BAC Information

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BAC

Clone NameB6Ng01-164I04
Chromosome3 (Build37)
Map Location 13,480,848 - 13,645,479
singlet/doubletdoublet
Overlap geneLOC100039861, 0710005M24Rik, LOC100041679
Upstream geneLOC100039798, EG668033, LOC668037, LOC100039823
Downstream geneLOC100041667, LOC100039882, EG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164I04.bB6Ng01-164I04.g
ACCDH956815DH956816
length1,242478
definitionDH956815|Mus musculus domesticus DNA, BAC clone: B6Ng01-164I04, 5' end.DH956816|Mus musculus domesticus DNA, BAC clone: B6Ng01-164I04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,480,848 - 13,482,104)(13,645,001 - 13,645,479)
sequence
gaattccttgatagcattagttacacacactatctacatagagcccacat
tgtgggctacgtagctctcaggagctgtcttgatggaattaaggtatagg
attagtgttactagagaaaggtcttcactcttgttcagagtccatgataa
cctcatgcttatctgttctagtttctgtgttcccgttccaatgttagtta
atctgtcttctctgatatttgaaagcatagtgttaagtcaagattaacaa
gaatctctctgagaacttagccaaatgcacttgtagtcaacaaaaatgcc
gataactaaaggtgtcaggtaagcatgtgaggtccccagaggggaatcat
gtgaaataaagacatgggtttattcaggtgtccaaagtcctgtgggatga
cactaacaagactggatgggacaaggtggcaaggacaactctgaggtgaa
tggagcagggcgggtaagattagacaactgaaggttcacaatgaaatggc
tgaagcttcagaggagagttttatgaatctaggtttgtaatgaaatatat
acaacaatgagcactatttagaaggtggtgaggcttacaggtagctaagg
aagagataacagatgctatattgagtcactgtgaacctcagtgtaaaagg
tatttttaaaaaatatcatgatagaacaaagggaaatgtaaaggaaagca
agcatagcataaaaaacaccaacaaaatttctttatgtttataatctgtt
acacttaagcttttttcatttttgacttctggggttttatttttttcttt
acattatgaagaaagcagtgccatgtgatatatgtgttcattttacttat
gtctgcatagtgttgtgtaatctagaaataaatttatttacaggatgtgg
aaatgtagtcagtcacttataaagaggtcatttattgggaaccagaacga
ctaatatagtgtaccgcattaaatacactcatttaaaacaaaaatcgaaa
tcataaaacatttagatgaaaatgcacaacatttttgataacatatttaa
tactgtgattcatacgttagttagttctcaagtcttggtttccaaagaaa
ttggtattgtttgtcctgtgctgcctcatctctatctggttatgatttga
ctgaagtctgagccaagggagaagaacactttgatatcattctgacggtt
attctattcgatatctaggagagaactggggaacaaataggt
gaattccagtcttctcacaggatgctgatgctccctcaaggatctcctcc
aaaccatgctcctcagcagtaagccaaagtttgcaattctcacctttcat
cttgtactatccaactctgcagtacagttatatatacacagacacagaca
cagacacagacacagacacagacacagacacacacacacacagacacaga
cacagacacagacacagacacacacacacacagacacagacacagacaca
gacacagacacagacacagacacagacacagacacagacacaggcattga
caacatagatacaggttcaggcatagatgcagatgcagacatagatataa
aaccccacagttataactgatatgcccttcctgggaatcatcttcagtat
ttttgttattccatgggacatatacataggagtatgtatactattctctc
tgcctagcaaactctcgatataggaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_13480848_13482104
seq2: B6Ng01-164I04.b_47_1288

seq1  GAATTCCTTGATAGCATTAGTTACACACACTATCTACATAGAGCCCACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGATAGCATTAGTTACACACACTATCTACATAGAGCCCACAT  50

seq1  TGTGGGCTACGTAGCTCTCAGGAGCTGTCTTGATGGAATTAAGGTATAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCTACGTAGCTCTCAGGAGCTGTCTTGATGGAATTAAGGTATAGG  100

