BAC Information

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BAC

Clone NameB6Ng01-163K19
Chromosome3 (Build37)
Map Location 131,332,197 - 131,440,870
singlet/doubletdoublet
Overlap genenone
Upstream geneAgxt2l1, 2310008M10Rik, Rpl34, LOC546811, LOC545568, Lef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1
Downstream geneOlfr375-ps1, Dkk2, LOC100039018, EG433653, LOC668857, Scye1, A630047E20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163K19.bB6Ng01-163K19.g
ACCDH956202DH956203
length1,1151,094
definitionDH956202|Mus musculus domesticus DNA, BAC clone: B6Ng01-163K19, 5' end.DH956203|Mus musculus domesticus DNA, BAC clone: B6Ng01-163K19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,439,760 - 131,440,870)(131,332,197 - 131,333,280)
sequence
gaattcaggaacctataaaatttctgatggtttttacttgctaacccaag
agaagtgaagtgggtcaagattacgatcatcataccagtaaagcagagtc
tgtaaaattagcacattgttagaactatgaaagtgttcattactttgtgc
ctttatgtggtgtgtgtgtgtgtgtgtgtgtgttactatgtagctctgaa
actctccatgtagaccaggctagcctcactatcctcctgcctctgttcca
tactcctactgcttgtatttcagttgtatttcaggcatgcatcaccctgg
ctggtggatgaaaaatgtcttttgagaggaagtatagataaatcatggag
tctaagaaccctttctgtagaagttgaattggagatgaggtgagatgaac
caatttctgctttaaagagttggaatatactccattaagcctgctaactc
agcacttttggcagattctgatatcatgtgcagaattcaagtcttcttgg
ctctataatgagatgatctcatcactaagagggtccttgtccaggtatcc
aggatcctgttggaacagcatcttttggggggatctagttctctgtacag
accagtacagtgagtaaaaggtctgtgttccatcaactaatcaggaaaac
tatgtctataattttagttttatggtacattttcattcactactggataa
aagctattaagcagactctatgaaattgatggtaactttaattaacctct
aacaacctaaaattagaaaaaaaactctcctgggtagctcattcatgtgt
ctttgtccccacatcaagtactttgcaggatctcttgtagtctgtgcaaa
ctttttgtccacctggtctacctggtcttcctggtctacctggtctacct
gatctatctggtctatctggtctactactaatgttgctggctctttaaca
cctaagctaatgcttatttcctttgtttccttccccttgacccacctgcc
aaatgcctgtggtactatgggaattgtgatcagatcccccaaaagaattc
ctggctttctaagacacccaaaatttcctacatgagagaatttgcctact
attactcctaaattg
gaattccacgggttgaacactaaatgttttataggacaaaggaaatagac
agacacacacaatctgatactgccttggtactctatcagcaataaatttg
ttactgtctgctagtctgtgggtgccctagctatcagagtatagaacctg
aaagatatggtacggattgggttaaagatatcaccactgaccgacaacca
accaaaccaaaccaactaaaagcaaaaacaaacccaagcttatacagagg
gctaaatattgacctgaggtctgggagacctcaaatgtgagtagaactgg
ggacgataaccttggaaagcattacttttgagagaaagaagacaaataga
aaacaaaaaggagggttggagaggtggctcagtggttaagagcactagtt
gttcttccagaggtcttgagttcaatttccagcaatcatatggtggctca
caaccatctataatgacttctgatgcatgcaggtatacatgaagctagag
cattcatttacatgaaataaataaataaataaataattttaaaaacaaac
aaaaaagatggtacctgtaacagagatagaaaatgaggcagtaaaagatg
gaattagcaatcatacaggagtaaaaagaaaactcacaatcaaagaagtt
atccattcaagaagctagatgttactattttgacagaacaagctgatgtt
aaactggaaatcctaatgtctaaaaggaatatcagatgaccttcctaagg
aaggcactatgagaataaaacagaaagatttttactggtaaacatttcct
ccaaagaactggtcagacagcagattgataggtcatactgaattcagttt
caccaggcaagcatggaatttaaggaattcagcttcaggctggagggatg
actcaatgtttacaagagtttgtacctctatgggacctaggctgaggtcc
catcacccacatcagtggcctcacagatgcctgtaacttcagttctaggg
atttggacaccctttgccacctgacaggtacctgccacacccaccaaact
cacaccatatggctttacaccgtagaccttacatatggcacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_131439760_131440870
seq2: B6Ng01-163K19.b_46_1160 (reverse)

seq1  CAATTT-TGAGTAATAGTATGCAATTTTTCTTTCATGTAGGAGAATTT-G  48
      ||||||  ||||||||||| ||||   |||| |||||||||| | ||| |
seq2  CAATTTAGGAGTAATAGTAGGCAA--ATTCTCTCATGTAGGAAATTTTGG  48

seq1  GTGTCTTTGGAAAGCAGGAATTCTTTTGTGGTGATCTGATC-CAATT-CC  96
      ||||||| | ||  |||||||||||||| || ||||||||| ||||| ||
seq2  GTGTCTTAGAAAGCCAGGAATTCTTTTG-GGGGATCTGATCACAATTCCC  97

