BAC Information

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BAC

Clone NameB6Ng01-165D09
Chromosome1 (Build37)3 (Build37)
Map Location 26,044,008 - 26,044,73641,059,096 - 41,059,737
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC669171, Bai3, LOC665595
Downstream gene4931408C20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165D09.bB6Ng01-165D09.g
ACCDH957331DH957332
length1,010993
definitionDH957331|Mus musculus domesticus DNA, BAC clone: B6Ng01-165D09, 5' end.DH957332|Mus musculus domesticus DNA, BAC clone: B6Ng01-165D09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(26,044,008 - 26,044,736)(41,059,096 - 41,059,737)
sequence
gaattcaatttaatctatcattcaagtactatctcaaggaaaaaacctct
gctgtagcaaaacaaatttaataattttaattatataacattagttaaac
atttgttaaaagtaacagtcactcctccctttggtacctgctatacttta
ttgcatcaaataataacaggtaacagcataaaaagggaaagtcattttga
caagtggtaaatgtgaaaagtcacaccaattttttttaattagatatttt
atttatttacatttcaaatgttatcccatttcctatattccctgataatc
tcccccccctcccactgctccccaacccaccctctcctgcttcctggccc
aggcattaccctatactggggcatagaaccttcacaggaccaaaggcctc
tcttcccattgaagaccaactaggccatcctctgctacatatgcaactag
agccatgagtcccaccatgtgttttctttggttggtagtttagttcctgg
gaaccctggggttactggttacttcatattgctgttcctcctaggtggct
gcaaaccccttcagctccttgggtactttctctagctccttcactgggga
ccctgtgctctgtccaattgatggctgtgagcatccacttctgtacttgt
caggcactgtcagagcctctcagaagacagctatatcaggttcctgtcag
caagctcttgttggcatctgtaatagtgtctgtgtttggttgtagtttat
gggatggatccccaggtcgggcagtttctggatgttcattcctttagtct
ctgctccaaactttgtctctgtaactacttccatgggtatttcatttcca
cacttcagtcttccttctttttaagtttcatgtgttttgcaaatttgtat
ctaaaggcattatagctgctgggctaatatctgcttatcagtgagtacat
atcatgcctattcttttgtgattggattacctcacttaggatgacatgta
tgatatccac
gaattctttgtttagctctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatatatttgatattagtcc
actatctgatttaggatagggaaatattttttcccaatctgttggtgggc
tttttgtcttattgacagtgtcttttgacttacagaagctttgcaatttt
atgtggtcccatttgttgattctcgatcttacagcacaagccattgctgt
tctattcaggaatttttctcctgtgaacatatcttcgaggctttccccca
ctttcttctctataagtttcactgtctctggttttatgtggagttccttg
atccacttagatttgaccttagtacaaggagataggaatggatcaattcg
cattcttctacatgataatcgccagttgtgccagcaccatgtgttttcca
ctgcgtggttttagctcccttatcaaagatcaagtgaccgtaggtgtgtg
ggttcatttctgagtcttcaattctattccattggtctacttgtctgttg
ctataccagtaccatgcagtttttatcacaattgctctgcagtatagctt
taggtcaggcatggtgattcccccagaggttcttttaaccttgagaagag
tttttgctatcctaggttttttttgttattccagatgaatttgcagattg
ctctttctaattcataaaagaattgaattagaattttgatggggattgca
ttgaatgtgttgatagcttttggcaagatagccatttttactatattgat
cctgccaatgagcatgggagatcttcctttttctaaccatgacctctgac
agcttttctttgataaagaatgttgccctcgttttctactgatttattaa
gaaacctatctaccccaaaaaagcatccatatatctgtatatgtcaattt
ccatgtggtatcagtaatgctgtggtttaaatgtaaaatgcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_26044008_26044736
seq2: B6Ng01-165D09.b_45_773

seq1  GAATTCAATTTAATCTATCATTCAAGTACTATCTCAAGGAAAAAACCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTAATCTATCATTCAAGTACTATCTCAAGGAAAAAACCTCT  50

seq1  GCTGTAGCAAAACAAATTTAATAATTTTAATTATATAACATTAGTTAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGCAAAACAAATTTAATAATTTTAATTATATAACATTAGTTAAAC  100

seq1  ATTTGTTAAAAGTAACAGTCACTCCTCCCTTTGGTACCTGCTATACTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTAAAAGTAACAGTCACTCCTCCCTTTGGTACCTGCTATACTTTA  150

seq1  TTGCATCAAATAATAACAGGTAACAGCATAAAAAGGGAAAGTCATTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATCAAATAATAACAGGTAACAGCATAAAAAGGGAAAGTCATTTTGA  200

seq1  CAAGTGGTAAATGTGAAAAGTCACACCAATTTTTTTTAATTAGATATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGTAAATGTGAAAAGTCACACCAATTTTTTTTAATTAGATATTTT  250

