BAC Information

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BAC

Clone NameB6Ng01-162O08
Chromosome3 (Build37)
Map Location 114,863,259 - 114,979,000
singlet/doubletdoublet
Overlap genenone
Upstream geneCol11a1, LOC100043220, Olfm3
Downstream geneEG546808, Edg1, Dph5, LOC626061, Slc30a7, Extl2, Vcam1, Gpr88, Cdc14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162O08.bB6Ng01-162O08.g
ACCDH955618DH955619
length1,1511,134
definitionDH955618|Mus musculus domesticus DNA, BAC clone: B6Ng01-162O08, 5' end.DH955619|Mus musculus domesticus DNA, BAC clone: B6Ng01-162O08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,977,842 - 114,979,000)(114,863,259 - 114,864,391)
sequence
gaattctccagagcactatatatcctaggatttctgtttattgtattcat
cagctctgctaaaaatgcatggacaggctggggagatgactcggttgatc
aaatccttgttgcacattcatgaggacctgaatttgggttatgtgtaaaa
atctgggagccaatgcatagctgtaaagccatcattggggaggcatagac
aggggaaatcctgaggtctgctggacagccaggttaccaaatcagtgagc
tccaggttcaataaaaatctgtgcctaaaaaataaaatagaaaaagatac
ctagtgctaatatgtgatctctacacatatgtatgtgtgtacgcacatat
aaaaatgtacctacgccaacacaaactcatacaaagctgtagagagtcag
tattaaactctttatagagtatattgatctattttattttcatttaaaat
tcgtgtgattttagaactcacagtgtatggtaaaataagctttcagaaac
aaagagaaaactgctaaaatatttttagttttagtagtttttggtacagt
atgtaaattttctgtgcacaggatcacaaatgtttctttttatcaaagga
aaaccatggtgttctgtggataatgtaaaagtggaaactgtgaaaatacc
ggagccagtgaagacttctggtgctcatgggaactggagtctagatttac
atggaggattctgtattatcttttccattgtgtatgtcttttacattttc
acatctggatgaaaagaaataatgttcagtcagccaagttttattgacat
gtttcagactgaaacgcaagataatttgcatttgtattttattgacttct
ccgtagtactcagaatctttaaaataaatagcctctggcatttcactttt
cctcattctgctgaagctatggcttgactgctttcctctcccttggaaaa
tagactgtggctttctgtaatgactgttgcagattcaaagggaacatttg
attattggggccattttactctttatgttttaggaattttgtgatctctt
aaaagttaacttgttctcataattaaactgatacgtacctcaatttcttg
tgcatgctctgctgggcaagcaacatatttagcagatgaaatgacttaga
t
gaattctacagtgggtcctattttaattatatcaaaaggggtgatgttaa
atcatgcaatgaataagaaggaaataaaagaaccttagcctagataaaat
aattatagaatctagataaaataattatagaataagtctcatttggcttg
gctttaagtgtgtctcttctactcaatacaaaagaagaacaaatattaaa
accatagttttaagctggacacgggagaaagaaaagcaaaatatctacct
tgaagtctgtggaaaatattctcgatcagtcagatgcctgaagcagagac
atttcctactctgaactttttcatgaaaaccttccttttgctgtcccttt
aattctagtccctggtgttcactaagtggaaacctccgtttctttggatt
ctttaaattatattatttctctcttctttttttttttccttcacccaaac
aatgctgtgcttagaatcagtgtggagccacagagatctgaatttgattt
ccagcattctgaccttgagaaagtttctgggatttaccaagcaagcttgc
tacttcaaaagaatgtctgacactgggtaatttataaagctaaggcattt
gtgcttcatcattctggaagctaggaagttcaaagtttagggaactatac
ttggtaatttttaaattttcttttttgaaaaattgagcctgctttgtttt
gaagtagtttatttttcatataatgtatttggattatgctttccctcaga
tccttcctatttacccacccacccaaagcatctctgtctctctctgtctc
tctgtctctctgtctctgtctctgtctctctctgtctctctctctctctc
tctctctctctctctctctcattatgatataaacagaatctaaatagtat
tagtagtaataaaattcacaaaccaaattatgttctttgtgtattattcc
atggcagaaggcaggcaagaggcagatatagagatgtgagaacgcaggaa
gatgagataaaaatacatttttttttctttgggaccccactttttatagt
actaaatcactccgcagtatgttgcacaagccagtccactgttttaacct
atctttcatctattataattctgggatagctttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_114977842_114979000
seq2: B6Ng01-162O08.b_48_1198 (reverse)

