BAC Information

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BAC

Clone NameB6Ng01-163M22
Chromosome3 (Build37)
Map Location 33,970,621 - 34,083,472
singlet/doubletdoublet
Overlap geneDnajc19, LOC435727
Upstream genePex2, EG545512, LOC100041058, Ttc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h
Downstream geneEG665636, EG622074, Sox2, LOC100041108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-163M22.bB6Ng01-163M22.g
ACCDH956300DH956301
length1,2101,118
definitionDH956300|Mus musculus domesticus DNA, BAC clone: B6Ng01-163M22, 5' end.DH956301|Mus musculus domesticus DNA, BAC clone: B6Ng01-163M22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,082,255 - 34,083,472)(33,970,621 - 33,971,758)
sequence
gaattctataaactactacacaggggcctagcacccgccagcagagccaa
gagaactggagggcttttcttctttcccacagagcatggtggtggtgttg
aatccacaaatttttgagacaagaaaggataaaaaatgaatttagaacag
aaatgtggagattcttttcttgttgtattttgctcaagataccccccccc
caaattaatcgagaaccatgatgttgagtcctcaaaagagggcgactgag
cacagagggacagggaggaaaggactgcaacttgctcccagggactggag
aaagtcaaaaactaaaaagaaaataaaaaaggttggaatccaccaatcgt
ctgtgctaatcctcctccccttcctcctcctctctctcctcctcctctcc
ttcctccccttcctcctcaccaacatcttcaccttcatcctcaactcctt
cttcatcaatatcttctaacccctcctcctctttgtcgtcaccatcatca
tcttctgcctctcctcttcatcatccatgtcaggaaccaaatactactac
aagggatttggccagatgtcacctttgatgacctctcctgactcgtcagc
acctgcgacagaatggtcagtaaaccaggtaaagaagctctctggctctc
cgtgccgcctcttcctgctggccttattctgcgtttgacttgagcatttt
gtcaaatcctttccagacttccatttgatttcggtggactttgaagacgg
gtcaccactctcattcagatgaaattctttgggaagaactttattttcaa
agtaaggattttcatcaaaataaaaaaatctattctgtaacctgatttaa
tgtcttcaaattctgtcacttcaactctggtcattaatgcagagcctcct
cgccctcttccccaagcagtgtagacacttgtggatggttgaaaatgttg
ttaccaaaatttggggattttggcgatcaatttctgaccttcttctggaa
aaaaaaaatacttgggcagagtttgttatatttttgttctactttcaaat
ttccctccacgggccttgtcattaagtcttgtctatttcatttttgtact
ttcaccaaatacatcaatggctcttgcttttctttttcctccttcagcag
gcagatagagcgacagttctcgcttgcgcgacaaccggttggtcctgggc
tgagcaggaa
gaattcagcagcatgtcactccagtgggttcttagtgatttactttaggt
gctgtggagtcaaagcaagggagcttgctgaaatgagttacttttaagaa
gtgcagatgatgacactgggcttttaaagcagaagaactcaagcttatca
ggcactgagtgagaggggagaagcactaggtggtttactcttctgcatcc
ttccatcacccataagccaaaacagcagctacagctgactgccacttgac
ttggccattatatagcctgaggaaagtctggaaaagttggtatgtcctct
gcagacattccaattttgttgtggctcagaaatcctaattagcattccta
aagacttggtgtgtgtgctaaggaaaagtaaataggagactggctatgtg
ggaaggcacaagtgatgtctttaaaggaggattacatttttttattactt
ggagctttgtagaatttgaaaaggataggatgcttattttaaaatctcat
ccagtcttaatgtgctttttttttttttttttttttatggcttggagtcc
cccacaccaatttcattacctgctaacaggtttgtttaatcagggtgttg
ctcctaacctgtttaatacatggcaagagtttgcattaatctgttgaaat
caattccagtttgatataggcagtctttgagtaagtggtgttaacttgaa
agtatgtacttactattggttgaaacatgcctgttaaacttaattgttat
ttattctaaattattactcttcgggttcaacaatggtcaactactgacag
tttctgtcaaattaattatacattttaaataaaaacactaggaattcggg
aaggagttggtgttagccgtcaagctggatgatggaggtacatgtgaatt
gtacaaatgccattttaaaatactactcattttggtgatgttaggggttg
aggccaggcccttgtgcatgaaagctttgacatagctttaactcccagta
cctttctgctcagtcttctgcattcgagctttcatgcccacctgctgcac
acgaatcgactaaaggcccacgggcttgacttttttttcaagaatattat
taatatggagtacactgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_34082255_34083472
seq2: B6Ng01-163M22.b_47_1256 (reverse)

