BAC Information

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BAC

Clone NameB6Ng01-165E16
Chromosome3 (Build37)
Map Location 23,936,013 - 23,937,071
singlet/doubletsinglet
Overlap geneEG635702
Upstream geneLOC623751, LOC100039548
Downstream geneEG665189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165E16.bB6Ng01-165E16.g
ACCDH957389DH957390
length1,1861,064
definitionDH957389|Mus musculus domesticus DNA, BAC clone: B6Ng01-165E16, 5' end.DH957390|Mus musculus domesticus DNA, BAC clone: B6Ng01-165E16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggaatactgaaaaaatgttgaaca
tccttaatcatcagagaaattcaaatcaaaacaaccctgagattccatct
cacaccagtcagaatggctaagatcaaaaattcaggtgacagcagatact
ggtgaggatgtggagaaagaggaacactcctccattgttggtgggattgc
aagcttgtacaaccactctggaaatcagtctggcggttcctcagaaaatt
ggacttagtaatactggaggatcccgcagtacctctcctgggcatatatc
cagatgatgttccaaccagtacgaatgacacatgctccattatgttcata
gaagccttatttataatagccagaagctagaaagaacccagatgcacctc
aacagagaaatggatacagaaaatgtggtacatttacacaatggagtact
acacagctattaaaatgaatgaatttatgaaattcataggtaaatggata
gatgtggagggcatcatcctgagtgaggtaacccaatcaaaagaactcac
acaatatgttctcactgataagtggatattagtccagaaacttagaatac
ccaagatataagatacaatttgtaaaacacaggaaactcaagaagaagga
agactaaagtgtgggcactttgccccttcttagaattgggaacaaaacac
ccatggaaggagttacagaaacaaagtttggagctgagacaaaaggatgg
accatctagaaattgccatatgggggtatccatcacataatcagcttcca
aaggctcaaaccactgcatacactagcaagattttgctgaaaagacccag
atatagctgcttcttgtgagactatgctgggacctagcaaacacagaagt
ggatgctctcacagtcatctactcgatggatcacagggccccaatggagg
agctagagaaattattccaggagctaaatggatctggaaccctataggtg
gacaacatatggactaaccagtacccccagagcttgtggtctctaactgc
atatgtatcataaggatggtctgtcgcaatcagtggaagagagagaccca
ttggtctggcaaactttatagcctcaattacaagggaatgtcaggtctag
aagttcaagtggggtgggtggggaagaatcttgctg
gaattctttatgccttccttgatgttcaaagttaatcattgtatgaaaaa
gctttctggaaacctcatctgaatcatctctgcatgtgtttccccccata
aaatcatatgtatgagtttgggagtgaagtcttcagtgtcttttattagg
atccaattcacagtataatgacacatcactatgctaatggtatgaagtgt
ctgaattggtaatctctctaatgttgcattcatagaagttcaaaggatcc
cattagtgtcatatagggtctgtcatttctagattacttcatttactctc
ttaatatagatttagaacacttgatgtcaaatttcctgcttgttttgcaa
taactttatcagtgtgtcagaaggctgagatgaaatatccaagcacttct
agtcgacatactgttcatgtgtttttgttttgttttgttttgttttgttt
tgttttcaaaaatctggattcattagtctgggtgattgtctaatcacatt
tccatgcaatattccatagtggtcattgatcttaaaaaaaaaaatagagt
ctcatttattatggttccagatgctcacttacttattatagtttagattc
aatcatgatgataataaactaaatgaagttaaattatactatcttagaga
gaaattttatctaatttgtaactctagccttttacagaagacattccttt
atacaatatagagacagatattgtgaccataacattattttggatgtttg
ttatcttcttttataatatgaacaagcactcctttgtttttaatgatatt
tttgagcatgtccagacagaacatttaaaaaaatgctgtggaaactgact
tccagcaacatgacagggacactgatgctattacaaacattatcaatttg
ttttaggaaagtgtatagtgtacattagtatgaaatctctctagatttaa
aattatttattggtaattttaattccacttatgcattttttatgctagct
gtccagaagctatactttggaatggcttacagaacttttaattttaaccg
cctaagtcataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_23936013_23937071
seq2: B6Ng01-165E16.g_66_1129 (reverse)

seq1  TTTTATGACTTAGGCGG-TAAAAATAAATGTTCTGTAAGCCA-TCCAAAG  48
      ||||||||||||||||| ||||| |||| ||||||||||||| |||||||
seq2  TTTTATGACTTAGGCGGTTAAAATTAAAAGTTCTGTAAGCCATTCCAAAG  50

