BAC Information

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BAC

Clone NameB6Ng01-162P02
Chromosome3 (Build37)
Map Location 35,449,638 - 35,450,762
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622074, Sox2, LOC100041108, LOC665655, Ube2l3-ps1
Downstream geneLOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103, Anxa5, 1810062G17Rik, LOC665709
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-162P02.bB6Ng01-162P02.g
ACCDH955652DH955653
length1,1721,121
definitionDH955652|Mus musculus domesticus DNA, BAC clone: B6Ng01-162P02, 5' end.DH955653|Mus musculus domesticus DNA, BAC clone: B6Ng01-162P02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaagtgtttaaagaagactcaaagaaacagttcaatagaattaa
gggaaaagagcttagggaaaagaaatgatgcccaagaaaatgcaaacata
cagctgatatgaatgatgaagacaatccagaacagaattcaataaagaga
cagaaacaatgaagagatcttaagctgagatgaaaatggaattgaaaaat
cccagtaactcaactagaaaactcaaaggaaagcattgcaagtagaaaca
atcaaaaagaaaatatactctcaggaatcaaaggtaaagtagaggattta
aaccaaagaggcaagggatataaaaaaacaatctgaaactacaagaaagg
aacacagaagaaatatgggacaccatttttttaaaaaacctgcaaattat
cggcatagttgagggagaagaatcccaagtcagtggcatagactggatct
tcaacaagattataggagaaaactcctcaaactaaggaaagatacataca
tacaaatacaaaagccatagagatcaccaaatagacaagaccataaaaga
aaaggtctacatcatattatagttaaaacacatagtatacataacaatgg
aagtgtattgaaaactgaaagaggaaaaaaacacaagtcacacataaagg
aaaacccatcagtgcaacagcggtttactcaatggaaattctgatagcca
gaaaagcaggaacagtgtattccaaatcccaaaagactatgatggcaagc
ctatactaatatacccagcaaaactatctgtcataaatcaagtagaaaga
aaaactttctacaacatagtctaatacacacacacacatatagatagata
gataggtagatagatagatagatagatagatagatagatagatagataga
tagacgacactcacacgcacatacacacacacacacacacatacacacac
accaagccaaatctacagaaactcagagaagcattattatggggtgaaga
agaggagtgagcatattgtagaaactgggccaagaaatactagcccaaat
attatacatatataccactgaggaaccaaacaacaccaaaaatcagtaac
caatgtcccatgacaccactcttttggataaataattaactgacctccat
ttctctatcaaaatgacttcag
gaattctcttggttgtctttaaattgtgctcatcgggtgtgcgccccatg
gacaatggagcctgagtgccatcctctgagttgtgaaggtgtgtagcaca
cttccttttgtaaaatcctactagaaaaaataaatttggggctggaaaaa
aaacatttggtggcacttccctttctatttgaattgataaaacattctct
ttctgttgcatttactgtcttctaagttccttttcttatctgtacacaca
catacacacacacacacacacacacacacatttcgcacacacacacacat
ttcaaacacacatctgcagtttcccctccctcttttccaccccattccac
tcctccacagctgtctctcttcagaaaatggcaggtctccctcccaagga
cctcaaccagccatggtatatcaagttgcagtaagagtaggctgctcctc
tcctactgaggctaggcaaggcagccaagtaggagggaagggtcccaaag
gcaggcagcagaggtagagactaagctcctcatgttttctcgtgcaaatc
cactagcagaagaccaaggaggaagaagacaaaccagtcctgaggttttt
agacaaaatctagtttcatgtgtgaaatagctcatttagatgtaaggaaa
aataaactgtgtatttgttcgagcatcagtaggaccatggggttgttggc
cacttgccagaacatagaactatagtgaggtcaggataggaagggaggtg
tcttagtcaaggtttctattcctgcacaaacatcatgaccaagaaacaag
ttggggatgaaagggtttattcagcttactctttcatactgctgttcatc
accaaaggaagtcaggactggaactcaagcatgtcagaaagcagagctga
tgcagaagccatggagggatgttctttactggcgtgcctcccttggcttg
ctcagcctgcttctcttattaaacccaagactaccaggccagagatggtt
ccaccccactagggcctttccccctgatcactaatttgagaagatgcctt
tacagcgggactcatggaggcatttcctcaactgagctcctttccctggg
tactccagctggtcaggttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_35449638_35450762
seq2: B6Ng01-162P02.g_65_1185 (reverse)

seq1  TCAACTTGACACAGCTGGAGTTACCACAGAGAAAGGAGCTTCAGTTGAGG  50
      ||||| |||| ||||||||| |||| ||| ||||||||| ||||||||||
seq2  TCAACCTGAC-CAGCTGGAG-TACC-CAGGGAAAGGAGC-TCAGTTGAGG  46

