BAC Information

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BAC

Clone NameB6Ng01-164N01
Chromosome3 (Build37)
Map Location 67,943,537 - 68,138,260
singlet/doubletdoublet
Overlap geneEG545531, LOC631379
Upstream geneRsrc1, Mlf1, Gfm1, Lxn, Rarres1, Mfsd1, LOC667207, Gm412, EG208426
Downstream geneSchip1, Il12a, LOC639530, 1110032F04Rik, Ift80, Smc4, Trim59, LOC667272, Kpna4, Arl14, Ppm1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-164N01.bB6Ng01-164N01.g
ACCDH957041DH957042
length1,1771,127
definitionDH957041|Mus musculus domesticus DNA, BAC clone: B6Ng01-164N01, 5' end.DH957042|Mus musculus domesticus DNA, BAC clone: B6Ng01-164N01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,943,537 - 67,944,712)(68,137,123 - 68,138,260)
sequence
gaattcaattcttttaaactaaattgaatatctgaaggaaaataaatctg
aacaaccagccgagttttatccattgctttcccataatttcactgcacta
tttgaattgggttagatcagatttcagatcaaaaacactttactacaaat
ttggagattgagctctaacaagacagaggtgtttcaggataaagagatga
ctgtctaatagctggatatcacttgaattcataatgttcccctgtccact
ttgttaagctttgttattaaagcaaagctaagaacgcatgagttcaggag
gtggactacagacaaccctggtgtcttttagacacccaaacgtgaagaca
caggacggagtaagggaaagctctctactcaaatatatttcaagattggt
gagaatcatacattctagaatgatgcatatatttcaaatgatgggcttga
cccagagtatatgtgagtttacacacacacacacacacacacacacacac
acacacacacacacaccggagctggacaaaccgtcagactcaggtaagtt
taccaacaaaagtacagccttctgaatagatgatcttaaggaagaagtta
ccatgtagatcaggtgactcacaaagcaagggtcctgagtggagtctgat
aggtgatttcctgaaataaaggggtttcattcatcatcctttcattcagc
tgtctatttcattgattttgtttcctccattatatcaatatatatgaatt
ccaaatagtatatatttatttgtataaccaaaagatactcatcaagcatt
tagtaagcatcaggtactttttcaggatgtcttgatgaaaacccagacat
gtatagaaaccagtacccttgggatctctcaccaggcaggcagtgggtta
tactcagctgtggaataagggtagaattcagaacaaagtatagttttctt
ctgtcccctcagatatgagtgggtggcatcacttgaaacacacttgaaca
tataataccatgcctaaagaatagtcatcaacgaaccaaagcaaggggat
taagcctagaagtctgaaatactaaactcaggaacttagcaacgtctgca
tgacagcagaacatgtcacctgaagaaaaacggaaagagcagaggagcta
tagtacgatgaacacatttctaccaga
gaattctcttagttccaagactttgagttcatatttgaatgtttctgccc
ctgttgctgatatcttgcacagcacagaattaggcagaacattgaaaaga
agcaaactcttcagcagtctttagacctgagtccctctgactgaagtcct
tggcaggtccacaaattagttctaattttactatacagttttgtcacacc
ttagaatgtagaagggttaacacacatgcataaagtttatctaaaaaaaa
aacctgacatgtaattaaaagtgtgtgtgcatgtgtgtctcacacagagt
tggccagagtaatgttgtctaagtgttatcagaaattatctcttgttaat
atttaatgcaattatttctgataaatattttttctggactttttaagtgt
taacatgagactgtaacatctgattgtaaataatgggcctttcagtttta
ttttttaacagccccatgatatattcgattatatataattgaatgtatgg
tataactatagctgatgacttttaaaaggtaacatttttcataatgatat
taatggcgttataaaaggtttctgtttccaaagatgtaactggggtccac
atatcctttgacagactttagcatcccaaagctgacatcagagacactct
cctttagccactgctttcgtaagttgctcattccatggtgaggtggcagg
ctccctccattggcaaggatttcatcttgagcagctgcctcagtctgttc
agtcagtgggtcactaattcccctgtagttaaaggcaaaatagaagcaga
tgcatgcgcctgcatcatacatctgcatcaccctgaatgtagagtgaggt
gcaaactcagcttcgctttcttcggattcccttcttatcctctctttaca
tttctaaacagatctataaccctgccccaaggagccgaagtctcaaagat
tctcctattatatattattcaaaacccaatcacgcatgtatgcagtgaca
taagtcagcaagtagccctctgtcctttaactcttcagctgccagacacc
aaacttgcttgatgtcatctgcttgtttttttggctggagaactttccac
cgctccctcgacagggaaggtggctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_67943537_67944712
seq2: B6Ng01-164N01.b_46_1222

