACCTTTTGATCACACCACTTTGGC  600

seq1  CTCCATTCTAGTTCTTCTCTCCCTCCTGTCACCTCTTTCTGTCTCCCCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTCTAGTTCTTCTCTCCCTCCTGTCACCTCTTTCTGTCTCCCCAA  650

seq1  CTCCTAGCTCCTCCTCCCTTTTCCTATCCAATCACAGGCCTGCCACTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGCTCCTCCTCCCTTTTCCTATCCAATCACAGGCCTGCCACTGCC  700

seq1  CTAATGTGATTGGACAGGAAAAAGCCTGCAAAAAATGGTTACCGGCATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTGATTGGACAGGAAAAAGCCTGCAAAAAATGGTTACCGGCATCT  750

seq1  CTTGGACAACCTGTTGTCTCCTCCCAACTCTGGAAGGGGTATACTCTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGACAACCTGTTGTCTCCTCCCAACTCTGGAAGGGGTATACTCTGGT  800

seq1  GCATTTTCCTAAGACACTAATGTGACCAGTCACTCCAGGTCCAGGTT-AA  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCATTTTCCTAAGACACTAATGTGACCAGTCACTCCAGGTCCAGGTTAAA  850

seq1  GGTGGTAGTCACCTAGAGATGGCCAGAGAGTGCATTTGCTAAAGATTCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTAGTCACCTAGAGATGGCCAGAGAGTGCATTTGCTAAAGATTCAA  900

seq1  GGGGACCCTTATGTAGATAAATCTATACTGGGACTGTTGTTACAGTCAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGGGACCCTTATGTAGATAAATCTATACTGGGACTGTTGTTACAGTC-AA  949

seq1  ATGTTCAGGCCTGATCAAGCTAATTATCAAAGACACAGACCAATACACAA  999
      |||||||||||||||| |||| |||||||||||||||||||||||||| |
seq2  ATGTTCAGGCCTGATC-AGCT-ATTATCAAAGACACAGACCAATACAC-A  996

seq1  AAGCACCACTGACCTACACTTCTCCCTAAAGACTACCAAAAGAATACAGT  1049
      ||||| |||||| |||||||||| ||||||||||| ||||||||||||||
seq2  AAGCA-CACTGA-CTACACTTCT-CCTAAAGACTA-CAAAAGAATACAGT  1042

seq1  GAAGGCTTTC-TCATCTTAGGTGCCTGTAGCTCTGATAGCTAAGGTGCTG  1098
      ||| |||||| |||||||| ||| ||||||||||||||||||  ||||||
seq2  GAA-GCTTTCTTCATCTTA-GTG-CTGTAGCTCTGATAGCTA--GTGCTG  1087

seq1  GACAAATCAACAGCCACCC-GAGCAACCAAAGCCAATGGCAGGATTCCCA  1147
      ||| |||| |||||||||| |||| |||  |||  ||| || |||  |||
seq2  GAC-AATC-ACAGCCACCCGGAGCCACC--AGC--ATGCCA-GAT--CCA  1128

seq1  GTACAGTTTCA-TGAAGAAG-TACATAGGGCCAAGTTTTAAGAAATGCCT  1195
      |||||| |||| | |||||| |  |||||  ||||   ||||||||||||
seq2  GTACAGGTTCATTAAAGAAGATCAATAGG--CAAG---TAAGAAATGCCT  1173

seq1  G---ATAAATA  1203
      |   |||||||
seq2  GGTAATAAATA  1184

seq1: chr3_103158074_103159302
seq2: B6Ng01-162H13.g_67_1297 (reverse)

seq1  ACAAATGA-AGACGGTTCTCTGGCTGTTAGAAA--TGTAGATGAT-CATG  46
      |||||||| || || ||||||||||||||||||   ||||  ||| || |
seq2  ACAAATGAGAGGCGTTTCTCTGGCTGTTAGAAAATGGTAG--GATCCAGG  48

seq1  TCTG-ATAATTGGTGCAGGATACT-GAGTTGGGCAAGCC-TGCGAGATGT  93
      || | ||||||||  ||||||||| ||||  ||| |||| ||||||| ||
seq2  TCAGTATAATTGG-CCAGGATACTAGAGT--GGCCAGCCATGCGAGAAGT  95

seq1  G--TCTCTGCTGGAG-CACACAGGTAC--TCAAGATAACTTAAAAGCCTT  138
      |  |||||| ||||| |||| ||||||   ||||||||||||||||||||
seq2  GGTTCTCTG-TGGAGCCACAAAGGTACCTCCAAGATAACTTAAAAGCCTT  144

seq1  CCCCT-CCACAGATACAAATGGGTTGTTTTCTGGTTAAAAGTGAGTACAT  187
       |||| || | |||||||||||| |||| |||||||||||||| ||||||
seq2  TCCCTCCCCCGGATACAAATGGG-TGTTATCTGGTTAAAAGTGGGTACAT  193