seq1  ATTAGTGTTACTAGAGAAAGGTCTTCACTCTTGTTCAGAGTCCATGATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGTTACTAGAGAAAGGTCTTCACTCTTGTTCAGAGTCCATGATAA  150

seq1  CCTCATGCTTATCTGTTCTAGTTTCTGTGTTCCCGTTCCAATGTTAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGCTTATCTGTTCTAGTTTCTGTGTTCCCGTTCCAATGTTAGTTA  200

seq1  ATCTGTCTTCTCTGATATTTGAAAGCATAGTGTTAAGTCAAGATTAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTTCTCTGATATTTGAAAGCATAGTGTTAAGTCAAGATTAACAA  250

seq1  GAATCTCTCTGAGAACTTAGCCAAATGCACTTGTAGTCAACAAAAATGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCTCTGAGAACTTAGCCAAATGCACTTGTAGTCAACAAAAATGCC  300

seq1  GATAACTAAAGGTGTCAGGTAAGCATGTGAGGTCCCCAGAGGGGAATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTAAAGGTGTCAGGTAAGCATGTGAGGTCCCCAGAGGGGAATCAT  350

seq1  GTGAAATAAAGACATGGGTTTATTCAGGTGTCCAAAGTCCTGTGGGATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATAAAGACATGGGTTTATTCAGGTGTCCAAAGTCCTGTGGGATGA  400

seq1  CACTAACAAGACTGGATGGGACAAGGTGGCAAGGACAACTCTGAGGTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAACAAGACTGGATGGGACAAGGTGGCAAGGACAACTCTGAGGTGAA  450

seq1  TGGAGCAGGGCGGGTAAGATTAGACAACTGAAGGTTCACAATGAAATGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCAGGGCGGGTAAGATTAGACAACTGAAGGTTCACAATGAAATGGC  500

seq1  TGAAGCTTCAGAGGAGAGTTTTATGAATCTAGGTTTGTAATGAAATATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTTCAGAGGAGAGTTTTATGAATCTAGGTTTGTAATGAAATATAT  550

seq1  ACAACAATGAGCACTATTTAGAAGGTGGTGAGGCTTACAGGTAGCTAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAATGAGCACTATTTAGAAGGTGGTGAGGCTTACAGGTAGCTAAGG  600

seq1  AAGAGATAACAGATGCTATATTGAGTCACTGTGAACCTCAGTGTAAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATAACAGATGCTATATTGAGTCACTGTGAACCTCAGTGTAAAAGG  650

seq1  TATTTTTAAAAAATATCATGATAGAACAAAGGGAAATGTAAAGGAAAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAAAAAATATCATGATAGAACAAAGGGAAATGTAAAGGAAAGCA  700

seq1  AGCATAGCATAAAAAACACCAACAAAATTTCTTTATGTTTATAATCTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGCATAAAAAACACCAACAAAATTTCTTTATGTTTATAATCTGTT  750

seq1  ACACTTAAGCTTTTTTCATTTTTGACTTCTGGGGTTTTATTTTTTTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTAAGCTTTTTTCATTTTTGACTTCTGGGGTTTTATTTTTTTCTTT  800

seq1  ACATTATGAAGAAAGCAGTGCCATGTGATATATGTGTTCATTTTACTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATGAAGAAAGCAGTGCCATGTGATATATGTGTTCATTTTACTTAT  850

seq1  GTCTGCATAGTGTTGTGTAATCTAGAAATAAATTTA-TTACAGGATGTGG  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTCTGCATAGTGTTGTGTAATCTAGAAATAAATTTATTTACAGGATGTGG  900

seq1  AAATGTAGTCAGTCACTTATAAAGAGGTCATTTATT-GGAACCAGAACGA  948
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAATGTAGTCAGTCACTTATAAAGAGGTCATTTATTGGGAACCAGAACGA  950

