BAC Information

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BAC

Clone NameB6Ng01-163L10
Chromosome5 (Build37)3 (Build37)
Map Location 143,689,728 - 143,689,922118,926,031 - 118,927,185
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666727, Foxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb
Downstream geneFscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163L10.bB6Ng01-163L10.g
ACCDH956230DH956231
length5851,150
definitionDH956230|Mus musculus domesticus DNA, BAC clone: B6Ng01-163L10, 5' end.DH956231|Mus musculus domesticus DNA, BAC clone: B6Ng01-163L10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(143,689,728 - 143,689,922)(118,926,031 - 118,927,185)
sequence
gaattccattttgattaatggagatctctcctgtttggcgttggttgctg
gctttttcattatatagaaatatctaaaagcactcagttcggtctaaatt
gggctggagaagtggctcagtggttaagagcacaaactactcttgcacag
gacctaagttcagctctcagcactcatatcaggtagttcagggctacctg
taactccagctccaggatagaccgtgaacttggattcatgtgaacagaca
cactcatacacataattaaaaatataaggaatctgtgagtacatacaatt
cctctactctgtactttagggtctgggttacctcagtcaagatggtattt
tctagttccatccattttcatgagtgtctattagccaaaaattacaaaat
acccatgatacaaccctaagaagtttaacaagtaggaaggcccatgtgat
gatgcttcaatcctacctagaaggaggatcaaaatattcacaaataatca
caggagccagagggatgaagggacctaactgggggaggggagggggaagg
aaaaagagggcaggactaggtttgggagagacagg
gaattctctgtaaattctggagattgaatacggacagatattgagtaaag
agcaaaccttgactaaactgacttgacatgaataagagtttgaaagaaac
cttatctgactagtgtggtggtttgtatatgcttggtccagggagtggca
ctattaggaagtgtggccttgttggagtaggtatggccttgttggagaaa
atgtgtcactgtgtgagtggaccctccttctaaacacatgggaggcagtc
ttctcccatttgccttcggaaaaaggtgtagaactctcagttcctccatc
gctgtgctttcctggatgctgctgtgcttcttgtcttgatgataatggac
tgaacctctgaacctataagctagccccaactaaatgttgtcctttataa
gagttgccttggtcatggtgtctcttcatagcaatgcaaactctaaccaa
cacaactagcttccctttcaatgttcaggccaaaggaactcagcccttga
agccttacagggaaaaagtttgtatttatccctttcacttcaacagtgtc
tgtattacatgtcgtaattgatccagatatttgtcttcttcaccccacct
ctagagagccgttgtttgtatgctaaataaattagcatcctcttctcaac
aatgaattgtatttctaggcagaagtgtgagtatacaggattagccaatc
aataggcaaaataatgcatatacattttcttatcaaatatttctagaggt
ctgtgattttatcaaaaactaaaatgaaagaaaatgaagaaagccaggac
ttgagttgattggccagaaagcagagctaaggaatggaaaaggttgttct
aaaggatggcaggctgtagagattctactggaggatcatgatgtctttca
acccatgctggcttccagccttctttggaaagaccaaagttgtttataaa
tctagaatcctgacattgtttgtgattctattggatcatggcttctttct
taaatttaggaaattctgagctgcagtcaggtgtcgttgtgtgagatgag
caggagaaacaagatttcaagaagtacttccttcttagtaagcgagtttg
gttcaatatgccttacttgaaactctttctcaaacaaaaaaacagagagc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_143689728_143689922
seq2: B6Ng01-163L10.b_145_308

seq1  GGGCTGGAGAGGTGGCTCAGTGGTTAGGAGCACTTGCTGATCTCACAGGG  50
      |||||||||| ||||||||||||||| ||||||   ||  |||  ||  |
seq2  GGGCTGGAGAAGTGGCTCAGTGGTTAAGAGCACAAACTACTCTTGCACAG  50

seq1  GTCCTGTGTTTGACTCCCAGCACCCATGTCTGGTGGCTCCCAACTGCCTG  100
      | |||  |||   ||| |||||| ||| || ||| | ||    || ||||
seq2  GACCTAAGTTCAGCTCTCAGCACTCATATCAGGTAGTTCAGGGCTACCTG  100

seq1  TGACTCTAATTCCAGGGGATCCTATATGTCTGGCTCCCATGGGCACCAAC  150
      | |||| |  ||||||  |  |  |     ||| |  |||| |    |||
seq2  TAACTCCAGCTCCAGGATAGACCGTGAACTTGGAT-TCATGTG----AAC  145

seq1  AGTTACATGCACATACCCACCTACAAACACACACTCATACACATA  195
      ||                          |||||||||||||||||
seq2  AG--------------------------ACACACTCATACACATA  164

seq1: chr3_118926031_118927185
seq2: B6Ng01-163L10.g_68_1217

seq1  GAATTCTCTGTAAATTCTGGAGATTGAATACGGACAGATATTGAGTAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTAAATTCTGGAGATTGAATACGGACAGATATTGAGTAAAG  50

seq1  AGCAAACCTTGACTAAACTGACTTGACATGAATAAGAGTTTGAAAGAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACCTTGACTAAACTGACTTGACATGAATAAGAGTTTGAAAGAAAC  100

