BAC Information

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BAC

Clone NameB6Ng01-163L12
Chromosome3 (Build37)
Map Location 48,318,851 - 48,320,086
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039426, LOC666202, LOC666208
Downstream gene1700018B24Rik, LOC100039404, EG666230, 4932443G14, LOC545519, LOC676568, LOC666247
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163L12.bB6Ng01-163L12.g
ACCDH956234DH956235
length1,2301,215
definitionDH956234|Mus musculus domesticus DNA, BAC clone: B6Ng01-163L12, 5' end.DH956235|Mus musculus domesticus DNA, BAC clone: B6Ng01-163L12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccacttaaaaccagagacactgaaacctatagaggagaaagtagt
gaaaagcctcaagatatgggtacaggggaaaaattcctgaatagaatagc
aatggcttgtgctgtaagatcgagaatcaacaaatgggacctcataaaat
tacaaagcttctgcaaggcaaaagacaccatcaataagacaaaaaggcca
ccaacagattgggaaaggatctttacctatcctaaatcagatagaggact
aatatccaatatatataaaaaactcaagaaggtggactccagaaaatcaa
atgacccgattaaaaaatggggctcagagctaaaaaaaagaattctcacc
tgaggaataccaaatggctgagaagcacctgaaaaaaatgttcaacatcc
ttaatcatcagggaaattcaaaacaaccctgagattccacctcacaccag
tcagaatggctaagataaaaaaattcaggtgacaggagatgctggcgagg
atgtagagaaagaagaacactcctccattgttggtgggattgcaagcttg
tacaaccactctggaaatcagtctggcgcttcctcagaaaatttgacata
gcactacctgaggatcccacaatacctctcctgggcatatatccagaaga
tgttccaaccagtaagaaggacacatgctccactatgttcataacagcct
tatttataatagccagaagctggaaagaacccagatgcccctcaacagag
gaatggatacagaaaaagtggtacatttacacaatggagtactactcagc
tattaaaaagaatgaatttatgaaattcctagccaaatggatggacctgg
agggcatcatcctgagtgaggtaacacaatcacaaaggaactcacacaat
atgtactcactgataagtggatattagcccagaaacttagaatacccacg
atataagatacatttgctaaacacatgaaactcaagaatgaagagcaaag
tgtgacactttgcccctcttacactgggaacaaaacacacatgtagagtt
acagagacaatatttggagctaggagagggatggacatctagaaactgca
tatctgggatcatccatatacagctcaattgctgaccattgcatacctag
caatatttggctgaggatcgaatagccgttcccttgggaacatgccgggt
ctagccaaacacaagaatggtggagggctc
gaattcacacttcataggaaaatgttttaattcgataaatataaagcaaa
ataattgtatgaaaagtaaaaccaattttactttgaaaataggacattga
ggacctcagttttgacatacttttatggtttatttttttatcagccacaa
tgtacatttaccaagtctgtggctgattttaataaagtaaataaattatt
tttaaaaactgtataaatattttgtaattatttatagatcaaagtattta
tgaattagaccacgcttggctttcactgttatatttataatagttatatt
tcatgctaatatatatgatttcattaacactgtgaagttgaaccaaagct
gcacttctgtatttttatttttattatttttttaacagtaaacatttaag
tcaaaatgagaaccatcacattaaagcaaattcataccatgaagtcccct
tgcacaaacaattttcttagttattccttcattcaggatttactcagttg
gccaggacattaaaacacaacaatgtgacaactgttgccttttaataagt
cccagaaagaaatgcagtatgcattcaagtaatgcaatcactgtgggcca
cattcatctgatgttgttttaaatgaaagagtaaacattacattaattat
atttgtttattttaagaagagaaacctttgggcagaattacaaattaagg
tattgttttctttggaaggacattcattccttgaggcttatcgacacagg
ctaatttagttttaatgcagtgcgttgtgcactggaaatcacataccttg
tttctgcatcatgttctgcagggctttacctcgtgagattaagaaatcaa
tgtgtataccaggtactcagctagtccctccctttgagtccactaaagct
taacacatctgtacttagtgaagcctgctgagaagagagagcagttactt
ttgcttcaaagcattgcaagcatcttctgaaacagccttcctagggcata
ttaggacattcttactcttctgccaacactgctttaaatgcttgaagtgg
tgtaattttttcttctgaccaccgtgggtcctgaataacaaagttactgg
gggtgccccatggttctctctcaagccctgagttaattacattggaaagt
ggtaaactatgctctctgtcattaagaagggttccaggaagtgaaagata
aacctccctcctgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_48318851_48320086
seq2: B6Ng01-163L12.g_70_1284 (reverse)

seq1  TACAGGAGGTGATGTTTATCTTTTCTACTTCCTGTGACACCTCCTAATGG  50
      ||||||||| || ||||||||||   ||||||||  || | || ||||  
seq2  TACAGGAGG-GAGGTTTATCTTT--CACTTCCTGGAACCCTTCTTAAT--  45

seq1  GACAGAGAGCATAGTTCTACCAACTTCTCAATTGGTATTTAACTCA-GGC  99
      |||||||||||||||| |||| ||||  ||||  ||| |||||||| |||
seq2  GACAGAGAGCATAGTT-TACC-ACTTTCCAAT--GTAATTAACTCAGGGC  91

