BAC Information

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BAC

Clone NameB6Ng01-163B22
Chromosome3 (Build37)
Map Location 30,469,116 - 30,612,028
singlet/doubletdoublet
Overlap geneLOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik, E230002P03Rik
Upstream gene6130401L20Rik, LOC100040676, Evi1, Mds1, LOC100040727, LOC100040734
Downstream geneSamd7, Tloc1, Gpr160, Phc3, LOC100040809, Prkci, Skil, Cldn11, Slc7a14, LOC625125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163B22.bB6Ng01-163B22.g
ACCDH955787DH955788
length1,1371,050
definitionDH955787|Mus musculus domesticus DNA, BAC clone: B6Ng01-163B22, 5' end.DH955788|Mus musculus domesticus DNA, BAC clone: B6Ng01-163B22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,610,895 - 30,612,028)(30,469,116 - 30,470,160)
sequence
gaattcaccagagcagaaggggaaagaagtaggaaagtcagatataatag
aataattatgtacaccaaggccaactgaaaagcaatcatgcacaaatgaa
atctatacagctgttaggagaaatgggaacaactgttgtttttacaaaga
gctgctgtgggctactgagacgtctccattccagcctactgcaagcagtc
ccttatttcatttcagatggcaggtcccctggaagaatgtgtaccctgct
tctcagggtcccagataccattctttttttttttttttttttttccccaa
ggagctgctgagggcttctgagatgtctccatcccagtctgctgcgggca
gtccctgtcatggtatccccagcgttggaggaagggcatcactgtgtagg
tgggctttgaggtttcctatgctcaagttctgcccagtatggaatcagaa
cctcctcctggctgcctgcagaagtcagggcccctttgctgcctgcagat
catgatgtagaattcttggctcctctagcatcatgactgcctagatgctg
ccatgctttctgccatgatgataatggactgaatctctgaaattgtaagc
cagccccaattaaatgtttgcctttggggctggagaggtggctcagtggt
taagagcactgactgctcttccagaggtcctgagttcagttcccagcaat
cacatggtggctcacaaccatctgtaatgggatctgatgccccttgtctg
gtgtgtctgaagacagcaacagtgcacttgcataaaacaaataaatcttt
tttttaaaaaaaatctataaaaaagtatgagaattgccttggtcatgtcc
cttcacagcaatgaaatcctaaactaagacagatgatatgatccacagga
gaaaggacctatgtatgacatttgtcttctgtgtctggattaccttcgaa
gccagcactgtgtagactcatgcacgtgcttactacaccaatatcattag
tctcgcttgcgttccttttataacgaggttcattttaggtaatgttcaaa
aggcagaatgatcgatgcaacagggaatgggccgcttgagcaaccagcat
taagagcttgacgagagaactgcaagccactctggat
gaattctgaatgtctgacattgttcttgacatcgcctttcgtattccctg
ctttgtcagacacctcctctaaggttagaatcggattccttccatgggat
tgaatttctttccttttcttttctcttttttttttaaagatttctttatt
tattacatgtaagtacactgtagctgtcttcagactccccagaagagggt
atcagttctcattacagatggttgtgagccactatgtggtttctgagatt
tgaactcagaacctttggaagactagtcagtgctcttaactgctgagtca
tctctccagccccctaaattacttttctttaccttcattcttgagttgac
tcaaaacagttcttgtaaggaaaagggaagtggagaataggttaaattat
atagcagggcacactcacatggttcacccaacccaatcagagaaaacagt
ttatgggcttctctatagaaaggggcttgagtctgtgaatatcctggggt
gtccacaagactagacagtacagctgaggcctaatcacagaaatcgtctc
tctttagagctctgtctccatgtggagacattaagacagctttctctgac
ctgttccagatattacatgccaagcaatctatttagcactatattaaatt
ctgatggaataagagttagattttaaagtaagaatatccactaagtgtgg
tgactactcctgtaatgtcagcatgagtctgagcaagatcatgagatcaa
gaccagccagggcaacatagagttccaaaacagccagattcgaccatgtc
ccctaacccctaaatgccagtttatggttacctctctagtcggggacaga
gcattgatggaggacaggagaaacgcagaaatgagacaaacagtttaggg
acaagaatccccggttcatggtcctgggtcataagatacagaagaataca
gttgagaggcttacttggaagagcatggcatggaagtcaggcaaagtgag
gaaaagagaggatttgctttatacctgtattttttttatgtaatatgtat

