BAC Information

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BAC

Clone NameB6Ng01-165C11
Chromosome3 (Build37)
Map Location 106,983,559 - 107,144,141
singlet/doubletdoublet
Overlap geneKcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15
Upstream geneChi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266, Kcna3, AI504432, Kcna2
Downstream geneLOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654, Amigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165C11.bB6Ng01-165C11.g
ACCDH957288DH957289
length1,0711,028
definitionDH957288|Mus musculus domesticus DNA, BAC clone: B6Ng01-165C11, 5' end.DH957289|Mus musculus domesticus DNA, BAC clone: B6Ng01-165C11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,983,559 - 106,984,619)(107,143,100 - 107,144,141)
sequence
ggaattcctctctggtctttaactgcttcaccctcaaagggtctcttctc
catggaatgccttcttccctgcacccttttctcagtctccaccatctttg
ttttgattcagatgcccccttgcaaagatgctctcactcaagcagagtca
gttcctccaccccacagccactagctgccctgcttacaactccttcagcc
catgagcatagagctggtgtcttcaagcccggattcccaattcagctctg
atatctcaaaaccttgagcaactttacttctctagtgacacagtttcccc
atttgtataactggaacaataccagaaatcacttgggtcgctgtgggatt
gaatgaactaacacaggcagggcacctggccctgtacctgatctgtcata
agtgcttgagaaatattaactgctgtgtgtagtgttcagtgaatgctatg
accagctccaggctatctcctgggtattttctctgtgaatatgtttgcac
atgaaattcaaacatattcatgtttcacttttctcaattgattcttctaa
gaatagaaatgtaaagaacaaataagatatgagaaaggtgaggctttctc
cacccatagaaagtctactcctcatggggcctctattctctcctattatt
cagctgtgattctaacagttcttgaccaaggtgagcagcatcctttgaga
tcatcgatgacatgatgcatatctcccagtagaaaactgaccgggttctg
ttgggagtctgttggagcaccctctggaccataagcacctttgaaaggag
ctcgtgtttggggctcttttgtcactcaagcatccagcagagtttctgca
tccaattaatgaacgtgatggttttatcttagttatcaactttgactgga
ccaagaagcacacttctaagtatgtctgcgaggatgctgccacaaacact
ggggcattgtaggtagagaacacatatgccagctgccactctgaaagtga
gtggcactgtccttgtagctggaggcaaaaagctagagctcacagcaaat
aaaatggccacctgattcctt
gaattctatttggtgcattctgcatagactgaactgttagaataaatata
tgtaagtctcctggctacctaatttgttatgacgttttaattctctgatc
atttacagtgagcttgcttaaatttgtattatttctaatattttagaaca
ggcttaaacttgtatattttagaaccaggtgtattaaaatatagtaatat
tcctatattctcagcactagggagatgctggtaaggtgatcataaatcag
tgaccagcctagactaaaaagtaagagattgtctttttccaaaaaaaaaa
gtttatttatttaatgagtatgagtacactgtcatatggttacagatggt
tgtgagccaccatgtagctgctgggaattgagctcaggaactctggaaga
gcagtcagtgctcttaaccactgagccatctttccaacccaagagattgt
cttaagacaaacagcaacaaagaattaaactctcagtaattttaagtata
cctgggtttggcctaccagatcaaattctggatggagatcatgtcataca
atttcctccctatattttcattggaatagcacatagaacatactaatgat
tggttgtctgagatgcaaggctctcttagctgaagcctaagcttttcata
gttttgtattccttttccagaatgtcaatgaactttaactttaatactaa
caataatgaaaaagacacataagaatatttgtaaaataaaaaatttgatg
aagaaatgaaataagcttaatgaaaagatagttagacctatgtgctgaaa
tgaagaaagctttcaaatgtattatatttttctaaattaattcatagagt
tagtgaaacagcaattatagacaactgttcataacatttatgaattgatt
ataaatttatagaagacagacttaagcaatagcagtgacagtacagggga
agtgatgaggatttttaataagatataaactgtgggtattataaaaggtg
ataccctcatcattgaattatttattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_106983559_106984619
seq2: B6Ng01-165C11.b_44_1114

seq1  GGAATTCCTCTCTGGTCTTTAACTGCTTCACCCTCAAAGGGTCTCTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCCTCTCTGGTCTTTAACTGCTTCACCCTCAAAGGGTCTCTTCTC  50

seq1  CATGGAATGCCTTCTTCCCTGCACCCTTTTCTCAGTCTCCACCATCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAATGCCTTCTTCCCTGCACCCTTTTCTCAGTCTCCACCATCTTTG  100

seq1  TTTTGATTCAGATGCCCCCTTGCAAAGATGCTCTCACTCAAGCAGAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATTCAGATGCCCCCTTGCAAAGATGCTCTCACTCAAGCAGAGTCA  150

