BAC Information

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BAC

Clone NameB6Ng01-165E20
Chromosome3 (Build37)
Map Location 117,331,928 - 117,332,899
singlet/doubletsinglet
Overlap gene4833424O15Rik
Upstream geneSass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e
Downstream geneEG668759, Snx7, LOC100043260, Dpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165E20.bB6Ng01-165E20.g
ACCDH957397DH957398
length855949
definitionDH957397|Mus musculus domesticus DNA, BAC clone: B6Ng01-165E20, 5' end.DH957398|Mus musculus domesticus DNA, BAC clone: B6Ng01-165E20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccatttagttctatacctcattatttgataggattgtttcagt
ttctggtagttagcttcttgagttctttatatattttggatattagccct
ctatcaaatgtggggttagtgaagattttttcccaatctgcaggttgcca
atttgtcttattaactatgtcctttgtcttacagaagctttccagtttca
tgagatcccatttattaattcttgatcttatagcatgagccattgaagtt
ctatttaagaaattttcctctgtgccaatgagttcaaggttctttcccac
tttttcttctattaatttagtgtttctggttttatgttgaggtccttgat
ccacttggacttactcttcgtgcaaggtgacaaatatgggtctattttca
tttttccacatactgacagatggttagaccagcaccatttattgaagaca
ctttcttttatccgttgtatatttttggcttctttgtcaaagattaagtg
tccataagtgtgtggttttatttctgggtcttcaattctattccattgat
caatgtgtctgtctctggaccaataccatgcagtttttatcactattgct
ctgtagtaaagcttgaggtcagggatggtgagtcccccctcccccaagct
gttcttttattgttaagaattgtcttcactattctgtttttttttttttc
cttttcagatgatttgagaattgctcttttcatgtctttgaagaattgtg
tgggattttgatggggatgcatgaatctgtagaatgcttgtagatgccat
ttaactttgttaattctgcaatcatggaggatgggagatctctcatttct
gagaa

gaattccctggagctggagttatgggatggttatgaatcaccatgtgggt
attgagaattacattcaggttcttacactctgtgagagcagccaatgctc
ctaaccactgagccatctttcccacccccttattataattagttttatga
caagaaaaaattaaggtcatatttgaaggttaccaaaaaatcttagagca
tgcttttctgtttcaaattgtatgggtgtaccagaaattcatcaaacatg
gtctttcgatcttaactttgaaggtttttttttttttttgcttgcttgct
tttaatttgaaaactcatgaccagaaagctaaatttaaagattattctag
tagaatttagcactcaattagaaatttgagaactgagggttaaataactt
atggattattccctcaaccagggaaactaatagcatttgtgaaaaatagg
attagggatttttccctctataacttcttagtaaagcaaaagaaatatct
acagtcaaattatccctgaaagccttaatttaagtcagatcctaagagag
aattcaaattccttggtttatgctaagccacacagtgaagcatcaaacaa
atattccttagttcattttcaaatactggcatcactttattcatatgcgt
tcacatatgacctaacattaagaaaacaaatctctacaccagatcatgag
atgatttcataaagaatactgctcagaaggccattctttcttaaatacct
acctgtaaacttcttgcaatcgttctatggccaaaattatttggaaacac
cccagcttttttattatgaaatttcccaaggtgtcactatgatctggcaa
attattcgtatataggtccaatatatgcaaccctggactggatctgtttg
cgacgaggattattcagagttgcatagcagcacccaattctctccacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_117331928_117332899
seq2: B6Ng01-165E20.g_67_1015 (reverse)

seq1  GTGTGAGAGAGAATGTGGGTGGCTGCTATGGCAACTCTGAATATAACTCC  50
      ||||| |||||||| ||||| |||||||| |||||||||||||   ||| 
seq2  GTGTG-GAGAGAAT-TGGGT-GCTGCTAT-GCAACTCTGAATAATCCTC-  45

seq1  TGCTGCAAACACAGGATTTCCAGTCAGGGTTTGCCATTATAT-TTGAACT  99
       |  ||||||| |     |||||||  || ||||    |||| ||| || 
seq2  -GTCGCAAACAGA-----TCCAGTCCAGGGTTGC----ATATATTGGACC  85

