BAC Information

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BAC

Clone NameB6Ng01-163B01
Chromosome3 (Build37)
Map Location 133,895,880 - 133,896,981
singlet/doubletsinglet
Overlap geneLOC100039199
Upstream gene9130221D24Rik, Ppa2, E130014J05Rik, EG620205, LOC100039168, LOC668862
Downstream geneCxxc4, Ppia-ps3_1390.1, LOC100039234, Tacr3, LOC229837, LOC100039290, EG620439, Cenpe
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163B01.bB6Ng01-163B01.g
ACCDH955745DH955746
length1,1131,098
definitionDH955745|Mus musculus domesticus DNA, BAC clone: B6Ng01-163B01, 5' end.DH955746|Mus musculus domesticus DNA, BAC clone: B6Ng01-163B01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttagagggattaacagaagctggcctcacctaaagtttatctct
aagccgtttgattcaggtttatgacatttcctgtaactgtatttctgctt
tctttgttgcttagtaaatctttatttgaacaacctagctctgtctaacc
tgtccttagatagttaaggaatcatcaattgttcctagatgccaaactgc
ccattaaatcatgaagaaactgtgtcttatggtggtaatctcaaagggta
ataattagtaaaatagccccccaggaggaaaaggaatctccaggtgagat
tcagagcttcatagtctgcacagttacctgacaggttattcttcaagtgt
tactgtgggtggagggttccagatgttcctcatacatttttttttctctt
ctccgtaatagagttataatcagtaggtgaccaccagggatctttgcagc
tatctgtggcaagttcccagttctcagcaagtgtgtggtagcttggatac
tgtgttccatttgaagaccaatcaatcttgcttcctctgtgcccttctgc
cagctgaacactggagaaatagttgatcccgaagtcccaggttagaagga
aatgggattcgtgaacccctcagagctggaacccctctgacctggaatga
ccatccttcggatggacaatgtatttctatcatttcctactgtgggaata
ttgggataatgactgtgatattgatcacagaagtatgctaaagatacaaa
cagcttgcaactacttggcagttgtggcaagcatcttgaagagcaatcct
taagttttggtatttctacagattatggatctttgatgagaactaacttt
gaaaattaacaagttggcaaactggtttccaaatcttctggcattttatc
cttgggggaaaaccatacagggcactagcggaaagaagatgtttggacat
tcaagtatcttagagtatttaaaaaataattgaggctggaaatggaaaat
gaaaagaaaatgttgcttattgcatttgggggagtctacgtttaattctc
tagtggaaagaagatggattgccatatttaaacctgaggaggactgttta
caaatttgccctg
gaattccttttctggtcgagtctatttggagttctgcaggcttcttgtat
gttcatgggcatctctttctttaggttatggaagttttcttctataattt
tgttgaagatatttactgtccctttaagttggaaatcttcactctcttct
atacctattacccctaggtttggtcttctcattgtgtcctagatttcctg
gatgttttgagttaggagttttttgctttttgcactttctttcactattg
tgtcaatgttttctatggtatcttctacacctgagattctctcgtctatg
tcttgtattctgttggtgatgcttgcatctatgactactgatctctttcc
taggttttctaactccagggttgtttcccgttgtgatttctttattgttt
atagttctatttttagatcctagatggttttgttcctttccttcacctgt
ttcattgtgtttttctgtaactctttaatttttgtggttcctctttaagg
gcttctacctgtttacctgtgttctcctgtatttctttaagggagttatt
tatgtcctttttaatgttctttatcatcatcatgagaattgattttagat
ctgaattttgctttttctggtgtgttggggtatccaggccttgctatggt
aggagaactgagttctgaggatgccaagtaacctggttttctgtagctta
tgttcttatgcttgcctccctccatctggttatctctagtgctacctgcc
ctgactatatctgactggagcctgtcctttctgtgatcctggctgtgtca
gaactcttctgagtcaagctgtctctgtgatcttgggattcttgggatcc
tgcgatcctgagatactggggtgtatccgagctcctgggagtcaagctgc
ctttgggacctttgaatcctggtgtgaccaagctctgggattctgtgatc
ctctgatcctgggtgtgttggagcacctggggcgtggagctgcctctggg
tgttgggggctggcttggtagatagtggccaaagtcacctcatgaggtat
cacattttaattttatgcttctcggttgatattaaccgaaaaactatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_133895880_133896981
seq2: B6Ng01-163B01.b_42_1154

seq1  GAATTCTTAGAGGGATTAACAGAAGCTGGCCTCACCTAAAGTTTATCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGAGGGATTAACAGAAGCTGGCCTCACCTAAAGTTTATCTCT  50

seq1  AAGCCGTTTGATTCAGGTTTATGACATTTCCTGTAACTGTATTTCTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCGTTTGATTCAGGTTTATGACATTTCCTGTAACTGTATTTCTGCTT  100

seq1  TCTTTGTTGCTTAGTAAATCTTTATTTGAACAACCTAGCTCTGTCTAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTGCTTAGTAAATCTTTATTTGAACAACCTAGCTCTGTCTAACC  150