seq1  CTTATCTGACTAGTGTGGTGGTTTGTATATGCTTGGTCCAGGGAGTGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTGACTAGTGTGGTGGTTTGTATATGCTTGGTCCAGGGAGTGGCA  150

seq1  CTATTAGGAAGTGTGGCCTTGTTGGAGTAGGTATGGCCTTGTTGGAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGGAAGTGTGGCCTTGTTGGAGTAGGTATGGCCTTGTTGGAGAAA  200

seq1  ATGTGTCACTGTGTGAGTGGACCCTCCTTCTAAACACATGGGAGGCAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCACTGTGTGAGTGGACCCTCCTTCTAAACACATGGGAGGCAGTC  250

seq1  TTCTCCCATTTGCCTTCGGAAAAAGGTGTAGAACTCTCAGTTCCTCCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCATTTGCCTTCGGAAAAAGGTGTAGAACTCTCAGTTCCTCCATC  300

seq1  GCTGTGCTTTCCTGGATGCTGCTGTGCTTCTTGTCTTGATGATAATGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCTTTCCTGGATGCTGCTGTGCTTCTTGTCTTGATGATAATGGAC  350

seq1  TGAACCTCTGAACCTATAAGCTAGCCCCAACTAAATGTTGTCCTTTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTCTGAACCTATAAGCTAGCCCCAACTAAATGTTGTCCTTTATAA  400

seq1  GAGTTGCCTTGGTCATGGTGTCTCTTCATAGCAATGCAAACTCTAACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCCTTGGTCATGGTGTCTCTTCATAGCAATGCAAACTCTAACCAA  450

seq1  CACAACTAGCTTCCCTTTCAATGTTCAGGCCAAAGGAACTCAGCCCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTAGCTTCCCTTTCAATGTTCAGGCCAAAGGAACTCAGCCCTTGA  500

seq1  AGCCTTACAGGGAAAAAGTTTGTATTTATCCCTTTCACTTCAACAGTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTACAGGGAAAAAGTTTGTATTTATCCCTTTCACTTCAACAGTGTC  550

seq1  TGTATTACATGTCGTAATTGATCCAGATATTTGTCTTCTTCACCCCACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTACATGTCGTAATTGATCCAGATATTTGTCTTCTTCACCCCACCT  600

seq1  CTAGAGAGCCGTTGTTTGTATGCTAAATAAATTAGCATCCTCTTCTCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAGCCGTTGTTTGTATGCTAAATAAATTAGCATCCTCTTCTCAAC  650

seq1  AATGAATTGTATTTCTAGGCAGAAGTGTGAGTATACAGGATTAGCCAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTGTATTTCTAGGCAGAAGTGTGAGTATACAGGATTAGCCAATC  700

seq1  AATAGGCAAAATAATGCATATACATTTTCTTATCAAATATTTCTAGAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGCAAAATAATGCATATACATTTTCTTATCAAATATTTCTAGAGGT  750

seq1  CTGTGATTTTATCAAAAACTAAAATGAAAGAAAATGAAGAAAGCCAGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATTTTATCAAAAACTAAAATGAAAGAAAATGAAGAAAGCCAGGAC  800

seq1  TTGAGTCTGATTGGCCAGAAAGCAGAGCTAAGGAATGGAAAAGGTTGTTC  850
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGT-TGATTGGCCAGAAAGCAGAGCTAAGGAATGGAAAAGGTTGTTC  849

seq1  TAAAGGATGGCAGGCTGTAGAGATTCTACTGGAGGATCATGATGTCTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGATGGCAGGCTGTAGAGATTCTACTGGAGGATCATGATGTCTTTC  899

seq1  AACCCATGCTGGCTTCCAGCCTTCCTTTGGAAAGACCAAAGTTGTTTATA  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AACCCATGCTGGCTTCCAGCCTT-CTTTGGAAAGACCAAAGTTGTTTATA  948

seq1  AATCTAGAATCCTGACATTGTTTGTGATTCTATTGGATCATTGCCTTCTT  1000
      |||||||||||||||||||||||||||||||||||||||| || |||| |
seq2  AATCTAGAATCCTGACATTGTTTGTGATTCTATTGGATCA-TGGCTTC-T  996

seq1  TTCTTAAATTTAGGAAATTCTGAGCTGCAGTCAGGTGTCGTTTGTGTGAG  1050
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTCTTAAATTTAGGAAATTCTGAGCTGCAGTCAGGTGTCG-TTGTGTGAG  1045

seq1  ATGAGGCAGGAAGAACAAGATTTCAAG-AGTACCTTCATC-TATATAGCG  1098
      |||| ||||||  |||||||||||||| ||||| | | || ||   ||||
seq2  ATGA-GCAGGAGAAACAAGATTTCAAGAAGTACTTCCTTCTTAGTAAGCG  1094

seq1  AGTTTGAGTTCAATATGGCTTACTTGAGACCCTGTCTCAAACAAAAAACC  1148
      |||||| |||||||||| ||||||||| || || |||||||||||||| |
seq2  AGTTTG-GTTCAATATGCCTTACTTGAAACTCTTTCTCAAACAAAAAAAC  1143

seq1  AGAGAGC  1155
      |||||||
seq2  AGAGAGC  1150