seq1  TTCCTGCCTCAGCCCAAGAAACCCAGACCGGCTGCTGCCGCAAAGCTGAA  50
      |||||| ||||||||| ||   ||| ||||| || |  ||| ||||   |
seq2  TTCCTG-CTCAGCCCAGGA---CCA-ACCGGTTG-TCGCGC-AAGC--GA  41

seq1  GAACAAGTCGGCCTCTCCTGGCCTGCTGAAGAGAGAAAAAGAACAGCAAG  100
      ||||  ||||  ||||    |||||||||||   ||||||||| ||||||
seq2  GAAC-TGTCG--CTCTATCTGCCTGCTGAAGGAGGAAAAAGAAAAGCAAG  88

seq1  AAGCAATTGAATGTA-TTGGTG-AAGTAC-AAAATGAAATAGAC-AGACT  146
       ||| |||| ||||| |||||| |||||| |||||||||||||| |||||
seq2  -AGCCATTG-ATGTATTTGGTGAAAGTACAAAAATGAAATAGACAAGACT  136

seq1  TAATGAACAAGCCCGT-GAGGGAATTTTGAAAGTAGAACAAAAATATAAC  195
      ||||||  | |||||| ||||||| |||||||||||||||||||||||||
seq2  TAATGACAAGGCCCGTGGAGGGAAATTTGAAAGTAGAACAAAAATATAAC  186

seq1  AAACTCTG-CCAAGTATTTTTTTTTTTCCAGAAG-AGGTCAG-AATTGAT  242
      |||||||| ||||||| ||||||||||||||||| ||||||| |||||||
seq2  AAACTCTGCCCAAGTA-TTTTTTTTTTCCAGAAGAAGGTCAGAAATTGAT  235

seq1  CGCCAAAATCCCAAATTTTTGGGTAACAACATTTTCAACCATCCACAAGT  292
      |||||||||||| || |||| |||||||||||||||||||||||||||||
seq2  CGCCAAAATCCCCAAATTTT-GGTAACAACATTTTCAACCATCCACAAGT  284

seq1  GTCTACACTGCTTGGGGAAGAGGGCGAGGAGGCTCTGCATTAATGACCAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACACTGCTTGGGGAAGAGGGCGAGGAGGCTCTGCATTAATGACCAG  334

seq1  AGTTGAAGTGACAGAATTTGAAGACATTAAATCAGGTTACAGAATAGATT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAGTGACAGAATTTGAAGACATTAAATCAGGTTACAGAATAGATT  384

seq1  TTTTTATTTTGATGAAAATCCTTACTTTGAAAATAAAGTTCTTCCCAAAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTTGATGAAAATCCTTACTTTGAAAATAAAGTTCTTCCCAAAG  434

seq1  AATTTCATCTGAATGAGAGTGGTGACCCGTCTTCAAAGTCCACCGAAATC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCATCTGAATGAGAGTGGTGACCCGTCTTCAAAGTCCACCGAAATC  484

seq1  AAATGGAAGTCTGGAAAGGATTTGACAAAATGCTCAAGTCAAACGCAGAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAAGTCTGGAAAGGATTTGACAAAATGCTCAAGTCAAACGCAGAA  534

seq1  TAAGGCCAGCAGGAAGAGGCGGCACGGAGAGCCAGAGAGCTTCTTTACCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCCAGCAGGAAGAGGCGGCACGGAGAGCCAGAGAGCTTCTTTACCT  584

seq1  GGTTTACTGACCATTCTGTCGCAGGTGCTGACGAGTCAGGAGAGGTCATC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTACTGACCATTCTGTCGCAGGTGCTGACGAGTCAGGAGAGGTCATC  634

seq1  AAAGGTGACATCTGGCCAAATCCCTTGTAGTAGTATTTGGTTCCTGACAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGACATCTGGCCAAATCCCTTGTAGTAGTATTTGGTTCCTGACAT  684