seq1  GAGATTCCACTTGAATGTCACTAAAGATGCATTGAATCATGCCACTGCAT  237
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAGATTCCACTTGAATGTCACTAAAGATGCA-TGAATCATGCCACTGCAT  242

seq1  TTTCTCTCATTTTGATCTATTTGGCCTTAGTTTTTAAGTTGGTTTAAAGA  287
      ||||||||| |||||||||||||||| ||||||| |||||||||||||||
seq2  TTTCTCTCA-TTTGATCTATTTGGCC-TAGTTTTAAAGTTGGTTTAAAGA  290

seq1  ACTCAGCAGTAGTTTTATTTTATTCTTAGATGTAGGGTCTAGGAACATAA  337
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACTCAGCAGTAG-TTTATTTTATTCTTAGATGTAGGGTCTAGGAACATAA  339

seq1  CCATTGATCGTTTAGTCAACTTCGGTGGTGTACTAAAATGATGATAACTT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGATCGTTTAGTCAACTTCGGTGGTGTACTAAAATGATGATAACTT  389

seq1  TTAGTAGTGGATCATACAGATTTATGGAAGTCATTTCCAGAAAACCCTCC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGTGGATCATACAGATTTATGGAAGTCATTTCCAGAAAACCCTCC  439

seq1  AAACAATTACACTTACTGGTCAAATCATCTGATCACGCAGTTAGTCATTC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATTACACTTACTGGTCAAATCATCTGATCACGCAGTTAGTCATTC  489

seq1  CCCTGAAAGCAGGACATTTATTTCAGAATTTTCTGTGTAGGTTAATTAGA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAAGCAGGACATTTATTTCAGAATTTTCTGTGTAGGTTAATTAGA  539

seq1  TTGAGAAGGTGACAACTTTAACCTAGTCTTCTTCATACCAGTTTCCAGTA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAGGTGACAACTTTAACCTAGTCTTCTTCATACCAGTTTCCAGTA  589

seq1  GACCACTATTGGTAAACAGAAATCTGTCAGCTACCAAATGTGTACAATTT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTATTGGTAAACAGAAATCTGTCAGCTACCAAATGTGTACAATTT  639

seq1  TCTGTATTTCACTTTGTCTTATTTGTAAATAGTGAGCTCAGACTTCTGGC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATTTCACTTTGTCTTATTTGTAAATAGTGAGCTCAGACTTCTGGC  689

seq1  AGATCAGCAACATTTGCTGAGCCTGTTTTTTAAGCTAATGTGTATTCTTA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGCAACATTTGCTGAGCCTGTTTTTTAAGCTAATGTGTATTCTTA  739

seq1  CTAATGTTCCTACCAAGAATGGATTTGTAATATATGCTGTCTATTTCTAA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGTTCCTACCAAGAATGGATTTGTAATATATGCTGTCTATTTCTAA  789

seq1  TGTTCACATTCATATTTTGAGGTTCTATCTTATTTTAATAGAGAACAGAC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACATTCATATTTTGAGGTTCTATCTTATTTTAATAGAGAACAGAC  839

seq1  GTCTCAAAAAATCTTCAGAAGCAGCTTATTATTGAAATATCAAAATACTG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAAAAATCTTCAGAAGCAGCTTATTATTGAAATATCAAAATACTG  889

seq1  AAATAAACCCGGTGGGGTTAGATTACTCATCTGTCCACCAAGTGGGACAC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACCCGGTGGGGTTAGATTACTCATCTGTCCACCAAGTGGGACAC  939

seq1  GTGCATGGACTGGGGGCTTTGAATGACTTAGAAGAGACCTTTAAGTAAAT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGGACTGGGGGCTTTGAATGACTTAGAAGAGACCTTTAAGTAAAT  989

seq1  CCTGAGAACGAGCCAATCCCCACTTGAATGGTAATTGGAACAAACCCAAC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAACGAGCCAATCCCCACTTGAATGGTAATTGGAACAAACCCAAC  1039

seq1  CTTGTTACTACCTGACGGCAGGAGCCGACCTGCAGCAGACAGGTGTGCTC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTACTACCTGACGGCAGGAGCCGACCTGCAGCAGACAGGTGTGCTC  1089

seq1  GCTCGGGTTTATCTTCCTCCTCTGCGTTGTGACGCTCAGATCAAGTGTGC  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGGGTTTATCTTCCTCCTCTGCGTTGTGACGCTCAGATCAAGTGTGC  1139

seq1  TCTAGACTGTGTGCGCCTCTCCGCTGGATTAAGAGTTGTAGTCCTACTTC  1187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGACTGTGTGCGCCTCTCCGCTGGATTAAGAGTTGTAGTCCTACTTC  1189

seq1  TGTATGGACACAGTAGAATATAAAGTGACCAAAGTAGAATTC  1229
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGACACAGTAGAATATAAAGTGACCAAAGTAGAATTC  1231