seq1  GAATTCAATTCTTTTAAACTAAATTGAATATCTGAAGGAAAATAAATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCTTTTAAACTAAATTGAATATCTGAAGGAAAATAAATCTG  50

seq1  AACAACCAGCCGAGTTTTATCCATTGCTTTCCCATAATTTCACTGCACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCAGCCGAGTTTTATCCATTGCTTTCCCATAATTTCACTGCACTA  100

seq1  TTTGAATTGGGTTAGATCAGATTTCAGATCAAAAACACTTTACTACAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTGGGTTAGATCAGATTTCAGATCAAAAACACTTTACTACAAAT  150

seq1  TTGGAGATTGAGCTCTAACAAGACAGAGGTGTTTCAGGATAAAGAGATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGATTGAGCTCTAACAAGACAGAGGTGTTTCAGGATAAAGAGATGA  200

seq1  CTGTCTAATAGCTGGATATCACTTGAATTCATAATGTTCCCCTGTCCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTAATAGCTGGATATCACTTGAATTCATAATGTTCCCCTGTCCACT  250

seq1  TTGTTAAGCTTTGTTATTAAAGCAAAGCTAAGAACGCATGAGTTCAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAGCTTTGTTATTAAAGCAAAGCTAAGAACGCATGAGTTCAGGAG  300

seq1  GTGGACTACAGACAACCCTGGTGTCTTTTAGACACCCAAACGTGAAGACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACTACAGACAACCCTGGTGTCTTTTAGACACCCAAACGTGAAGACA  350

seq1  CAGGACGGAGTAAGGGAAAGCTCTCTACTCAAATATATTTCAAGATTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACGGAGTAAGGGAAAGCTCTCTACTCAAATATATTTCAAGATTGGT  400

seq1  GAGAATCATACATTCTAGAATGATGCATATATTTCAAATGATGGGCTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCATACATTCTAGAATGATGCATATATTTCAAATGATGGGCTTGA  450

seq1  CCCAGAGTATATGTGAGTTTACACACACACACACACACACACACACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGTATATGTGAGTTTACACACACACACACACACACACACACACAC  500

seq1  ACACACACACACACACCGGAGCTGGACAAACCGTCAGACTCAGGTAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACCGGAGCTGGACAAACCGTCAGACTCAGGTAAGTT  550

seq1  TACCAACAAAAGTACAGCCTTCTGAATAGATGATCTTAAGGAAGAAGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACAAAAGTACAGCCTTCTGAATAGATGATCTTAAGGAAGAAGTTA  600

seq1  CCATGTAGATCAGGTGACTCACAAAGCAAGGGTCCTGAGTGGAGTCTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTAGATCAGGTGACTCACAAAGCAAGGGTCCTGAGTGGAGTCTGAT  650

seq1  AGGTGATTTCCTGAAATAAAGGGGTTTCATTCATCATCCTTTCATTCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATTTCCTGAAATAAAGGGGTTTCATTCATCATCCTTTCATTCAGC  700

seq1  TGTCTATTTCATTGATTTTGTTTCCTCCATTATATCAATATATATGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATTTCATTGATTTTGTTTCCTCCATTATATCAATATATATGAATT  750