seq1  GGATGATGAAGAGGAGAGGCAGAAGATGATGATGGTGACGACAAAGAGGA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATGAAGAGGAGAGGCAGAAGATGATGATGGTGACGACAAAGAGGA  734

seq1  GGAGGGGTTAGAAGATATTGATGAAGAAGGAGTTGAGGATGAAGGTGAAG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGTTAGAAGATATTGATGAAGAAGGAGTTGAGGATGAAGGTGAAG  784

seq1  ATGTTGGTGAGGAGGAAGGGGAGGAAGGAGAGGAGGAGGAGAGAGAGGAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGTGAGGAGGAAGGGGAGGAAGGAGAGGAGGAGGAGAGAGAGGAG  834

seq1  GAGGAAGGGGAGGAGGATTAGCACAGACGATTGGTGGATTCCAACCTTTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGGGGAGGAGGATTAGCACAGACGATTGGTGGATTCCAACCTTTT  884

seq1  TTATTTTCTTTTTAGTTTTTGACTTTCTCCAGTCCCTGGGAGCAAGTTGC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCTTTTTAGTTTTTGACTTTCTCCAGTCCCTGGGAGCAAGTTGC  934

seq1  AGTCCTTTCCTCCCTGTCCCTCTGTGCTCAGTCGCCCTCTTTTGAGGACT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTTCCTCCCTGTCCCTCTGTGCTCAGTCGCCCTCTTTTGAGGACT  984

seq1  CAACATCATGGTTCTCGATTAATTTGGGGGGGGGGTATCTTGAGCAAAAT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCATGGTTCTCGATTAATTTGGGGGGGGGGTATCTTGAGCAAAAT  1034

seq1  ACAACAAGAAAAGAATCTCCACATTTCTGTTCTAAATTCATTTTTTATCC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAGAAAAGAATCTCCACATTTCTGTTCTAAATTCATTTTTTATCC  1084

seq1  TTTCTTGTCTCAAAAATTTGTGGATTCAACACCACCACCATGCTCTGTGG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTCTCAAAAATTTGTGGATTCAACACCACCACCATGCTCTGTGG  1134

seq1  GAAAGAAGAAAAGCCCTCCAGTTCTCTTGGCTCTGCTGGCGGGTGCTAGG  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGAAAAGCCCTCCAGTTCTCTTGGCTCTGCTGGCGGGTGCTAGG  1184

seq1  CCCCTGTGTAGTAGTTTATAGAATTC  1218
      ||||||||||||||||||||||||||
seq2  CCCCTGTGTAGTAGTTTATAGAATTC  1210

seq1: chr3_33970621_33971758
seq2: B6Ng01-163M22.g_69_1186

seq1  GAATTCAGCAGCATGTCACTCCAGTGGGTTCTTAGTGATTTACTTTAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGCATGTCACTCCAGTGGGTTCTTAGTGATTTACTTTAGGT  50

seq1  GCTGTGGAGTCAAAGCAAGGGAGCTTGCTGAAATGAGTTACTTTTAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGAGTCAAAGCAAGGGAGCTTGCTGAAATGAGTTACTTTTAAGAA  100

seq1  GTGCAGATGATGACACTGGGCTTTTAAAGCAGAAGAACTCAAGCTTATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGATGATGACACTGGGCTTTTAAAGCAGAAGAACTCAAGCTTATCA  150

seq1  GGCACTGAGTGAGAGGGGAGAAGCACTAGGTGGTTTACTCTTCTGCATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGAGTGAGAGGGGAGAAGCACTAGGTGGTTTACTCTTCTGCATCC  200

seq1  TTCCATCACCCATAAGCCAAAACAGCAGCTACAGCTGACTGCCACTTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCACCCATAAGCCAAAACAGCAGCTACAGCTGACTGCCACTTGAC  250

seq1  TTGGCCATTATATAGCCTGAGGAAAGTCTGGAAAAGTTGGTATGTCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCATTATATAGCCTGAGGAAAGTCTGGAAAAGTTGGTATGTCCTCT  300

