BAC Information

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BAC

Clone NameB6Ng01-165A23
Chromosome3 (Build37)2 (Build37)
Map Location 91,099,996 - 91,100,93480,331,916 - 80,332,440
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGatad2b, Slc27a3, Ints3, Npr1, LOC668141, Ilf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8, S100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
Downstream geneLOC100042463, Pglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165A23.bB6Ng01-165A23.g
ACCDH957218DH957219
length9401,058
definitionDH957218|Mus musculus domesticus DNA, BAC clone: B6Ng01-165A23, 5' end.DH957219|Mus musculus domesticus DNA, BAC clone: B6Ng01-165A23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(91,099,996 - 91,100,934)(80,331,916 - 80,332,440)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtgtgtt
catgtcctttaccctgatcctcatcatcccatttttgtcaatcttcatac
tgcatgaacaatacatttcatataattctctgtagatgaatattcttcct
tctgggaacagagttgtgagctcatatatatgatatgattatataatcat
tataccattggtggattactgaaaataaatgttgaatagatccaagtact
ttactatttctatttcatgttcaatatatgaaagtaatgcaagatttata
atagtaataatatatatgataatgtacaacaatatataatataatatata
tagtatatgatatataatatactatattatacattaatacatataataat
ataaataataataatgaaagaaaataatgcaaggtttacttaagatactg
catgagtgatgtttcaaatatgtttgaagttcaatagtggtaacatttat
gctgagtccttataatcaaattttctttgcaaagtgtttacaatattaaa
ctttgaaactatgatttaagttaataaagacaaattatgtgatcaatttt
ttctgtttataatctggatgatttggaatgttttgtatgttatcagaggg
caaaaatacaagtctttttaataagtacttggtatttcaattctttaaac
ctggactttttggcaatttataggtaatcctcatctctaacaagaaactg
actgtaggcataagaattcttttttccccccagaacacacatacattttt
tgtttgttgtttgtttgtttagttggttgggttggttggg
gaattcctttatgcacttagttttgaccttagtgaagaagatagaaatgg
ctaaattcacattcttcaacatgataattgccagttatgccagcaccatt
tcttgaaaaggctgtcgtttttcaattgtatggtttcagctcccttgtca
aatatcaagtgaacatacatgtgtgggatcatttctggatattcaattct
attccattggactacttgtctgttgctataccagtgacatgctgttttta
tcacaattgctctgtagtacagctttaggtcaggcatggtgattccacca
gaggttctttattccttgagaagagtttttgttatcctaggttttttgtt
attctggatgaatttgcagattgccctttctaattctttgaagaattgag
ttggaattttgatggggattgcattgagtctgtcgattgcttttggcaag
atggccatttttactatagtgatcctgcctatccatggacatgggacatc
tttccatcttctgcgatcttctttaatttctttcttcagagacttgaagt
tcttatcatacagacctttcacttccttagagtcatgcaaaagtatttta
tgttatttatgacaatagagaagggggttgttcccctaatttctttctta
gcctgtttatcctttgtgtagagaaaggccattgacatgtttgagctaat
tatatatccagctacttcactgaatcattttaacaggttagggattctct
ggtgaaatttttagggtcacttatatactatcatatcatctgcaaaaagt
gatattttaacttcttcctttccaatttgtatcctcttgatctccttttg
ttgtcgaattgctatggcttggacttcaaataccatattgaataggtatg
gagaaagttggcagccttgtctaagtccctgattttagtggttttgtttc
cagcttctcaccatttaatttgattgttggctactggttgctgtatattc
cctttatataggttagggtatcggccttgtaattcctgatctttccaaga
acttttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_91099996_91100934
seq2: B6Ng01-165A23.b_43_981

seq1  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATT  50

seq1  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC  100

seq1  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGTGTT  150

seq1  CATGTCCTTTACCCTGATCCTCATCATCCCATTTTTGTCAATCTTCATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCTTTACCCTGATCCTCATCATCCCATTTTTGTCAATCTTCATAC  200

seq1  TGCATGAACAATACATTTCATATAATTCTCTGTAGATGAATATTCTTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGAACAATACATTTCATATAATTCTCTGTAGATGAATATTCTTCCT  250

seq1  TCTGGGAACAGAGTTGTGAGCTCATATATATGATATGATTATATAATCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAACAGAGTTGTGAGCTCATATATATGATATGATTATATAATCAT  300

seq1  TATACCATTGGTGGATTACTGAAAATAAATGTTGAATAGATCCAAGTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCATTGGTGGATTACTGAAAATAAATGTTGAATAGATCCAAGTACT  350

seq1  TTACTATTTCTATTTCATGTTCAATATATGAAAGTAATGCAAGATTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATTTCTATTTCATGTTCAATATATGAAAGTAATGCAAGATTTATA  400

seq1  ATAGTAATAATATATATGATAATGTACAACAATATATAATATAATATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAATAATATATATGATAATGTACAACAATATATAATATAATATATA  450

seq1  TAGTATATGATATATAATATACTATATTATACATTAATACATATAATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATATGATATATAATATACTATATTATACATTAATACATATAATAAT  500

seq1  ATAAATAATAATAATGAAAGAAAATAATGCAAGGTTTACTTAAGATACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAATAATAATGAAAGAAAATAATGCAAGGTTTACTTAAGATACTG  550