seq1  CCAAATAGTATATATTTATTTGTATAACCAAAAGATACTCATCAAGCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAGTATATATTTATTTGTATAACCAAAAGATACTCATCAAGCATT  800

seq1  TAGTAAGCATCAGGTAC-TTTTCAGGATGTC-TGATGAAAACCCAGACAT  848
      ||||||||||||||||| ||||||||||||| ||||||||||||||||||
seq2  TAGTAAGCATCAGGTACTTTTTCAGGATGTCTTGATGAAAACCCAGACAT  850

seq1  GTATAGAAACCAGTACCCTTGGGATCTCTCACCAGGCAGGCAGTGGGTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGAAACCAGTACCCTTGGGATCTCTCACCAGGCAGGCAGTGGGTTA  900

seq1  TACTCAGCTGTGGAATAAGGGTAGAATTCAGAACAAAGTATAG-TTTCTT  947
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TACTCAGCTGTGGAATAAGGGTAGAATTCAGAACAAAGTATAGTTTTCTT  950

seq1  CTGTCCCCTCAGATATGAGGTGGGTGGCATCACTTGAAACACACTTTGAA  997
      |||||||||||||||||| ||||||||||||||||||||||||| |||||
seq2  CTGTCCCCTCAGATATGA-GTGGGTGGCATCACTTGAAACACAC-TTGAA  998

seq1  CAATATAATACCATGCCTAAAGAATAGTCATCAACGAACAAAAGCAAGGG  1047
      | ||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  C-ATATAATACCATGCCTAAAGAATAGTCATCAACGAACCAAAGCAAGGG  1047

seq1  GATAAAG-CTAGAAGTCTGATATACTAAAACTCAGGAGC-TAGCAACGGC  1095
      ||| ||| |||||||||||| ||||| |||||||||| | |||||||| |
seq2  GATTAAGCCTAGAAGTCTGAAATACT-AAACTCAGGAACTTAGCAACGTC  1096

seq1  TGCCATGACAGCAG-ACATGTCACCTGAAG-AGAACGGAAGGAGCAGAGG  1143
      || ||||||||||| ||||||||||||||| | ||||||| |||||||||
seq2  TG-CATGACAGCAGAACATGTCACCTGAAGAAAAACGGAAAGAGCAGAGG  1145

seq1  AAGCAAAAGGACAGATG-ACACATTTCTACCAGA  1176
       ||| | || || |||| ||||||||||||||||
seq2  -AGCTATAGTAC-GATGAACACATTTCTACCAGA  1177

seq1: chr3_68137123_68138260
seq2: B6Ng01-164N01.g_67_1193 (reverse)

seq1  ATAGCCA-CATCACTGTTCGAGGGAGACGGTGAGAAGGTTCTTCAGCACA  49
      ||||||| | || ||| ||||||||| ||||| ||| ||||| |||| ||
seq2  ATAGCCACCTTCCCTG-TCGAGGGAG-CGGTG-GAAAGTTCTCCAGC-CA  46

seq1  AAAAAACAAGCAGATGACATCACAGCAAAGTTTGGTGGTCTGGCAGCTGG  99
      |||||||||||||||||||||| ||| ||||||||| |||||||||||| 
seq2  AAAAAACAAGCAGATGACATCA-AGC-AAGTTTGGT-GTCTGGCAGCTGA  93

seq1  AGAAGTTAAGGGACAGAGGGCTTACTTGCTGACTTATGTCACTGCATACA  149
      || |||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  AG-AGTTAAAGGACAGAGGGC-TACTTGCTGACTTATGTCACTGCATACA  141

seq1  TGCGTGATTTGGGTTTTGAATAATATATAATAGGAGAATCTTTTGAGACT  199
      ||||||| |||||||||||||||||||||||||||||||| |||||||||
seq2  TGCGTGA-TTGGGTTTTGAATAATATATAATAGGAGAATC-TTTGAGACT  189

seq1  TCGGCTCCTTGGGGCAGGGTTATAGATCTGTTTAGAAATGTAAAAGAGAG  249
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCGGCTCCTTGGGGCAGGGTTATAGATCTGTTTAGAAATGT-AAAGAGAG  238

