BAC Information

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BAC

Clone NameB6Ng01-164B21
Chromosome3 (Build37)
Map Location 109,897,011 - 109,898,142
singlet/doubletsinglet
Overlap geneNtng1
Upstream gene4930443G12Rik, Slc25a24, Vav3
Downstream geneLOC100043181, LOC100043183, Prmt6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164B21.bB6Ng01-164B21.g
ACCDH956531DH956532
length1,2021,135
definitionDH956531|Mus musculus domesticus DNA, BAC clone: B6Ng01-164B21, 5' end.DH956532|Mus musculus domesticus DNA, BAC clone: B6Ng01-164B21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaatatcaaagtaaatggtgagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctctatatctattcaacattg
tacttgaagtcctagccagagcaattcgacaacaaaaggagatcaagggg
atataaattagaaaaaaagaaatcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaaacc
tgataaacagcttcgggtgaagtgggtggatataaaattaactcaaacaa
gtcaatggcctttctctacacaaagaataaacaggctgagaaataaatta
gggaaacaatacccttctcaatagtcacaaataatataaaatatcttggc
atgactctaactaaggaagtgaaagatctgtatgataagaacacaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattagaaagggcaatctgcaaattcatctggaataacaaaaaacc
taggatagcaaaaagtcttctcaaggataaaagaacttctggtggaatca
ccatgcctgacctaaagctgtactacagagcaattgtgataaaaactgca
tggtactggtatagcgacagacaagtagaccaatggaatagattgaagac
ccagaaatgaacccacacacctatggtcacttgatctttgataagggaga
taaaaccatccactggaaaaaggacatcattttcaacaatggtgctggca
caactggtggtatcatgtagagatacaaattgatccatcctatctcctgt
actagtcaatctagtggatcagagtccacataaaacagagacactgaaac
ttatagagagaagtgggaaaaggctgaagatttgccgaagggaaatctga
atagaagcattgcttgggcttaactggatggcaatggaaccttactgcag
ctcgtaggcagaaccgtccatagagaaatgcactccacacagaatgtggg
ga
gaattctctggcgctttttcacctaaggaagaaaaccagaatgagatgca
aatcagtgctcttatctaatgaataatgcaaatgagtgttctgcatatag
caagtcagtctgcagaaattcttctgcctcacctcacatttcttaggggt
ttaagcactgtgtgtcataagaaattagaggaaggattgccaagtaatgg
cagagtcttggagccccaagttagtctagacaataaagaattaggctgca
ctggacagcaaagaggaagctgataaaacaaagatattgccatttttgct
ttgcctatttaatggacttatatggcactttaatcggtaattctttgtgt
ggttagtacttaaagagactcagtgatacctgttggcaaggtttgaaact
agttatgaaaactcagctttctcccaacccctagtgcatggaaaaagagt
gttactgagagtgttttctttctttttcaaacaccctaacacttaagatt
tttttttggtagcatgacagaatccacttaaaactgcactttatgcaact
ttctagctccatgaagggtactcgattcttcaaacaatagttgcaaacaa
acacttctttatgaaacacataatcaattgatattaaccatggtgtgccc
agagttacttctcagtcatgggttagtccactgaaaagtatttcttattt
agaattcattgccattgtgtctgattctgtttaaaaaacaaaacaaaaca
aaacaaaagcagctttgaatacagaattatttttcttgtgtataaaaact
gctcgtgctttttctttctcattgttgatgctaaacacgtttctcttcca
ctcccatctgaatgagtgcccaactaaccttatgatagtgtgacagactc
tgttttcaccaaatatttagcagattcccttacttctctcaatgctgtga
ataactacctaacaaaaacaacttcaaagggaaaaatggctcccaggttc
aagggtggagcacatcatggtgggattgccaggcacatagcctggagaag
ctcatcatttgcatcttccagtcagaagcgagcgaaggataatactaggc
actctcagctccacccttctcctaattaactcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_109897011_109898142
seq2: B6Ng01-164B21.g_66_1200

seq1  GAATTCTCTGGCGCTTTTTCACCTAAGGAAGAAAACCAGAATGAGATGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGCGCTTTTTCACCTAAGGAAGAAAACCAGAATGAGATGCA  50

seq1  AATCAGTGCTCTTATCTAATGAATAATGCAAATGAGTGTTCTGCATATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGTGCTCTTATCTAATGAATAATGCAAATGAGTGTTCTGCATATAG  100

seq1  CAAGTCAGTCTGCAGAAATTCTTCTGCCTCACCTCACATTTCTTAGGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAGTCTGCAGAAATTCTTCTGCCTCACCTCACATTTCTTAGGGGT  150

