BAC Information

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BAC

Clone NameB6Ng01-164F09
Chromosome3 (Build37)
Map Location 87,832,169 - 87,832,806
singlet/doubletsinglet
Overlap genenone
Upstream geneKirrel1, LOC100042355, Msr2, Cd5l, Fcrl1, Fcrl5, Etv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2
Downstream geneGpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164F09.bB6Ng01-164F09.g
ACCDH956689DH956690
length840781
definitionDH956689|Mus musculus domesticus DNA, BAC clone: B6Ng01-164F09, 5' end.DH956690|Mus musculus domesticus DNA, BAC clone: B6Ng01-164F09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tctgtgaatccatctggccttggattctttatttagctcctcttgtctct
ctaacttctggagccattctttctgatcctttaatacaggcatcttatag
attccccctgtagggctgctttccatgtgtgccagaggtgtccttggttt
agttacagggagattgattgattgattgatttcttcattaactccagtga
tgagttgttaaatctccatgagtttgcatattgactagaaatttttggtg
tcaatttcaagttttattgcattgtgttctgataggatataaggagttat
ttccatcttcctgaatatataaagacctgttttgtgtcccagatatggtc
tactttagaaaagtttccatgcctggctgagtggaatgttctgtagatgt
ctgttaagtccattagatgtatgatgtcaatgaattgtgtttctgtttat
tttttgtccagatgacacaagaagggtactgaaatcagctattaatggat
tgaagataatttgtctttaaatacagtagtagacttttaaaaatgaaatt
gggcaccgcagagctgggtttagaatagtgacatctctttggttaattgt
ccctttggttaggatgaagtgtcccccttatctcttttgacttgttttag
tttgaggtgttttgtcagttattaggatattgatacctgcttcttcctgg
ttctgtttgatggagtactttgtccacccttttagcagtgcctatcttta
cagctaagatgcatttcttggcagtaacagatagatggatttggggagtt
ttgtttgattattttaaatttatttattttatttatagag
gaattcaatcaccagactcacagtggaaggagaagatggacccccaaaag
tcgtcctctgacctccacactgaaactcaacctacagtccctcacataca
acaataacattttaaaattctggagaggccacagatgtggaccaccactt
gaaatgctgaaacaggaggagtgtcatgagtttgagtctgccttgggctt
cggagttgaaacctttctcaaaaaagaaagaaaagaaaaagaaaaaaaaa
aagaaaaacagggccagagaagttaagagcgctggctgttttccagagga
tctgacttcaattcccagcacacacacagcagctcacggctgtaactcta
gtcccgagggatctgatgccctcttctggccacaggaggcatcaggaaca
cacatgatgcacaggcacacactcaggaaaacatccacacatatgaaata
ataagaatataaagctgggcagtggtggcgcatgcctttaattccagcac
ttggaaggcagaggcaggtggatttctgagtctgaggccagcctggtcta
caaagtgagttccaggacagccagggctatacagagaaaccctgtttcga
aaaaccaaaaccaaaacaaaacaaaacaaaagaatataaaaataaggggc
tggagagatggctcagcagttaagagcactgactgctcttctagaggttc
tgagttcaaatcccagcaaccacatggtggctcacaaccatctgtaatga
aatctgatgccctcttcggggtgtctgaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_87832169_87832806
seq2: B6Ng01-164F09.g_66_703

seq1  GAATTCAATCACCAGACTCACAGTGGAAGGAGAAGATGGACCCCCAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCACCAGACTCACAGTGGAAGGAGAAGATGGACCCCCAAAAG  50

seq1  TCGTCCTCTGACCTCCACACTGAAACTCAACCTACAGTCCCTCACATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCCTCTGACCTCCACACTGAAACTCAACCTACAGTCCCTCACATACA  100

seq1  ACAATAACATTTTAAAATTCTGGAGAGGCCACAGATGTGGACCACCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAACATTTTAAAATTCTGGAGAGGCCACAGATGTGGACCACCACTT  150

seq1  GAAATGCTGAAACAGGAGGAGTGTCATGAGTTTGAGTCTGCCTTGGGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCTGAAACAGGAGGAGTGTCATGAGTTTGAGTCTGCCTTGGGCTT  200

seq1  CGGAGTTGAAACCTTTCTCAAAAAAGAAAGAAAAGAAAAAGAAAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGTTGAAACCTTTCTCAAAAAAGAAAGAAAAGAAAAAGAAAAAAAAA  250

seq1  AAGAAAAACAGGGCCAGAGAAGTTAAGAGCGCTGGCTGTTTTCCAGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAACAGGGCCAGAGAAGTTAAGAGCGCTGGCTGTTTTCCAGAGGA  300

seq1  TCTGACTTCAATTCCCAGCACACACACAGCAGCTCACGGCTGTAACTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTTCAATTCCCAGCACACACACAGCAGCTCACGGCTGTAACTCTA  350

seq1  GTCCCGAGGGATCTGATGCCCTCTTCTGGCCACAGGAGGCATCAGGAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCGAGGGATCTGATGCCCTCTTCTGGCCACAGGAGGCATCAGGAACA  400

seq1  CACATGATGCACAGGCACACACTCAGGAAAACATCCACACATATGAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGATGCACAGGCACACACTCAGGAAAACATCCACACATATGAAATA  450

seq1  ATAAGAATATAAAGCTGGGCAGTGGTGGCGCATGCCTTTAATTCCAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAATATAAAGCTGGGCAGTGGTGGCGCATGCCTTTAATTCCAGCAC  500

seq1  TTGGAAGGCAGAGGCAGGTGGATTTCTGAGTCTGAGGCCAGCCTGGTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGGCAGAGGCAGGTGGATTTCTGAGTCTGAGGCCAGCCTGGTCTA  550

seq1  CAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTTTCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTTTCGA  600

seq1  AAAACCAAAACCAAAACAAAACAAAACAAAAGAATATA  638
      ||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAAACCAAAACAAAACAAAACAAAAGAATATA  638