seq1  GCAGACATTCCAATTTTGTTGTGGCTCAGAAATCCTAATTAGCATTCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACATTCCAATTTTGTTGTGGCTCAGAAATCCTAATTAGCATTCCTA  350

seq1  AAGACTTGGTGTGTGTGCTAAGGAAAAGTAAATAGGAGACTGGCTATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTGGTGTGTGTGCTAAGGAAAAGTAAATAGGAGACTGGCTATGTG  400

seq1  GGAAGGCACAAGTGATGTCTTTAAAGGAGGATTACATTTTTTTATTACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCACAAGTGATGTCTTTAAAGGAGGATTACATTTTTTTATTACTT  450

seq1  GGAGCTTTGTAGAATTTGAAAAGGATAGGATGCTTATTTTAAAATCTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTTGTAGAATTTGAAAAGGATAGGATGCTTATTTTAAAATCTCAT  500

seq1  CCAGTCTTAATGTGCTTTTTTTTTTTTTTTTTTTTTATGGCTTGGAGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTTAATGTGCTTTTTTTTTTTTTTTTTTTTTATGGCTTGGAGTCC  550

seq1  CCCACACCAATTTCATTACCTGCTAACAGGTTTGTTTAATCAGGGTGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACCAATTTCATTACCTGCTAACAGGTTTGTTTAATCAGGGTGTTG  600

seq1  CTCCTAACCTGTTTAATACATGGCAAGAGTTTGCATTAATCTGTTGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAACCTGTTTAATACATGGCAAGAGTTTGCATTAATCTGTTGAAAT  650

seq1  CAATTCCAGTTTGATATAGGCAGTCTTTGAGTAAGTGGTGTTAACTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCAGTTTGATATAGGCAGTCTTTGAGTAAGTGGTGTTAACTTGAA  700

seq1  AGTATGTACTTACTATTGGTTGAAACATGCCTGTTAAACTTAATTGTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTACTTACTATTGGTTGAAACATGCCTGTTAAACTTAATTGTTAT  750

seq1  TTATTCTAAATTATTACTCTTCGGGTTCAACAATGGTCAACTACTGACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTAAATTATTACTCTTCGGGTTCAACAATGGTCAACTACTGACAG  800

seq1  TTTCTGTCAAATTAATTATACATTTTAAATAAAAACACTAGGAATTCGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCAAATTAATTATACATTTTAAATAAAAACACTAGGAATTCGGG  850

seq1  AAGGAGTTGGTGTTAGCCGTCAAAGCTGGATGATGGAGGTACATGTGAAT  900
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAGGAGTTGGTGTTAGCCGTC-AAGCTGGATGATGGAGGTACATGTGAAT  899

seq1  TGTAACAAAATGCCATTTTAAAATACTACTCATTTTTGGTGATGTTAGGG  950
      ||||   ||||||||||||||||||||||||| |||||||||||||||||
seq2  TGTA--CAAATGCCATTTTAAAATACTACTCA-TTTTGGTGATGTTAGGG  946

seq1  GTTGAGGCCAGGGCCCTGTGCATGAAAGGCTTTGACATAGCTTTAAACTC  1000
      |||||||||||| || ||||||||||| |||||||||||||||| |||||
seq2  GTTGAGGCCAGGCCCTTGTGCATGAAA-GCTTTGACATAGCTTT-AACTC  994

seq1  CCAGTAACCTTCCTGCCTCAGGTCTTCGTGCA-TCGAGCTACCATGCCCA  1049
      ||||| ||||| ||| |||| |||||| |||| |||||||  ||||||||
seq2  CCAGT-ACCTTTCTG-CTCA-GTCTTC-TGCATTCGAGCTTTCATGCCCA  1040

seq1  CCTGGCTGCAC-CG-ATCGACTTAGATGCTCACTGGCTTTGACTTTTTTT  1097
      ||| ||||||| || |||||| || | || ||| ||| |||||    |||
seq2  CCT-GCTGCACACGAATCGAC-TAAAGGCCCACGGGC-TTGAC----TTT  1083

seq1  TTTTTTAAGATTTATTTATTTATTATATGTAAGTACACTGT  1138
      ||||| ||||      ||||  | |||||  ||||||||||
seq2  TTTTTCAAGA-----ATATTATTAATATG-GAGTACACTGT  1118