seq1  TTAAGCACTGTGTGTCATAAGAAATTAGAGGAAGGATTGCCAAGTAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCACTGTGTGTCATAAGAAATTAGAGGAAGGATTGCCAAGTAATGG  200

seq1  CAGAGTCTTGGAGCCCCAAGTTAGTCTAGACAATAAAGAATTAGGCTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCTTGGAGCCCCAAGTTAGTCTAGACAATAAAGAATTAGGCTGCA  250

seq1  CTGGACAGCAAAGAGGAAGCTGATAAAACAAAGATATTGCCATTTTTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACAGCAAAGAGGAAGCTGATAAAACAAAGATATTGCCATTTTTGCT  300

seq1  TTGCCTATTTAATGGACTTATATGGCACTTTAATCGGTAATTCTTTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTATTTAATGGACTTATATGGCACTTTAATCGGTAATTCTTTGTGT  350

seq1  GGTTAGTACTTAAAGAGACTCAGTGATACCTGTTGGCAAGGTTTGAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTACTTAAAGAGACTCAGTGATACCTGTTGGCAAGGTTTGAAACT  400

seq1  AGTTATGAAAACTCAGCTTTCTCCCAACCCCTAGTGCATGGAAAAAGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGAAAACTCAGCTTTCTCCCAACCCCTAGTGCATGGAAAAAGAGT  450

seq1  GTTACTGAGAGTGTTTTCTTTCTTTTTCAAACACCCTAACACTTAAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTGAGAGTGTTTTCTTTCTTTTTCAAACACCCTAACACTTAAGATT  500

seq1  TTTTTTTGGTAGCATGACAGAATCCACTTAAAACTGCACTTTATGCAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGGTAGCATGACAGAATCCACTTAAAACTGCACTTTATGCAACT  550

seq1  TTCTAGCTCCATGAAGGGTACTCGATTCTTCAAACAATAGTTGCAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCTCCATGAAGGGTACTCGATTCTTCAAACAATAGTTGCAAACAA  600

seq1  ACACTTCTTTATGAAACACATAATCAATTGATATTAACCATGGTGTGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCTTTATGAAACACATAATCAATTGATATTAACCATGGTGTGCCC  650

seq1  AGAGTTACTTCTCAGTCATGGGTTAGTCCACTGAAAAGTATTTCTTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTACTTCTCAGTCATGGGTTAGTCCACTGAAAAGTATTTCTTATTT  700

seq1  AGAATTCATTGCCATTGTGTCTGATTCTGTTTAAAAAACAAAACAAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCATTGCCATTGTGTCTGATTCTGTTTAAAAAACAAAACAAAACA  750

seq1  AAACAAAAGCAGCTTTGAATACAGAATTATTTTTCTTGTGTATAAAAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAGCAGCTTTGAATACAGAATTATTTTTCTTGTGTATAAAAACT  800

seq1  GCTCGTGCTTTTTCTTTCTCATTGTTGATGCTAAACACGTTTCTCTTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGTGCTTTTTCTTTCTCATTGTTGATGCTAAACACGTTTCTCTTCCA  850

seq1  CTCCCATCTGAATGAGTGCCCAACTAACCTTATGATAGTGTGACAGACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATCTGAATGAGTGCCCAACTAACCTTATGATAGTGTGACAGACTC  900

seq1  TGTTTTTCACCAAATATTTAGCAGATT-CCTTACTTCTCTCAATGCTGTG  949
      || |||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TG-TTTTCACCAAATATTTAGCAGATTCCCTTACTTCTCTCAATGCTGTG  949

seq1  AATAACTACCTAAC-AAAACAAC-TCAAAGGGAAAAAAATGGCTCCCA-G  996
      |||||||||||||| |||||||| ||||||||  |||||||||||||| |
seq2  AATAACTACCTAACAAAAACAACTTCAAAGGG--AAAAATGGCTCCCAGG  997

seq1  TTCAAGGGTGGAGCACATCATGGTGGGAATGGCAAGGCAACATAAGCCTG  1046
      ||||||||||||||||||||||||||| || || |||| |||| ||||||
seq2  TTCAAGGGTGGAGCACATCATGGTGGG-ATTGCCAGGC-ACAT-AGCCTG  1044

seq1  AGAAAGCTCATCATGTTGCATCTT-CAGTCAGAAAGCAGCGAAGGATAAA  1095
         ||||||||||| ||||||||| |||||||||   |||||||||| ||
seq2  GAGAAGCTCATCAT-TTGCATCTTCCAGTCAGAAGCGAGCGAAGGAT-AA  1092

seq1  TACTAG---CACTCAGCTC--ACTTTCTCCT-ATTTACTCAGT  1132
      ||||||   | ||||||||   | ||||||| ||| |||||||
seq2  TACTAGGCACTCTCAGCTCCACCCTTCTCCTAATTAACTCAGT  1135