seq1  ATCTAAGTCATTTTCATCCTGCTAAATTATGTTGCCTGCCCAGCAGAGCA  50
      |||||||||| |||||| |||||||| |||||||| ||||||||||||| 
seq2  ATCTAAGTCA-TTTCAT-CTGCTAAA-TATGTTGCTTGCCCAGCAGAGC-  46

seq1  ATGCCACCAAGAAA-TGAGGTACGTATCAGGTTTAAATTATTGAGAAC-A  98
      ||||   ||||||| |||||||||||||||  || ||||| ||||||| |
seq2  ATGC--ACAAGAAATTGAGGTACGTATCAG--TTTAATTA-TGAGAACAA  91

seq1  GTTAACTTTTAAGAGGATCAACAAAATTCCTTAAACATAAAGAGTAAAAT  148
      |||||||||||||| |||| ||||||||||| ||||||||||||||||||
seq2  GTTAACTTTTAAGA-GATC-ACAAAATTCCTAAAACATAAAGAGTAAAAT  139

seq1  GGCCCCAATAATCAATTGTTCCCTTTGAATCTGCAACAGTCATTACAGAA  198
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGCCCCAATAATCAAATGTTCCCTTTGAATCTGCAACAGTCATTACAGAA  189

seq1  AGCCACAGTCTATTTTCCAAGGGAGAGGAAAGCAGTCAAGCCATAGCTTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGTCTATTTTCCAAGGGAGAGGAAAGCAGTCAAGCCATAGCTTC  239

seq1  AGCAGAATGAGG-AAAGTGAAATGCCAGAGGCTATTTATTTTAAAGATTC  297
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGCAGAATGAGGAAAAGTGAAATGCCAGAGGCTATTTATTTTAAAGATTC  289

seq1  TGAGTACTACGGAGAAGTCAATAAAATACAAATGCAAATTATCTTGCGTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTACTACGGAGAAGTCAATAAAATACAAATGCAAATTATCTTGCGTT  339

seq1  TCAGTCTGAAACATGTCAATAAAACTTGGCTGACTGAACATTATTTCTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTGAAACATGTCAATAAAACTTGGCTGACTGAACATTATTTCTTT  389

seq1  TCATCCAGATGTGAAAATGTAAAAGACATACACAATGGAAAAGATAATAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAGATGTGAAAATGTAAAAGACATACACAATGGAAAAGATAATAC  439

seq1  AGAATCCTCCATGTAAATCTAGACTCCAGTTCCCATGAGCACCAGAAGTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCTCCATGTAAATCTAGACTCCAGTTCCCATGAGCACCAGAAGTC  489

seq1  TTCACTGGCTCCGGTATTTTCACAGTTTCCACTTTTACATTATCCACAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGGCTCCGGTATTTTCACAGTTTCCACTTTTACATTATCCACAGA  539

seq1  ACACCATGGTTTTCCTTTGATAAAAAGAAACATTTGTGATCCTGTGCACA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATGGTTTTCCTTTGATAAAAAGAAACATTTGTGATCCTGTGCACA  589

seq1  GAAAATTTACATACTGTACCAAAAACTACTAAAACTAAAAATATTTTAGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTTACATACTGTACCAAAAACTACTAAAACTAAAAATATTTTAGC  639