seq1  CATGAGTGATGTTTCAAATATGTTTGAAGTTCAATAGTGGTAACATTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTGATGTTTCAAATATGTTTGAAGTTCAATAGTGGTAACATTTAT  600

seq1  GCTGAGTCCTTATAATCAAATTTTCTCTGCAAAGTGTTTACAATATTAAA  650
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCTGAGTCCTTATAATCAAATTTTCTTTGCAAAGTGTTTACAATATTAAA  650

seq1  CTTTGAAACTATGATTTAAGTTAATAAAGACAAATTATGTGATCAATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAACTATGATTTAAGTTAATAAAGACAAATTATGTGATCAATTTT  700

seq1  TTCTGTTTATAATCTGGATGATTTGGAATGTTTTGTATGTTATCAGAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTATAATCTGGATGATTTGGAATGTTTTGTATGTTATCAGAGGG  750

seq1  CAAAAATACAAGTCTTTTTAATAAGTACTTGGTATTTCAATTCTTTAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATACAAGTCTTTTTAATAAGTACTTGGTATTTCAATTCTTTAAAC  800

seq1  CTGGACTTTTTGGCAATTTATAGGTAATCCTCATCTCTAACAAGAAACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTTTTTGGCAATTTATAGGTAATCCTCATCTCTAACAAGAAACTG  850

seq1  ACTGTAGGCATAAGAATTCTTTTTTCCCCCCAGAACACACATACATTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAGGCATAAGAATTCTTTTTTCCCCCCAGAACACACATACATTTTT  900

seq1  TGTTTGTTTGTTTGTTTGTTTAGTTGGTT-GGTTGGTTGG  939
      |||||| |||||||||||||||||||||| ||||||||||
seq2  TGTTTG-TTGTTTGTTTGTTTAGTTGGTTGGGTTGGTTGG  939

seq1: chr2_80331916_80332440
seq2: B6Ng01-165A23.g_597_1123 (reverse)

seq1  ATAAAAG-CCTTGGAAAGATCAGGAATT-CAAGGCCCATA-CCTAAACAT  47
      |||||||  ||||||||||||||||||| ||||||| ||| ||||| |  
seq2  ATAAAAGTTCTTGGAAAGATCAGGAATTACAAGGCCGATACCCTAACCTA  50

seq1  GATAAAAGCAATCTACAGCAAACCAGTAGCCAAC-ATCAAAGTAAATGGT  96
       ||||| | ||| |||||| |||||||||||||| |||||| ||||||||
seq2  TATAAAGGGAATATACAGC-AACCAGTAGCCAACAATCAAATTAAATGGT  99

seq1  GAGAAGCTGGAAGCATTCCCACTAAAATCAGGGAC-TAGACAAGGCTGCC  145
      |||||||||||| ||   ||||||||||||||||| ||||||||||||||
seq2  GAGAAGCTGGAAACAAAACCACTAAAATCAGGGACTTAGACAAGGCTGCC  149

seq1  CACTTTCTCCATATCTATTCAACATAGTATTTGAAGTTCTAGCCAGAGCA  195
       |||||||||||| |||||||| || ||||||||||| | ||||| ||||
seq2  AACTTTCTCCATACCTATTCAATATGGTATTTGAAGTCCAAGCCATAGCA  199

seq1  ATTCGACAAC-AAAGGAGATCAAAGGGATACAAATTGGAAAGGAAGAAGT  244
      |||||||||| ||||||||||||  |||||||||||||||||||||||||
seq2  ATTCGACAACAAAAGGAGATCAAGAGGATACAAATTGGAAAGGAAGAAGT  249

seq1  TAAAATATCACTTTTTGCAGATGATATAATAGTATATATAAGTGACCCTA  294
      ||||||||||||||||||||||||||| ||||  ||||||||||||||||
seq2  TAAAATATCACTTTTTGCAGATGATATGATAG--TATATAAGTGACCCTA  297

seq1  AAAATTCCACCAGAGAACTCCTAAGCCTGAATAACAGCTTCAGTGAAGTA  344
      |||||| ||||||||||  ||||| ||||   ||  | ||||||||||||
seq2  AAAATTTCACCAGAGAATCCCTAA-CCTGTTAAAATGATTCAGTGAAGTA  346

seq1  GCTGGATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAAA  394
      |||||||||| ||||| |||||||| ||||||||||||||||||||||||
seq2  GCTGGATATATAATTAGCTCAAACATGTCAATGGCCTTTCTCTACACAAA  396

seq1  GGATAAAAAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCACAATAG  444
      ||||||| ||||| ||||||||||||||| |||||| |||||| | || |
seq2  GGATAAACAGGCTAAGAAAGAAATTAGGGGAACAACCCCCTTCTCTATTG  446

seq1  TAACAAATAATATAAAATACCTTGGCATGACTCTAAGGAAGTGAAAGGTC  494
      | | |||||| ||||||||| || ||||||||||||||||||||||||||
seq2  TCATAAATAACATAAAATACTTTTGCATGACTCTAAGGAAGTGAAAGGTC  496

seq1  TGTATGATAAGAACTTCAAGTCTCTGAAGAA  525
      |||||||||||||||||||||||||||||||
seq2  TGTATGATAAGAACTTCAAGTCTCTGAAGAA  527