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_30610895_30612028
seq2: B6Ng01-163B22.b_46_1182 (reverse)

seq1  ATCCAGAGTGGCTTGCAGTATCTCTCTGTCTAGCTCTT-ATGCTGGTTGC  49
      ||||||||||||||||||| |||||| ||| ||||||| |||||||||||
seq2  ATCCAGAGTGGCTTGCAGT-TCTCTC-GTCAAGCTCTTAATGCTGGTTGC  48

seq1  TCAAGGCAGCCCATT-CCTGTTGCATCGATCATTCTGCCTTTTGAACATT  98
      |||| || ||||||| ||||||||||||||||||||||||||||||||||
seq2  TCAA-GCGGCCCATTCCCTGTTGCATCGATCATTCTGCCTTTTGAACATT  97

seq1  ACTTAAAATG-ACCTCGTTAT-AGAGGAGCGC-AGCGAGACTAATGATAT  145
      || ||||||| |||||||||| | |||| ||| |||||||||||||||||
seq2  ACCTAAAATGAACCTCGTTATAAAAGGAACGCAAGCGAGACTAATGATAT  147

seq1  TGGTGTAGTAAGCACGTGCATGAGTCTACACAGTGCTGGCTTCGAAGGTA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTAGTAAGCACGTGCATGAGTCTACACAGTGCTGGCTTCGAAGGTA  197

seq1  ATCCAGACACAGAAAGACAAATGTCATACATAGGTCCTTTCTCCTGTGGA  245
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATCCAGACACAG-AAGACAAATGTCATACATAGGTCCTTTCTCCTGTGGA  246

seq1  TCATATCATCTGTCTTAG-TTAGGATTTCATTGCTGTGAAGGGACATGAC  294
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCATATCATCTGTCTTAGTTTAGGATTTCATTGCTGTGAAGGGACATGAC  296

seq1  CAAGGCAATTCTCATACTTTTTTATAGATTTTTTTTAAAAAAAAGATTTA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAATTCTCATACTTTTTTATAGATTTTTTTTAAAAAAAAGATTTA  346

seq1  TTTGTTTTATGCAAGTGCACTGTTGCTGTCTTCAGACACACCAGACAA-G  393
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTGTTTTATGCAAGTGCACTGTTGCTGTCTTCAGACACACCAGACAAGG  396

seq1  GGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGATTGCTGGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGATTGCTGGG  446

seq1  AACTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAG  496

seq1  CCACCTCTCCAGCCCCAAAGGCAAACATTTAATTGGGGCTGGCTTACAAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCTCCAGCCCCAAAGGCAAACATTTAATTGGGGCTGGCTTACAAT  546

seq1  TTCAGAGATTCAGTCCATTATCATCATGGCAGAAAGCATGGCAGCATCTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGATTCAGTCCATTATCATCATGGCAGAAAGCATGGCAGCATCTA  596

seq1  GGCAGTCATGATGCTAGAGGAGCCAAGAATTCTACATCATGATCTGCAGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTCATGATGCTAGAGGAGCCAAGAATTCTACATCATGATCTGCAGG  646

seq1  CAGCAAAGGGGCCCTGACTTCTGCAGGCAGCCAGGAGGAGGTTCTGATTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGGGGCCCTGACTTCTGCAGGCAGCCAGGAGGAGGTTCTGATTC  696

seq1  CATACTGGGCAGAACTTGAGCATAGGAAACCTCAAAGCCCACCTACACAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGGGCAGAACTTGAGCATAGGAAACCTCAAAGCCCACCTACACAG  746

seq1  TGATGCCCTTCCTCCAACGCTGGGGATACCATGACAGGGACTGCCCGCAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCCTTCCTCCAACGCTGGGGATACCATGACAGGGACTGCCCGCAG  796

seq1  CAGACTGGGATGGAGACATCTCAGAAGCCCTCAGCAGCTCCTTGGGGAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGGGATGGAGACATCTCAGAAGCCCTCAGCAGCTCCTTGGGGAAA  846

seq1  AAAAAAAAAAAAAAAAAAGAATGGTATCTGGGACCCTGAGAAGCAGGGTA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAGAATGGTATCTGGGACCCTGAGAAGCAGGGTA  896

seq1  CACATTCTTCCAGGGGACCTGCCATCTGAAATGAAATAAGGGACTGCTTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCTTCCAGGGGACCTGCCATCTGAAATGAAATAAGGGACTGCTTG  946

seq1  CAGTAGGCTGGAATGGAGACGTCTCAGTAGCCCACAGCAGCTCTTTGTAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGCTGGAATGGAGACGTCTCAGTAGCCCACAGCAGCTCTTTGTAA  996

seq1  AAACAACAGTTGTTCCCATTTCTCCTAACAGCTGTATAGATTTCATTTGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACAGTTGTTCCCATTTCTCCTAACAGCTGTATAGATTTCATTTGT  1046

seq1  GCATGATTGCTTTTCAGTTGGCCTTGGTGTACATAATTATTCTATTATAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATTGCTTTTCAGTTGGCCTTGGTGTACATAATTATTCTATTATAT  1096

seq1  CTGACTTTCCTACTTCTTTCCCCTTCTGCTCTGGTGAATTC  1134
      |||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTTCCTACTTCTTTCCCCTTCTGCTCTGGTGAATTC  1137

seq1: chr3_30469116_30470160
seq2: B6Ng01-163B22.g_66_1115

seq1  GAATTCTGAATGTCTGACATTGTTCTTGACATCGCCTTTCGTATTCCCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAATGTCTGACATTGTTCTTGACATCGCCTTTCGTATTCCCTG  50