seq1  T-TAGCTTCTGGACAGCTAGCATAAAATATTGCAT-AGTGAATTTATATA  96
      | ||||||||||||||||||||||||| | ||||| |||| | ||| |  
seq2  TATAGCTTCTGGACAGCTAGCATAAAA-AATGCATAAGTGGAATTAAAAT  99

seq1  TACCAATAAATAATTTTTAAATCTAGAGAGATTTCATACTAATGTACACT  146
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TACCAATAAATAA-TTTTAAATCTAGAGAGATTTCATACTAATGTACACT  148

seq1  ATAACACTTTCCTAAAACAAATTGATAATGTTTGTAATAGCATCAGTGTC  196
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AT-ACACTTTCCTAAAACAAATTGATAATGTTTGTAATAGCATCAGTGTC  197

seq1  CCTGTCATGTTGCTGGAAGTCAGTTTCCACAGCATTTTTTTAAATGTTCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCATGTTGCTGGAAGTCAGTTTCCACAGCATTTTTTTAAATGTTCT  247

seq1  GTCTGGACATGCTC-AAAATATCATTAAAAACAAAGGAGTGCTTGTTCAT  295
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTCTGGACATGCTCAAAAATATCATTAAAAACAAAGGAGTGCTTGTTCAT  297

seq1  ATTAT-AAAGAAGATAAC-AACATCC-AAATAATGTTATGGTCACAATAT  342
      ||||| |||||||||||| ||||||| |||||||||||||||||||||||
seq2  ATTATAAAAGAAGATAACAAACATCCAAAATAATGTTATGGTCACAATAT  347

seq1  CTGTCTCTATATTGTATAAAGGAATGTCTTCTGTAAAAGGCTAGAGTTAC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTATATTGTATAAAGGAATGTCTTCTGTAAAAGGCTAGAGTTAC  397

seq1  AAATTAGATAAAATTTCTCTCTAAGATAGTATAATTTAACTTCATTTAGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGATAAAATTTCTCTCTAAGATAGTATAATTTAACTTCATTTAGT  447

seq1  TTATTATCATCATGATTGAATCTAAACTATAATAAGTAAGTGAGCATCTG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATCATCATGATTGAATCTAAACTATAATAAGTAAGTGAGCATCTG  497

seq1  GAACCATAATAAATGAGACTCTATTTTTTTTTTTAAGATCAATGACCACT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATAATAAATGAGACTCTATTTTTTTTTTTAAGATCAATGACCACT  547

seq1  ATGGAATATTGCATGGAAATGTGATTAGACAATCACCCAGACTAATGAAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATATTGCATGGAAATGTGATTAGACAATCACCCAGACTAATGAAT  597

seq1  CCAGATTTTTGAAAACAAAACAAAACAAAACAAAACAAAACAAAAACACA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTTTTGAAAACAAAACAAAACAAAACAAAACAAAACAAAAACACA  647

seq1  TGAACAGTATGTCGACTAGAAGTGCTTGGATATTTCATCTCAGCCTTCTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGTATGTCGACTAGAAGTGCTTGGATATTTCATCTCAGCCTTCTG  697

seq1  ACACACTGATAAAGTTATTGCAAAACAAGCAGGAAATTTGACATCAAGTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTGATAAAGTTATTGCAAAACAAGCAGGAAATTTGACATCAAGTG  747

seq1  TTCTAAATCTATATTAAGAGAGTAAATGAAGTAATCTAGAAATGACAGAC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAATCTATATTAAGAGAGTAAATGAAGTAATCTAGAAATGACAGAC  797

seq1  CCTATATGACACTAATGGGATCCTTTGAACTTCTATGAATGCAACATTAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATATGACACTAATGGGATCCTTTGAACTTCTATGAATGCAACATTAG  847

seq1  AGAGATTACCAATTCAGACACTTCATACCATTAGCATAGTGATGTGTCAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTACCAATTCAGACACTTCATACCATTAGCATAGTGATGTGTCAT  897

seq1  TATACTGTGAATTGGATCCTAATAAAAGACACTGAAGACTTCACTCCCAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGTGAATTGGATCCTAATAAAAGACACTGAAGACTTCACTCCCAA  947

seq1  ACTCATACATATGATTTTATGGGGGGAAACACATGCAGAGATGATTCAGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATACATATGATTTTATGGGGGGAAACACATGCAGAGATGATTCAGA  997

seq1  TGAGGTTTCCAGAAAGCTTTTTCATACAATGATTAACTTTGAACATCAAG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTTCCAGAAAGCTTTTTCATACAATGATTAACTTTGAACATCAAG  1047

seq1  GAAGGCATAAAGAATTC  1059
      |||||||||||||||||
seq2  GAAGGCATAAAGAATTC  1064