seq1  AAATGCCTCCATGAGATCCCGCTGT-AAGGCATCTTCTC-AATTAGTGAT  98
      ||||||||||||||| ||||||||| ||||||||||||| ||||||||||
seq2  AAATGCCTCCATGAG-TCCCGCTGTAAAGGCATCTTCTCAAATTAGTGAT  95

seq1  CAAGGGGGAAAGGCCCCTTGT-GGGTGGAACCATCTCTGGGCTGGTAGTC  147
      | ||||||||||| |||| || |||||||||||||||||| |||||||||
seq2  C-AGGGGGAAAGG-CCCTAGTGGGGTGGAACCATCTCTGGCCTGGTAGTC  143

seq1  TTGGGTTTTATAAGAG-AGCAGGCTGAGCAAGCCAAGGGAGGCACGCCAG  196
      |||||||| ||||||| |||||||||||||||||||||||||||||||||
seq2  TTGGGTTTAATAAGAGAAGCAGGCTGAGCAAGCCAAGGGAGGCACGCCAG  193

seq1  TAAAGAACATCCCTCCATGGCTTCTGCATCAGCTCCTGCTTTCTGACCTG  246
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  TAAAGAACATCCCTCCATGGCTTCTGCATCAGCT-CTGCTTTCTGACATG  242

seq1  CTTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAACAGCAGTATGAAAGA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAACAGCAGTATGAAAGA  292

seq1  GTAAGCTGAATAAACCCTTTCATCCCCAACTTGTTTCTTGGTCATGATGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTGAATAAACCCTTTCATCCCCAACTTGTTTCTTGGTCATGATGT  342

seq1  TTGTGCAGGAATAGAAACCTTGACTAAGACACCTCCCTTCCTATCCTGAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAGGAATAGAAACCTTGACTAAGACACCTCCCTTCCTATCCTGAC  392

seq1  CTCACTATAGTTCTATGTTCTGGCAAGTGGCCAACAACCCCATGGTCCTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTATAGTTCTATGTTCTGGCAAGTGGCCAACAACCCCATGGTCCTA  442

seq1  CTGATGCTCGAACAAATACACAGTTTATTTTTCCTTACATCTAAATGAGC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCTCGAACAAATACACAGTTTATTTTTCCTTACATCTAAATGAGC  492

seq1  TATTTCACACATGAAACTAGATTTTGTCTAAAAACCTCAGGACTGGTTTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCACACATGAAACTAGATTTTGTCTAAAAACCTCAGGACTGGTTTG  542

seq1  TCTTCTTCCTCCTTGGTCTTCTGCTAGTGGATTTGCACGAGAAAACATGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCCTCCTTGGTCTTCTGCTAGTGGATTTGCACGAGAAAACATGA  592

seq1  GGAGCTTAGTCTCTACCTCTGCTGCCTGCCTTTGGGACCCTTCCCTCCTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTAGTCTCTACCTCTGCTGCCTGCCTTTGGGACCCTTCCCTCCTA  642

seq1  CTTGGCTGCCTTGCCTAGCCTCAGTAGGAGAGGAGCAGCCTACTCTTACT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTGCCTTGCCTAGCCTCAGTAGGAGAGGAGCAGCCTACTCTTACT  692

seq1  GCAACTTGATATACCATGGCTGGTTGAGGTCCTTGGGAGGGAGACCTGCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTGATATACCATGGCTGGTTGAGGTCCTTGGGAGGGAGACCTGCC  742

seq1  ATTTTCTGAAGAGAGACAGCTGTGGAGGAGTGGAATGGGGTGGAAAAGAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGAAGAGAGACAGCTGTGGAGGAGTGGAATGGGGTGGAAAAGAG  792

seq1  GGAGGGGAAACTGCAGATGTGTGTTTGAAATGTGTGTGTGTGTGCGAAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGAAACTGCAGATGTGTGTTTGAAATGTGTGTGTGTGTGCGAAAT  842

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTACAGATAAGAAAAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTACAGATAAGAAAAG  892

seq1  GAACTTAGAAGACAGTAAATGCAACAGAAAGAGAATGTTTTATCAATTCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTAGAAGACAGTAAATGCAACAGAAAGAGAATGTTTTATCAATTCA  942

seq1  AATAGAAAGGGAAGTGCCACCAAATGTTTTTTTTCCAGCCCCAAATTTAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAGGGAAGTGCCACCAAATGTTTTTTTTCCAGCCCCAAATTTAT  992

seq1  TTTTTCTAGTAGGATTTTACAAAAGGAAGTGTGCTACACACCTTCACAAC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTAGTAGGATTTTACAAAAGGAAGTGTGCTACACACCTTCACAAC  1042

seq1  TCAGAGGATGGCACTCAGGCTCCATTGTCCATGGGGCGCACACCCGATGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGATGGCACTCAGGCTCCATTGTCCATGGGGCGCACACCCGATGA  1092

seq1  GCACAATTTAAAGACAACCAAGAGAATTC  1125
      |||||||||||||||||||||||||||||
seq2  GCACAATTTAAAGACAACCAAGAGAATTC  1121