seq1  TGTCCTTAGATAGTTAAGGAATCATCAATTGTTCCTAGATGCCAAACTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTAGATAGTTAAGGAATCATCAATTGTTCCTAGATGCCAAACTGC  200

seq1  CCATTAAATCATGAAGAAACTGTGTCTTATGGTGGTAATCTCAAAGGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAAATCATGAAGAAACTGTGTCTTATGGTGGTAATCTCAAAGGGTA  250

seq1  ATAATTAGTAAAATAGCCCCCCAGGAGGAAAAGGAATCTCCAGGTGAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAGTAAAATAGCCCCCCAGGAGGAAAAGGAATCTCCAGGTGAGAT  300

seq1  TCAGAGCTTCATAGTCTGCACAGTTACCTGACAGGTTATTCTTCAAGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCTTCATAGTCTGCACAGTTACCTGACAGGTTATTCTTCAAGTGT  350

seq1  TACTGTGGGTGGAGGGTTCCAGATGTTCCTCATACATTTTTTTTTCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGGGTGGAGGGTTCCAGATGTTCCTCATACATTTTTTTTTCTCTT  400

seq1  CTCCGTAATAGAGTTATAATCAGTAGGTGACCACCAGGGATCTTTGCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTAATAGAGTTATAATCAGTAGGTGACCACCAGGGATCTTTGCAGC  450

seq1  TATCTGTGGCAAGTTCCCAGTTCTCAGCAAGTGTGTGGTAGCTTGGATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTGGCAAGTTCCCAGTTCTCAGCAAGTGTGTGGTAGCTTGGATAC  500

seq1  TGTGTTCCATTTGAAGACCAATCAATCTTGCTTCCTCTGTGCCCTTCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCCATTTGAAGACCAATCAATCTTGCTTCCTCTGTGCCCTTCTGC  550

seq1  CAGCTGAACACTGGAGAAATAGTTGATCCCGAAGTCCCAGGTTAGAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGAACACTGGAGAAATAGTTGATCCCGAAGTCCCAGGTTAGAAGGA  600

seq1  AATGGGATTCGTGAACCCCTCAGAGCTGGAACCCCTCTGACCTGGAATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGATTCGTGAACCCCTCAGAGCTGGAACCCCTCTGACCTGGAATGA  650

seq1  CCATCCTTCGGATGGACAATGTATTTCTATCATTTCCTACTGTGGGAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTTCGGATGGACAATGTATTTCTATCATTTCCTACTGTGGGAATA  700

seq1  TTGGGATAATGACTGTGATATTGATCACAGAAGTATGCTAAAGATACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATAATGACTGTGATATTGATCACAGAAGTATGCTAAAGATACAAA  750

seq1  CAGCTTGCAACTACTTGGCAGTTGTGGCAAGCATCTTGAAGAGCAATCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGCAACTACTTGGCAGTTGTGGCAAGCATCTTGAAGAGCAATCCT  800

seq1  TAAGTTTTGGTATTTCTACAGAATTATGGATC-TTGATGAGAACTAAC-T  848
      ||||||||||||||||||||| |||||||||| ||||||||||||||| |
seq2  TAAGTTTTGGTATTTCTACAG-ATTATGGATCTTTGATGAGAACTAACTT  849

seq1  TGAAAATTAAC-AGTTGGCAAAC-AGTTTTCAAAACTTCTGGCATTTTAT  896
      ||||||||||| |||||||||||  |||| |||| |||||||||||||||
seq2  TGAAAATTAACAAGTTGGCAAACTGGTTTCCAAATCTTCTGGCATTTTAT  899

seq1  C--TTGGGGAAAACAATACAGGGCACTAGC-GAAAG-AGATG-TTGGACA  941
      |  | ||||||||| ||||||||||||||| ||||| ||||| |||||||
seq2  CCTTGGGGGAAAACCATACAGGGCACTAGCGGAAAGAAGATGTTTGGACA  949

seq1  TTCAAGTATCTAAGAGTATATAAAAAATAA-TGAGGCTGGAAATGGAAAA  990
      ||||||||||| ||||||| |||||||||| |||||||||||||||||||
seq2  TTCAAGTATCTTAGAGTATTTAAAAAATAATTGAGGCTGGAAATGGAAAA  999

seq1  -GAAAAGAAAATGTGCCTTATTGCATTTGGGGAAGTCTACAGTTAATTCT  1039
       |||||||||||||  |||||||||||||||| |||||||  ||||||||
seq2  TGAAAAGAAAATGTTGCTTATTGCATTTGGGGGAGTCTACGTTTAATTCT  1049

seq1  CTAGTGGAAAGAAGATGGA-TGCCATATTTAAAACCTGAGGAGGACTGTT  1088
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  CTAGTGGAAAGAAGATGGATTGCCATATTT-AAACCTGAGGAGGACTGTT  1098

seq1  TAC-AATTTGCCCTG  1102
      ||| |||||||||||
seq2  TACAAATTTGCCCTG  1113