seq1  GATAAGAAGGGAATCCGAAGAAAGCGAAGCTGAGTTTGCACCTCACTCTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGAAGGGAATCCGAAGAAAGCGAAGCTGAGTTTGCACCTCACTCTA  288

seq1  CATTCAGGGTGATGCAGATGTATGATGCAGGCGCATGCATCTGCTTCTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGGGTGATGCAGATGTATGATGCAGGCGCATGCATCTGCTTCTAT  338

seq1  TTTGCCTTTAACTACAGGGGAATTAGTGACCCACTGACTGAACAGACTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTTTAACTACAGGGGAATTAGTGACCCACTGACTGAACAGACTGA  388

seq1  GGCAGCTGCTCAAGATGAAATCCTTGCCAATGGAGGGAGCCTGCCACCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTGCTCAAGATGAAATCCTTGCCAATGGAGGGAGCCTGCCACCTC  438

seq1  ACCATGGAATGAGCAACTTACGAAAGCAGTGGCTAAAGGAGAGTGTCTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGAATGAGCAACTTACGAAAGCAGTGGCTAAAGGAGAGTGTCTCT  488

seq1  GATGTCAGCTTTGGGATGCTAAAGTCTGTCAAAGGATATGTGGACCCCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCAGCTTTGGGATGCTAAAGTCTGTCAAAGGATATGTGGACCCCAG  538

seq1  TTACATCTTTGGAAACAGAAACCTTTTATAACGCCATTAATATCATTATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCTTTGGAAACAGAAACCTTTTATAACGCCATTAATATCATTATG  588

seq1  AAAAATGTTACCTTTTAAAAGTCATCAGCTATAGTTATACCATACATTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTTACCTTTTAAAAGTCATCAGCTATAGTTATACCATACATTCA  638

seq1  ATTATATATAATCGAATATATCATGGGGCTGTTAAAAAATAAAACTGAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATATAATCGAATATATCATGGGGCTGTTAAAAAATAAAACTGAAA  688

seq1  GGCCCATTATTTACAATCAGATGTTACAGTCTCATGTTAACACTTAAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCATTATTTACAATCAGATGTTACAGTCTCATGTTAACACTTAAAAA  738

seq1  GTCCAGAAAAAATATTTATCAGAAATAATTGCATTAAATATTAACAAGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGAAAAAATATTTATCAGAAATAATTGCATTAAATATTAACAAGAG  788

seq1  ATAATTTCTGATAACACTTAGACAACATTACTCTGGCCAACTCTGTGTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTCTGATAACACTTAGACAACATTACTCTGGCCAACTCTGTGTGA  838

seq1  GACACACATGCACACACACTTTTAATTACATGTCAGGTTTTTTTTTTAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACATGCACACACACTTTTAATTACATGTCAGGTTTTTTTTTTAGA  888

seq1  TAAACTTTATGCATGTGTGTTAACCCTTCTACATTCTAAGGTGTGACAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTATGCATGTGTGTTAACCCTTCTACATTCTAAGGTGTGACAAA  938

seq1  ACTGTATAGTAAAATTAGAACTAATTTGTGGACCTGCCAAGGACTTCAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATAGTAAAATTAGAACTAATTTGTGGACCTGCCAAGGACTTCAGT  988

seq1  CAGAGGGACTCAGGTCTAAAGACTGCTGAAGAGTTTGCTTCTTTTCAATG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGACTCAGGTCTAAAGACTGCTGAAGAGTTTGCTTCTTTTCAATG  1038

seq1  TTCTGCCTAATTCTGTGCTGTGCAAGATATCAGCAACAGGGGCAGAAACA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCTAATTCTGTGCTGTGCAAGATATCAGCAACAGGGGCAGAAACA  1088

seq1  TTCAAATATGAACTCAAAGTCTTGGAACTAAGAGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATATGAACTCAAAGTCTTGGAACTAAGAGAATTC  1127