seq1  AGTTTTCTCTTTGTTTCTGAAAGCTTATTTTACCATACACTGTGAGTTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTCTTTGTTTCTGAAAGCTTATTTTACCATACACTGTGAGTTCT  689

seq1  AAAATCACACGAATTTTAAATGAAAATAAAATAGATCAATATACTCTATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCACACGAATTTTAAATGAAAATAAAATAGATCAATATACTCTATA  739

seq1  AAGAGTTTAATACTGACTCTCTACAGCTTTGTATGAGTTTGTGTTGGCGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTTAATACTGACTCTCTACAGCTTTGTATGAGTTTGTGTTGGCGT  789

seq1  AGGTACATTTTTATATGTGCGTACACACATACATATGTGTAGAGATCACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACATTTTTATATGTGCGTACACACATACATATGTGTAGAGATCACA  839

seq1  TATTAGCACTAGGTATCTTTTTCTATTTTATTTTTTAGGCACAGATTTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCACTAGGTATCTTTTTCTATTTTATTTTTTAGGCACAGATTTTT  889

seq1  ATTGAACCTGGAGCTCACTGATTTGGTAACCTGGCTGTCCAGCAGACCTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACCTGGAGCTCACTGATTTGGTAACCTGGCTGTCCAGCAGACCTC  939

seq1  AGGATTTCCCCTGTCTATGCCTCCCCAATGATGGCTTTACAGCTATGCAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTCCCCTGTCTATGCCTCCCCAATGATGGCTTTACAGCTATGCAT  989

seq1  TGGCTCCCAGATTTTTACACATAACCCAAATTCAGGTCCTCATGAATGTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCCAGATTTTTACACATAACCCAAATTCAGGTCCTCATGAATGTG  1039

seq1  CAACAAGGATTTGATCAACCGAGTCATCTCCCCAGCCTGTCCATGCATTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGGATTTGATCAACCGAGTCATCTCCCCAGCCTGTCCATGCATTT  1089

seq1  TTAGCAGAGCTGATGAATACAATAAACAGAAATCCTAGGATATATAGTGC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGAGCTGATGAATACAATAAACAGAAATCCTAGGATATATAGTGC  1139

seq1  TCTGGAGAATTC  1159
      ||||||||||||
seq2  TCTGGAGAATTC  1151

seq1: chr3_114863259_114864391
seq2: B6Ng01-162O08.g_68_1201

seq1  GAATTCTACAGTGGGTCCTATTTTAATTATATCAAAAGGGGTGATGTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGTGGGTCCTATTTTAATTATATCAAAAGGGGTGATGTTAA  50

seq1  ATCATGCAATGAATAAGAAGGAAATAAAAGAACCTTAGCCTAGATAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCAATGAATAAGAAGGAAATAAAAGAACCTTAGCCTAGATAAAAT  100

seq1  AATTATAGAATCTAGATAAAATAATTATAGAATAAGTCTCATTTGGCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAGAATCTAGATAAAATAATTATAGAATAAGTCTCATTTGGCTTG  150

seq1  GCTTTAAGTGTGTCTCTTCTACTCAATACAAAAGAAGAACAAATATTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAGTGTGTCTCTTCTACTCAATACAAAAGAAGAACAAATATTAAA  200

seq1  ACCATAGTTTTAAGCTGGACACGGGAGAAAGAAAAGCAAAATATCTACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGTTTTAAGCTGGACACGGGAGAAAGAAAAGCAAAATATCTACCT  250

seq1  TGAAGTCTGTGGAAAATATTCTCGATCAGTCAGATGCCTGAAGCAGAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCTGTGGAAAATATTCTCGATCAGTCAGATGCCTGAAGCAGAGAC  300

seq1  ATTTCCTACTCTGAACTTTTTCATGAAAACCTTCCTTTTGCTGTCCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTACTCTGAACTTTTTCATGAAAACCTTCCTTTTGCTGTCCCTTT  350