seq1  TTGAAGAGAAAACACTGGGGCACCCCCAGTAACCTTTGTTCATCCAGGAC  149
      ||| ||||| |||  ||||||||||||||||| ||||||| || ||||||
seq2  TTG-AGAGAGAACCATGGGGCACCCCCAGTAA-CTTTGTT-ATTCAGGAC  138

seq1  CCACGGTGGTCAGAAAGAAATAATTACAACCACTTCAAAGCAATTAAAAA  199
      ||||||||||||| |||||| |||||| |||||||| ||||| ||  |||
seq2  CCACGGTGGTCAG-AAGAAAAAATTAC-ACCACTTC-AAGCATTT--AAA  183

seq1  GCAGTTGTGTGCAG-AGAGTAAGAATGGTCCTAATTATGCCCTAGGGAAG  248
      |||| |||  |||| ||||||||||| ||||||| ||||||||| |||||
seq2  GCAG-TGTTGGCAGAAGAGTAAGAAT-GTCCTAA-TATGCCCTA-GGAAG  229

seq1  GCTGTTTCAGAAGGATGCTTGCAATTGCTTTGAAGCAAAAGTAACTGCTC  298
      |||||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  GCTGTTTCAGAA-GATGCTTGCAA-TGCTTTGAAGCAAAAGTAACTGCTC  277

seq1  TCTCCTTCTCAGCAGGCTTCACTAAGTACAGATGTG-TAAGCTTTAGTGG  347
      ||| |||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCT-CTTCTCAGCAGGCTTCACTAAGTACAGATGTGTTAAGCTTTAGTGG  326

seq1  ACTC-AAGGGAGGGACTAAGCTGAGTACCTGGTATACACATTGATTTCTT  396
      |||| |||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACTCAAAGGGAGGGACT-AGCTGAGTACCTGGTATACACATTGATTTCTT  375

seq1  AATCTCACGAGGTAAAGCCCTGCAGAACATGATGCAGAAACAAGGTATGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCACGAGGTAAAGCCCTGCAGAACATGATGCAGAAACAAGGTATGT  425

seq1  GATTTCCAGTGCACAACGCACTGCATTAAAACTAAATTAGCCTGTGTCGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCAGTGCACAACGCACTGCATTAAAACTAAATTAGCCTGTGTCGA  475

seq1  TAAGCCTCAAGGAATGAATGTCCTTCCAAAGAAAACAATACCTTAATTTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTCAAGGAATGAATGTCCTTCCAAAGAAAACAATACCTTAATTTG  525

seq1  TAATTCTGCCCAAAGGTTTCTCTTCTTAAAATAAACAAATATAATTAATG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTGCCCAAAGGTTTCTCTTCTTAAAATAAACAAATATAATTAATG  575

seq1  TAATGTTTACTCTTTCATTTAAAACAACATCAGATGAATGTGGCCCACAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTACTCTTTCATTTAAAACAACATCAGATGAATGTGGCCCACAG  625

seq1  TGATTGCATTACTTGAATGCATACTGCATTTCTTTCTGGGACTTATTAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCATTACTTGAATGCATACTGCATTTCTTTCTGGGACTTATTAAA  675

seq1  AGGCAACAGTTGTCACATTGTTGTGTTTTAATGTCCTGGCCAACTGAGTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACAGTTGTCACATTGTTGTGTTTTAATGTCCTGGCCAACTGAGTA  725

seq1  AATCCTGAATGAAGGAATAACTAAGAAAATTGTTTGTGCAAGGGGACTTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGAATGAAGGAATAACTAAGAAAATTGTTTGTGCAAGGGGACTTC  775

seq1  ATGGTATGAATTTGCTTTAATGTGATGGTTCTCATTTTGACTTAAATGTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTATGAATTTGCTTTAATGTGATGGTTCTCATTTTGACTTAAATGTT  825

seq1  TACTGTTAAAAAAATAATAAAAATAAAAATACAGAAGTGCAGCTTTGGTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTAAAAAAATAATAAAAATAAAAATACAGAAGTGCAGCTTTGGTT  875

seq1  CAACTTCACAGTGTTAATGAAATCATATATATTAGCATGAAATATAACTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCACAGTGTTAATGAAATCATATATATTAGCATGAAATATAACTA  925

seq1  TTATAAATATAACAGTGAAAGCCAAGCGTGGTCTAATTCATAAATACTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATATAACAGTGAAAGCCAAGCGTGGTCTAATTCATAAATACTTT  975

seq1  GATCTATAAATAATTACAAAATATTTATACAGTTTTTAAAAATAATTTAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTATAAATAATTACAAAATATTTATACAGTTTTTAAAAATAATTTAT  1025

seq1  TTACTTTATTAAAATCAGCCACAGACTTGGTAAATGTACATTGTGGCTGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTATTAAAATCAGCCACAGACTTGGTAAATGTACATTGTGGCTGA  1075

seq1  TAAAAAAATAAACCATAAAAGTATGTCAAAACTGAGGTCCTCAATGTCCT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAATAAACCATAAAAGTATGTCAAAACTGAGGTCCTCAATGTCCT  1125

seq1  ATTTTCAAAGTAAAATTGGTTTTACTTTTCATACAATTATTTTGCTTTAT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAAAGTAAAATTGGTTTTACTTTTCATACAATTATTTTGCTTTAT  1175

seq1  ATTTATCGAATTAAAACATTTTCCTATGAAGTGTGAATTC  1236
      ||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCGAATTAAAACATTTTCCTATGAAGTGTGAATTC  1215