seq1  CTTTGTCAGACACCTCCTCTAAGGTTAGAATCGGATTCCTTCCATGGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTCAGACACCTCCTCTAAGGTTAGAATCGGATTCCTTCCATGGGAT  100

seq1  TGAATTTCTTTCCTTTTCTTTTCTCTTTTTTTTTTAAAGATTTCTTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTCTTTCCTTTTCTTTTCTCTTTTTTTTTTAAAGATTTCTTTATT  150

seq1  TATTACATGTAAGTACACTGTAGCTGTCTTCAGACTCCCCAGAAGAGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACATGTAAGTACACTGTAGCTGTCTTCAGACTCCCCAGAAGAGGGT  200

seq1  ATCAGTTCTCATTACAGATGGTTGTGAGCCACTATGTGGTTTCTGAGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTCTCATTACAGATGGTTGTGAGCCACTATGTGGTTTCTGAGATT  250

seq1  TGAACTCAGAACCTTTGGAAGACTAGTCAGTGCTCTTAACTGCTGAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCAGAACCTTTGGAAGACTAGTCAGTGCTCTTAACTGCTGAGTCA  300

seq1  TCTCTCCAGCCCCCTAAATTACTTTTCTTTACCTTCATTCTTGAGTTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCAGCCCCCTAAATTACTTTTCTTTACCTTCATTCTTGAGTTGAC  350

seq1  TCAAAACAGTTCTTGTAAGGAAAAGGGAAGTGGAGAATAGGTTAAATTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACAGTTCTTGTAAGGAAAAGGGAAGTGGAGAATAGGTTAAATTAT  400

seq1  ATAGCAGGGCACACTCACATGGTTCACCCAACCCAATCAGAGAAAACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGGGCACACTCACATGGTTCACCCAACCCAATCAGAGAAAACAGT  450

seq1  TTATGGGCTTCTCTATAGAAAGGGGCTTGAGTCTGTGAATATCCTGGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGCTTCTCTATAGAAAGGGGCTTGAGTCTGTGAATATCCTGGGGT  500

seq1  GTCCACAAGACTAGACAGTACAGCTGAGGCCTAATCACAGAAATCGTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACAAGACTAGACAGTACAGCTGAGGCCTAATCACAGAAATCGTCTC  550

seq1  TCTTTAGAGCTCTGTCTCCATGTGGAGACATTAAGACAGCTTTCTCTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGAGCTCTGTCTCCATGTGGAGACATTAAGACAGCTTTCTCTGAC  600

seq1  CTGTTCCAGATATTACATGCCAAGCAATCTATTTAGCACTATATTAAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCAGATATTACATGCCAAGCAATCTATTTAGCACTATATTAAATT  650

seq1  CTGATGGAATAAGAGTTAGATTTTAAAGTAAGAATATCCACTAAGTGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGAATAAGAGTTAGATTTTAAAGTAAGAATATCCACTAAGTGTGG  700

seq1  TGACTACTCCTGTAATGTCAGCATGAGTCTGAGCAAGATCATGAGATCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTACTCCTGTAATGTCAGCATGAGTCTGAGCAAGATCATGAGATCAA  750

seq1  GACCAGCCAGGGCAACATAGAGTTCCAAAACAGCCAGATTCGACCATGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCCAGGGCAACATAGAGTTCCAAAACAGCCAGATTCGACCATGTC  800

seq1  CCCTAACCCCTAAATGCCAG-TTATGGTTACCTCTCTAGTCGGGGACAGA  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCCTAACCCCTAAATGCCAGTTTATGGTTACCTCTCTAGTCGGGGACAGA  850

seq1  GCATTGAT-GAGGACAGGAG-AACGCAGAAATGAGACAAACAGTTTAGGG  897
      |||||||| ||||||||||| |||||||||||||||||||||||||||||
seq2  GCATTGATGGAGGACAGGAGAAACGCAGAAATGAGACAAACAGTTTAGGG  900

seq1  ACAAGAATCCCC-GTTCATGGT-CTGGGTCATAAGATACAGAAGAATACA  945
      |||||||||||| ||||||||| |||||||||||||||||||||||||||
seq2  ACAAGAATCCCCGGTTCATGGTCCTGGGTCATAAGATACAGAAGAATACA  950

seq1  GTTGAGAGGC-TACTTGGAAGAGCATGGCATGGAAGTCAGGCAGAGTGAG  994
      |||||||||| |||||||||||||||||||||||||||||||| ||||||
seq2  GTTGAGAGGCTTACTTGGAAGAGCATGGCATGGAAGTCAGGCAAAGTGAG  1000

seq1  GAAAAGAGAGGATTTGCTTTTATAACTGTATTTTTTTTATGTTATATGTA  1044
      ||||||||||||||||| |||||| ||||||||||||||||| |||||||
seq2  GAAAAGAGAGGATTTGC-TTTATACCTGTATTTTTTTTATGTAATATGTA  1049

seq1  T  1045
      |
seq2  T  1050