seq1  AT-GTATCCACAGACATTTGGCA-GTGGGTCAAGGGGAAGGAAACAAAGG  144
      || ||| |||||| ||||||||| ||||||||||||||||||||||||||
seq2  ATAGTA-CCACAGGCATTTGGCAGGTGGGTCAAGGGGAAGGAAACAAAGG  146

seq1  AAATAAGCATTAGCCTTAGTGTTAAAGAGCCAGCAACATTAGTAGATAGA  194
      |||||||||||||| |  ||||||||||||||||||||||||||| ||||
seq2  AAATAAGCATTAGCTTAGGTGTTAAAGAGCCAGCAACATTAGTAG-TAGA  195

seq1  CCAGATAGACCAGATAGATCAGGTAGACCAGGTAGACCAGGAAGACCAGG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATAGACCAGATAGATCAGGTAGACCAGGTAGACCAGGAAGACCAGG  245

seq1  TAGACCAGGTGGAC-AAAAGTTTGCACAGACTACAAGAGATCCTGC-AAG  292
      |||||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  TAGACCAGGTGGACAAAAAGTTTGCACAGACTACAAGAGATCCTGCAAAG  295

seq1  TACTTGATGTGGGGACAAAGACACATGAATGAGCTA-CCAGGAGAGTTTT  341
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TACTTGATGTGGGGACAAAGACACATGAATGAGCTACCCAGGAGAGTTTT  345

seq1  TTTTCTAATTTTAGGTTGTTAGAGGTTAATTAAAGTTACCATCAATTTCA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAATTTTAGGTTGTTAGAGGTTAATTAAAGTTACCATCAATTTCA  395

seq1  TAGAGTCTGCTTAATAGCTTTTATCCAGTAGTGAATGAAAATGTACCATA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCTGCTTAATAGCTTTTATCCAGTAGTGAATGAAAATGTACCATA  445

seq1  AAACTAAAATTATAGACATAGTTTTCCTGATTAGTTGATGGAACACAGAC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAAATTATAGACATAGTTTTCCTGATTAGTTGATGGAACACAGAC  495

seq1  CTTTTACTCACTGTACTGGTCTGTACAGAGAACTAGATCCCCCCAAAAGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTACTCACTGTACTGGTCTGTACAGAGAACTAGATCCCCCCAAAAGA  545

seq1  TGCTGTTCCAACAGGATCCTGGATACCTGGACAAGGACCCTCTTAGTGAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTCCAACAGGATCCTGGATACCTGGACAAGGACCCTCTTAGTGAT  595

seq1  GAGATCATCTCATTATAGAGCCAAGAAGACTTGAATTCTGCACATGATAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCATCTCATTATAGAGCCAAGAAGACTTGAATTCTGCACATGATAT  645

seq1  CAGAATCTGCCAAAAGTGCTGAGTTAGCAGGCTTAATGGAGTATATTCCA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCTGCCAAAAGTGCTGAGTTAGCAGGCTTAATGGAGTATATTCCA  695

seq1  ACTCTTTAAAGCAGAAATTGGTTCATCTCACCTCATCTCCAATTCAACTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTAAAGCAGAAATTGGTTCATCTCACCTCATCTCCAATTCAACTT  745

seq1  CTACAGAAAGGGTTCTTAGACTCCATGATTTATCTATACTTCCTCTCAAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAAAGGGTTCTTAGACTCCATGATTTATCTATACTTCCTCTCAAA  795

seq1  AGACATTTTTCATCCACCAGCCAGGGTGATGCATGCCTGAAATACAACTG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTTTCATCCACCAGCCAGGGTGATGCATGCCTGAAATACAACTG  845

seq1  AAATACAAGCAGTAGGAGTATGGAACAGAGGCAGGAGGATAGTGAGGCTA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAAGCAGTAGGAGTATGGAACAGAGGCAGGAGGATAGTGAGGCTA  895

seq1  GCCTGGTCTACATGGAGAGTTTCAGAGCTACATAGTAACACACACACACA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCTACATGGAGAGTTTCAGAGCTACATAGTAACACACACACACA  945

seq1  CACACACACACCACATAAAGGCACAAAGTAATGAACACTTTCATAGTTCT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACCACATAAAGGCACAAAGTAATGAACACTTTCATAGTTCT  995

seq1  AACAATGTGCTAATTTTACAGACTCTGCTTTACTGGTATGATGATCGTAA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGTGCTAATTTTACAGACTCTGCTTTACTGGTATGATGATCGTAA  1045

seq1  TCTTGACCCACTTCACTTCTCTTGGGTTAGCAAGTAAAAGCCATCAGAAA  1091
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCTTGACCCACTTCACTTCTCTTGGGTTAGCAAGTAAAAACCATCAGAAA  1095