seq1  GTTCCTCCACCCCACAGCCACTAGCTGCCCTGCTTACAACTCCTTCAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCCACCCCACAGCCACTAGCTGCCCTGCTTACAACTCCTTCAGCC  200

seq1  CATGAGCATAGAGCTGGTGTCTTCAAGCCCGGATTCCCAATTCAGCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGCATAGAGCTGGTGTCTTCAAGCCCGGATTCCCAATTCAGCTCTG  250

seq1  ATATCTCAAAACCTTGAGCAACTTTACTTCTCTAGTGACACAGTTTCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCAAAACCTTGAGCAACTTTACTTCTCTAGTGACACAGTTTCCCC  300

seq1  ATTTGTATAACTGGAACAATACCAGAAATCACTTGGGTCGCTGTGGGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATAACTGGAACAATACCAGAAATCACTTGGGTCGCTGTGGGATT  350

seq1  GAATGAACTAACACAGGCAGGGCACCTGGCCCTGTACCTGATCTGTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAACTAACACAGGCAGGGCACCTGGCCCTGTACCTGATCTGTCATA  400

seq1  AGTGCTTGAGAAATATTAACTGCTGTGTGTAGTGTTCAGTGAATGCTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTGAGAAATATTAACTGCTGTGTGTAGTGTTCAGTGAATGCTATG  450

seq1  ACCAGCTCCAGGCTATCTCCTGGGTATTTTCTCTGTGAATATGTTTGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTCCAGGCTATCTCCTGGGTATTTTCTCTGTGAATATGTTTGCAC  500

seq1  ATGAAATTCAAACATATTCATGTTTCACTTTTCTCAATTGATTCTTCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTCAAACATATTCATGTTTCACTTTTCTCAATTGATTCTTCTAA  550

seq1  GAATAGAAATGTAAAGAACAAATAAGATATGAGAAAGGTGAGGCTTTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGAAATGTAAAGAACAAATAAGATATGAGAAAGGTGAGGCTTTCTC  600

seq1  CACCCATAGAAAGTCTACTCCTCATGGGGCCTCTATTCTCTCCTATTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATAGAAAGTCTACTCCTCATGGGGCCTCTATTCTCTCCTATTATT  650

seq1  CAGCTGTGATTCTAACAGTTCTTGACCAAGGTGAGCAGCATCCTTTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTGATTCTAACAGTTCTTGACCAAGGTGAGCAGCATCCTTTGAGA  700

seq1  TCATCGATGACATGATGCATATCTCCCAGTAGAAAACTGACC-GGTTCTG  749
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCATCGATGACATGATGCATATCTCCCAGTAGAAAACTGACCGGGTTCTG  750

seq1  TT-GGAGTCTGTTGGAGCACCCTCTGGACCATAAGCACC-TTGAAAGGAG  797
      || |||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTGGGAGTCTGTTGGAGCACCCTCTGGACCATAAGCACCTTTGAAAGGAG  800

seq1  CTCGTGTTT-GGGCTC-TTTGTCACTCAAGCATCCAGCAGAGTTTCTGCA  845
      ||||||||| |||||| |||||||||||||||||||||||||||||||||
seq2  CTCGTGTTTGGGGCTCTTTTGTCACTCAAGCATCCAGCAGAGTTTCTGCA  850

seq1  TCCAA-TAATGAACGTGATGG-TTTATCTTAGTTATCAAC-TTGACTGGA  892
      ||||| ||||||||||||||| |||||||||||||||||| |||||||||
seq2  TCCAATTAATGAACGTGATGGTTTTATCTTAGTTATCAACTTTGACTGGA  900

seq1  CCAAGAAGCACACTTCTAAGTATGTCTGCGAGGATGCTGCCACAAACACT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAGCACACTTCTAAGTATGTCTGCGAGGATGCTGCCACAAACACT  950

seq1  -GGGCA-TGTAGGTCAGAGAACACAGATGCAAGCTGCCACTCTGAAAGTG  990
       ||||| ||||||| |||||||||| |||| |||||||||||||||||||
seq2  GGGGCATTGTAGGT-AGAGAACACATATGCCAGCTGCCACTCTGAAAGTG  999

seq1  AGTGGCACTGT-CTTGTAGGCTGGAGGCAGAAAGC-AGAGCTCACAAGCA  1038
      ||||||||||| |||||| |||||||||| ||||| ||||||||| ||||
seq2  AGTGGCACTGTCCTTGTA-GCTGGAGGCAAAAAGCTAGAGCTCAC-AGCA  1047

seq1  AAAAAAATGCCCACCTGA-TCCTT  1061
      || |||||| |||||||| |||||
seq2  AATAAAATGGCCACCTGATTCCTT  1071

seq1: chr3_107143100_107144141
seq2: B6Ng01-165C11.g_70_1097 (reverse)