seq1  CTAATATAGTGTACCGCAATTAAATACACTCAATATAAAAACAAAAAATC  998
      ||||||||||||||||| ||||||||||||| || |||||   |||||||
seq2  CTAATATAGTGTACCGC-ATTAAATACACTC-ATTTAAAA--CAAAAATC  996

seq1  GAAAATCATAAAAACAATTTAGATGAAAATGCACAACATATTTGATAACA  1048
      | |||||||||||   ||||||||||||||||||||||| ||||||||||
seq2  G-AAATCATAAAA--CATTTAGATGAAAATGCACAACATTTTTGATAACA  1043

seq1  TATTTAATACTGTGATTCATACGTTAGTTTTAG-TCTCAAGTCTTGGTTC  1097
      |||||||||||||||||||||||||||  |||| ||||||||||||||| 
seq2  TATTTAATACTGTGATTCATACGTTAG--TTAGTTCTCAAGTCTTGGTTT  1091

seq1  CAAAAGAAATGGGTACTGTTTGTCCTGTTGCTGCTCCATCTCTATCCTGT  1147
      | |||||||| |||| ||||||||||| ||||||  ||||||||| ||| 
seq2  CCAAAGAAATTGGTATTGTTTGTCCTG-TGCTGCCTCATCTCTAT-CTGG  1139

seq1  CAATGTATTGACTGACAGTCTGAAGCACAGGGAAGAAG-ACACTTAGATA  1196
        |||  |||||||| |||||| ||| || || ||||| |||||| ||||
seq2  TTATGATTTGACTGA-AGTCTG-AGC-CAAGGGAGAAGAACACTTTGATA  1186

seq1  TCATGTTCCTGACTGTTTTATCCTAATCCAGATCAAGGAGAGGACTGGGG  1246
      |||   | ||||| |  |||| ||| || | ||| ||||||| |||||||
seq2  TCA---TTCTGACGG--TTATTCTATTCGATATCTAGGAGAGAACTGGGG  1231

seq1  AACAAATAGGT  1257
      |||||||||||
seq2  AACAAATAGGT  1242

seq1: chr3_13645001_13645479
seq2: B6Ng01-164I04.g_64_541 (reverse)

seq1  ATTTCCTATTATCTGAGAGTTTTGCTAGGCAGAGAGAATAGTATACATAC  50
      |||||||| |||| ||||| ||||||||||||||||||||||||||||||
seq2  ATTTCCTA-TATC-GAGAG-TTTGCTAGGCAGAGAGAATAGTATACATAC  47

seq1  TCCTATGTATATGTCCCATGGAATAACAAAAATACTGAAGATGATT-CCA  99
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCCTATGTATATGTCCCATGGAATAACAAAAATACTGAAGATGATTCCCA  97

seq1  GGAA-GGCATATCAGTTATAACTGTGGGGTTTTATATCTATGTCTGCATC  148
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGCATATCAGTTATAACTGTGGGGTTTTATATCTATGTCTGCATC  147

seq1  TGCATCTATGCCTGAACCTGTATCTATGTTGTCAATGCCTGTGTCTGTGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTATGCCTGAACCTGTATCTATGTTGTCAATGCCTGTGTCTGTGT  197

seq1  CTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCT  247

seq1  GTGTGTGTGTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTGTGTGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTGTGTGT  297

seq1  GTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTATAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTATAT  347

seq1  ATAACTGTACTGCAGAGTTGGATAGTACAAGATGAAAGGTGAGAATTGCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGTACTGCAGAGTTGGATAGTACAAGATGAAAGGTGAGAATTGCA  397

seq1  AACTTTGGCTTACTGCTGAGGAGCATGGTTTGGAGGAGATCCTTGAGGGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGGCTTACTGCTGAGGAGCATGGTTTGGAGGAGATCCTTGAGGGA  447

seq1  GCATCAGCATCCTGTGAGAAGACTGGAATTC  479
      |||||||||||||||||||||||||||||||
seq2  GCATCAGCATCCTGTGAGAAGACTGGAATTC  478