seq1  TTTTATAGGTTCCTGAATTC  1111
      ||||||||||||||||||||
seq2  TTTTATAGGTTCCTGAATTC  1115

seq1: chr3_131332197_131333280
seq2: B6Ng01-163K19.g_68_1161

seq1  GAATTCCACGGGTTGAACACTAAATGTTTTATAGGACAAAGGAAATAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGGGTTGAACACTAAATGTTTTATAGGACAAAGGAAATAGAC  50

seq1  AGACACACACAATCTGATACTGCCTTGGTACTCTATCAGCAATAAATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACACACAATCTGATACTGCCTTGGTACTCTATCAGCAATAAATTTG  100

seq1  TTACTGTCTGCTAGTCTGTGGGTGCCCTAGCTATCAGAGTATAGAACCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTCTGCTAGTCTGTGGGTGCCCTAGCTATCAGAGTATAGAACCTG  150

seq1  AAAGATATGGTACGGATTGGGTTAAAGATATCACCACTGACCGACAACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATGGTACGGATTGGGTTAAAGATATCACCACTGACCGACAACCA  200

seq1  ACCAAACCAAACCAACTAAAAGCAAAAACAAACCCAAGCTTATACAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACCAAACCAACTAAAAGCAAAAACAAACCCAAGCTTATACAGAGG  250

seq1  GCTAAATATTGACCTGAGGTCTGGGAGACCTCAAATGTGAGTAGAACTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATATTGACCTGAGGTCTGGGAGACCTCAAATGTGAGTAGAACTGG  300

seq1  GGACGATAACCTTGGAAAGCATTACTTTTGAGAGAAAGAAGACAAATAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGATAACCTTGGAAAGCATTACTTTTGAGAGAAAGAAGACAAATAGA  350

seq1  AAACAAAAAGGAGGGTTGGAGAGGTGGCTCAGTGGTTAAGAGCACTAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAGGAGGGTTGGAGAGGTGGCTCAGTGGTTAAGAGCACTAGTT  400

seq1  GTTCTTCCAGAGGTCTTGAGTTCAATTTCCAGCAATCATATGGTGGCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCCAGAGGTCTTGAGTTCAATTTCCAGCAATCATATGGTGGCTCA  450

seq1  CAACCATCTATAATGACTTCTGATGCATGCAGGTATACATGAAGCTAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATCTATAATGACTTCTGATGCATGCAGGTATACATGAAGCTAGAG  500

seq1  CATTCATTTACATGAAATAAATAAATAAATAAATAATTTTAAAAACAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATTTACATGAAATAAATAAATAAATAAATAATTTTAAAAACAAAC  550

seq1  AAAAAAGATGGTACCTGTAACAGAGATAGAAAATGAGGCAGTAAAAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGATGGTACCTGTAACAGAGATAGAAAATGAGGCAGTAAAAGATG  600

seq1  GAATTAGCAATCATACAGGAGTAAAAAGAAAACTCACAATCAAAGAAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGCAATCATACAGGAGTAAAAAGAAAACTCACAATCAAAGAAGTT  650

seq1  ATCCATTCAAGAAGCTAGATGTTACTATTTTGACAGAACAAGCTGATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTCAAGAAGCTAGATGTTACTATTTTGACAGAACAAGCTGATGTT  700

seq1  AAACTGGAAATCCTAATGTCTAAAAGGAATATCAGATGACCTTCCTAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGAAATCCTAATGTCTAAAAGGAATATCAGATGACCTTCCTAAGG  750

seq1  AAGGCACTATGAGAATAAAACAGAAAGATTTTTACTGGTAAACATTTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACTATGAGAATAAAACAGAAAGATTTTTACTGGTAAACATTTCCT  800

seq1  CCAAAGAACTGGTCAGACAGCAGATTGATAGGTCATACTGAATTCAGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAACTGGTCAGACAGCAGATTGATAGGTCATACTGAATTCAGTTT  850

seq1  CACCAGGCAAGCATGGAATTTAAGGAATTCAGCTTCAGGCTGGAGGGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGCAAGCATGGAATTTAAGGAATTCAGCTTCAGGCTGGAGGGATG  900

seq1  ACTCAATGTTTACAAGAGTTTGTACCTCTATGGGACCTAGGCTGAGGTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATGTTTACAAGAGTTTGTACCTCTATGGGACCTAGGCTGAGGTCC  950

seq1  CATCACCCACATCAGGTGCCTCACAGATGCCTGTAACTTCAGTTCTAGGG  1000
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  CATCACCCACATCAGTGGCCTCACAGATGCCTGTAACTTCAGTTCTAGGG  1000

seq1  ATCT-GACACCCTTTG-CACCTGACAGGTACCTG-CACACACA-CAAACT  1046
      || | ||||||||||| ||||||||||||||||| ||||| || ||||||
seq2  ATTTGGACACCCTTTGCCACCTGACAGGTACCTGCCACACCCACCAAACT  1050

seq1  CACA-CATATG--CTTACA-CGTAGA-CATACATAT-GCACACA  1084
      |||| ||||||   ||||| |||||| | ||||||| |||||||
seq2  CACACCATATGGCTTTACACCGTAGACCTTACATATGGCACACA  1094