seq1  TTAATAAATTAATTC-ATGATTGAGTGTATCAACCTTTTATAATTACCAC  49
      |||||||| |||||| |||| |||| ||||| ||||||||||||  ||||
seq2  TTAATAAA-TAATTCAATGA-TGAGGGTATC-ACCTTTTATAATACCCAC  47

seq1  AGTTTATATCTTATTTTAAAAATCCTCATCACTTCCCCTGTACTGTCACT  99
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  AGTTTATATCTTA--TTAAAAATCCTCATCACTTCCCCTGTACTGTCACT  95

seq1  GCTATTTGCTTAAGTTCTGTTCTTTCTTATAAATTTTATAATCAATTCAT  149
      |||| ||||||||| |||| ||||   |||||| ||||||||||||||| 
seq2  GCTA-TTGCTTAAG-TCTG-TCTT--CTATAAA-TTTATAATCAATTCA-  138

seq1  TAAATGTTATGAACAGTTGTCTATAATTGCTGTTTCACTAACTCTATGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTATGAACAGTTGTCTATAATTGCTGTTTCACTAACTCTATGAA  188

seq1  TTAATTTAGAAAAATATAATACATTTTGAAAAGCTTTCTTCATTTCAGCA  249
      ||||||||||||||||||||||||||   |||||||||||||||||||||
seq2  TTAATTTAGAAAAATATAATACATTT--GAAAGCTTTCTTCATTTCAGCA  236

seq1  CATAGGTCTAACTATCTTTTCATTAAGCTTATTTCATTTTCTTCATCAAA  299
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CATAGGTCTAACTATCTTTTCATTAAGCTTATTTCA-TTTCTTCATCAAA  285

seq1  TTTTTTATTTTACAAATATTCTTATGTGTCTTTTTCATTATTGTTAGTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTTTACAAATATTCTTATGTGTCTTTTTCATTATTGTTAGTAT  335

seq1  TAAAGTTAAAGTTCATTGACATTCTGGAAAAGGAATACAAAACTATGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTAAAGTTCATTGACATTCTGGAAAAGGAATACAAAACTATGAAA  385

seq1  AGCTTAGGCTTCAGCTAAGAGAGCCTTGCATCTCAGACAACCAATCATTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGGCTTCAGCTAAGAGAGCCTTGCATCTCAGACAACCAATCATTA  435

seq1  GTATGTTCTATGTGCTATTCCAATGAAAATATAGGGAGGAAATTGTATGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTCTATGTGCTATTCCAATGAAAATATAGGGAGGAAATTGTATGA  485

seq1  CATGATCTCCATCCAGAATTTGATCTGGTAGGCCAAACCCAGGTATACTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCTCCATCCAGAATTTGATCTGGTAGGCCAAACCCAGGTATACTT  535

seq1  AAAATTACTGAGAGTTTAATTCTTTGTTGCTGTTTGTCTTAAGACAATCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACTGAGAGTTTAATTCTTTGTTGCTGTTTGTCTTAAGACAATCT  585

seq1  CTTGGGTTGGAAAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTTGGAAAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCA  635

seq1  GAGTTCCTGAGCTCAATTCCCAGCAGCTACATGGTGGCTCACAACCATCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCTGAGCTCAATTCCCAGCAGCTACATGGTGGCTCACAACCATCT  685

seq1  GTAACCATATGACAGTGTACTCATACTCATTAAATAAATAAACTTTTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCATATGACAGTGTACTCATACTCATTAAATAAATAAACTTTTTTT  735

seq1  TTTGGAAAAAGACAATCTCTTACTTTTTAGTCTAGGCTGGTCACTGATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAAAAAGACAATCTCTTACTTTTTAGTCTAGGCTGGTCACTGATTT  785

seq1  ATGATCACCTTACCAGCATCTCCCTAGTGCTGAGAATATAGGAATATTAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCACCTTACCAGCATCTCCCTAGTGCTGAGAATATAGGAATATTAC  835

seq1  TATATTTTAATACACCTGGTTCTAAAATATACAAGTTTAAGCCTGTTCTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTAATACACCTGGTTCTAAAATATACAAGTTTAAGCCTGTTCTA  885

seq1  AAATATTAGAAATAATACAAATTTAAGCAAGCTCACTGTAAATGATCAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTAGAAATAATACAAATTTAAGCAAGCTCACTGTAAATGATCAGA  935

seq1  GAATTAAAACGTCATAACAAATTAGGTAGCCAGGAGACTTACATATATTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAAACGTCATAACAAATTAGGTAGCCAGGAGACTTACATATATTT  985

seq1  ATTCTAACAGTTCAGTCTATGCAGAATGCACCAAATAGAATTC  1042
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAACAGTTCAGTCTATGCAGAATGCACCAAATAGAATTC  1028