seq1  ATTTATTTACATTTCAAATGTTATCCCATTTCCTATATTCCCTGATAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTACATTTCAAATGTTATCCCATTTCCTATATTCCCTGATAATC  300

seq1  TCCCCCCCCTCCCACTGCTCCCCAACCCACCCTCTCCTGCTTCCTGGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCCTCCCACTGCTCCCCAACCCACCCTCTCCTGCTTCCTGGCCC  350

seq1  AGGCATTACCCTATACTGGGGCATAGAACCTTCACAGGACCAAAGGCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTACCCTATACTGGGGCATAGAACCTTCACAGGACCAAAGGCCTC  400

seq1  TCTTCCCATTGAAGACCAACTAGGCCATCCTCTGCTACATATGCAACTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCATTGAAGACCAACTAGGCCATCCTCTGCTACATATGCAACTAG  450

seq1  AGCCATGAGTCCCACCATGTGTTTTCTTTGGTTGGTAGTTTAGTTCCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGAGTCCCACCATGTGTTTTCTTTGGTTGGTAGTTTAGTTCCTGG  500

seq1  GAACCCTGGGGTTACTGGTTACTTCATATTGCTGTTCCTCCTAGGTGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTGGGGTTACTGGTTACTTCATATTGCTGTTCCTCCTAGGTGGCT  550

seq1  GCAAACCCCTTCAGCTCCTTGGGTACTTTCTCTAGCTCCTTCACTGGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCCCTTCAGCTCCTTGGGTACTTTCTCTAGCTCCTTCACTGGGGA  600

seq1  CCCTGTGCTCTGTCCAATTGATGGCTGTGAGCATCCACTTCTGTACTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGCTCTGTCCAATTGATGGCTGTGAGCATCCACTTCTGTACTTGT  650

seq1  CAGGCACTGTCAGAGCCTCTCAGAAGACAGCTATATCAGGTTCCTGTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACTGTCAGAGCCTCTCAGAAGACAGCTATATCAGGTTCCTGTCAG  700

seq1  CAAGCTCTTGTTGGCATCTGTAATAGTGT  729
      |||||||||||||||||||||||||||||
seq2  CAAGCTCTTGTTGGCATCTGTAATAGTGT  729

seq1: chr3_41059096_41059737
seq2: B6Ng01-165D09.g_71_698 (reverse)

seq1  CCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATT  50
      ||||||| |||||||||||||||||||||||||| |||| ||||||||||
seq2  CCTCTGGGGGAATCACCATGCCTGACCTAAAGCTATACTGCAGAGCAATT  50

seq1  GTGATAAAAACTGCATGGTACTGGTATAGTGACAGACAAGCAGACCAATG  100
      |||||||||||||||||||||||||||||  ||||||||| |||||||||
seq2  GTGATAAAAACTGCATGGTACTGGTATAGCAACAGACAAGTAGACCAATG  100

seq1  GAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGA  150
      ||||||||||||||||||||||| ||| ||||||||||| ||||||||||
seq2  GAATAGAATTGAAGACTCAGAAATGAACCCACACACCTACGGTCACTTGA  150

seq1  TCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTC  200
      |||| || ||||||||||||||||  ||||||||                
seq2  TCTTTGATAAGGGAGCTAAAACCACGCAGTGGAA----------------  184

seq1  AACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAAT  250
      |||| |||||||||||||||||||   |||||||||||||||||||||||
seq2  AACACATGGTGCTGGCACAACTGGCGATTATCATGTAGAAGAATGCGAAT  234

seq1  TGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGG  300
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCATTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGG  284

seq1  AACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGG  350
      ||| ||||||||||||||||||| |||||||||||||| |||||||||||
seq2  AACTCCACATAAAACCAGAGACAGTGAAACTTATAGAGAAGAAAGTGGGG  334

seq1  AAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGC  400
       ||||||| ||||||||| ||||||| |||||||||||| ||||||||||
seq2  GAAAGCCTCGAAGATATGTTCACAGGAGAAAAATTCCTGAATAGAACAGC  384

seq1  AATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAAC  450
      |||||||||||||||||||| ||||||  |||||||||||| ||| ||| 
seq2  AATGGCTTGTGCTGTAAGATCGAGAATCAACAAATGGGACCACATAAAAT  434

seq1  TGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG-GCA  499
      ||||||||||||| ||| |||||||||| |||||||||||||||||  ||
seq2  TGCAAAGCTTCTGTAAGTCAAAAGACACTGTCAATAAGACAAAAAGCCCA  484

seq1  CCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACT  549
      ||||||||||||||||  || ||| ||||||||||||||||||| |||||
seq2  CCAACAGATTGGGAAAAAATATTTCCCTATCCTAAATCAGATAGTGGACT  534

seq1  AATATCCA--ATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATC  597
      |||||| |  |||||||| ||||||||||||||||||| |||||||||||
seq2  AATATCAAATATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAAATC  584

seq1  AAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  642
      ||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAATAACCCCATT-AAAAATGGGGCTCAGAGCTAAACAAAGAATT  628