seq1  AATTCTAGTCCCTGGTGTTCACTAAGTGGAAACCTCCGTTTCTTTGGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAGTCCCTGGTGTTCACTAAGTGGAAACCTCCGTTTCTTTGGATT  400

seq1  CTTTAAATTATATTATTTCTCTCTTCTTTTTTTTTTTCCTTCACCCAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAATTATATTATTTCTCTCTTCTTTTTTTTTTTCCTTCACCCAAAC  450

seq1  AATGCTGTGCTTAGAATCAGTGTGGAGCCACAGAGATCTGAATTTGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGTGCTTAGAATCAGTGTGGAGCCACAGAGATCTGAATTTGATTT  500

seq1  CCAGCATTCTGACCTTGAGAAAGTTTCTGGGATTTACCAAGCAAGCTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATTCTGACCTTGAGAAAGTTTCTGGGATTTACCAAGCAAGCTTGC  550

seq1  TACTTCAAAAGAATGTCTGACACTGGGTAATTTATAAAGCTAAGGCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAAAAGAATGTCTGACACTGGGTAATTTATAAAGCTAAGGCATTT  600

seq1  GTGCTTCATCATTCTGGAAGCTAGGAAGTTCAAAGTTTAGGGAACTATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCATCATTCTGGAAGCTAGGAAGTTCAAAGTTTAGGGAACTATAC  650

seq1  TTGGTAATTTTTAAATTTTCTTTTTTGAAAAATTGAGCCTGCTTTGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAATTTTTAAATTTTCTTTTTTGAAAAATTGAGCCTGCTTTGTTTT  700

seq1  GAAGTAGTTTATTTTTCATATAATGTATTTGGATTATGCTTTCCCTCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGTTTATTTTTCATATAATGTATTTGGATTATGCTTTCCCTCAGA  750

seq1  TCCTTCCTATTTACCCACCCACCCAAAGCATCTCTGTCTCTCTCTGTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTATTTACCCACCCACCCAAAGCATCTCTGTCTCTCTCTGTCTC  800

seq1  TCTGTCTCTCTGTCTCTGTCTCTGTCTCTCTCTGTCTCTCTCTCTCTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTCTGTCTCTGTCTCTGTCTCTCTCTGTCTCTCTCTCTCTCTC  850

seq1  TCTCTCTCTCTCTCTCTCTCATTATGATATAAACAGAATCTAAATAGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCTCTCTCTCTCTCTCTCTCATTATGATATAAACAGAATCTAAATAGTAT  900

seq1  TAGTAGTAATAAAATTCACAAACCAAATAATGTTCTTTGTGTATTATTCC  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAGTAGTAATAAAATTCACAAACCAAATTATGTTCTTTGTGTATTATTCC  950

seq1  ATGGCAGAAGGCAGGCAAGAGGCAGATATAGAGGAAGTGAGAAAGGCAGG  1000
      |||||||||||||||||||||||||||||||| || ||||| || |||||
seq2  ATGGCAGAAGGCAGGCAAGAGGCAGATATAGA-GATGTGAG-AACGCAGG  998

seq1  AAAGATGAGGATAAAAATACA-TTTTTTTTCTTTGGGAACCCAC-TTTTA  1048
       ||||||| |||||||||||| |||||||||||||||| ||||| |||||
seq2  -AAGATGA-GATAAAAATACATTTTTTTTTCTTTGGGACCCCACTTTTTA  1046

seq1  TAGTAACTAAATCACT-CGCAGTATGTGCAACAAGCCAGT-CACTG-TTT  1095
      |||| ||||||||||| ||||||||||   |||||||||| ||||| |||
seq2  TAGT-ACTAAATCACTCCGCAGTATGTTGCACAAGCCAGTCCACTGTTTT  1095

seq1  AAACTATCTTTCATC-ATTATAA-TCTGGATTAAGCTTTC  1133
      || |||||||||||| ||||||| |||||  | |||||||
seq2  AACCTATCTTTCATCTATTATAATTCTGGGAT-AGCTTTC  1134