seq1  TATATACGAATGTATTTTGCCCCAGATTCACTAGTGACACCTTGGGAAAA  149
      ||||||||||  || ||||  ||||| ||| ||||||||||||||| |||
seq2  TATATACGAA--TAATTTG--CCAGA-TCA-TAGTGACACCTTGGG-AAA  128

seq1  TTTCATAATAAAAAAGCT-GGGTGTTTCAAAATAATTTGGCCCCATAGAA  198
      |||||||||||||||||| ||||||||| ||||||||| |  ||||||||
seq2  TTTCATAATAAAAAAGCTGGGGTGTTTCCAAATAATTTTG-GCCATAGAA  177

seq1  CGATTGCCAGAAGTTTAACAGGTAGGTATTTAGGAAAGAATGGCCTTCTG  248
      ||||||| |||||||| ||||||||||||||| |||||||||||||||||
seq2  CGATTGCAAGAAGTTT-ACAGGTAGGTATTTAAGAAAGAATGGCCTTCTG  226

seq1  AGCAGTATTCTTTATGAAAATCATCTCATGATCTGGTGTAGAGATTTGTT  298
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGCAGTATTCTTTATG-AAATCATCTCATGATCTGGTGTAGAGATTTGTT  275

seq1  TTCTTAATGTTAGGTCATATGTGAACGCATATGAATAAAGTGATGCCAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAATGTTAGGTCATATGTGAACGCATATGAATAAAGTGATGCCAGT  325

seq1  ATTTGAAAATGAACTAAGGAATATTTGTTTGATGCTTCACTGTGTGGCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAAATGAACTAAGGAATATTTGTTTGATGCTTCACTGTGTGGCTT  375

seq1  AGCATAAACCAAGGAATTTGAATTCTCTCTTAGGATCTGACTTAAATTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAACCAAGGAATTTGAATTCTCTCTTAGGATCTGACTTAAATTAA  425

seq1  GGCTTTCAGGGATAATTTGACTGTAGATATTTCTTTTGCTTTACTAAGAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCAGGGATAATTTGACTGTAGATATTTCTTTTGCTTTACTAAGAA  475

seq1  GTTATAGAGGGAAAAATCCCTAATCCTATTTTTCACAAATGCTATTAGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAGAGGGAAAAATCCCTAATCCTATTTTTCACAAATGCTATTAGTT  525

seq1  TCCCTGGTTGAGGGAATAATCCATAAGTTATTTAACCCTCAGTTCTCAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGTTGAGGGAATAATCCATAAGTTATTTAACCCTCAGTTCTCAAA  575

seq1  TTTCTAATTGAGTGCTAAATTCTACTAGAATAATCTTTAAATTTAGCTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATTGAGTGCTAAATTCTACTAGAATAATCTTTAAATTTAGCTTT  625

seq1  CTGGTCATGAGTTTTCAAATTAAAAGCAAGCAAGCAAAAAAAAAAAAAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCATGAGTTTTCAAATTAAAAGCAAGCAAGCAAAAAAAAAAAAAAA  675

seq1  CCTTCAAAGTTAAGATCGAAAGACCATGTTTGATGAATTTCTGGTACACC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAAAGTTAAGATCGAAAGACCATGTTTGATGAATTTCTGGTACACC  725

seq1  CATACAATTTGAAACAGAAAAGCATGCTCTAAGATTTTTTGGTAACCTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAATTTGAAACAGAAAAGCATGCTCTAAGATTTTTTGGTAACCTTC  775

seq1  AAATATGACCTTAATTTTTTCTTGTCATAAAACTAATTATAATAAGGGGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGACCTTAATTTTTTCTTGTCATAAAACTAATTATAATAAGGGGG  825

seq1  TGGGAAAGATGGCTCAGTGGTTAGGAGCATTGGCTGCTCTCACAGAGTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGATGGCTCAGTGGTTAGGAGCATTGGCTGCTCTCACAGAGTGT  875

seq1  AAGAACCTGAATGTAATTCTCAATACCCACATGGTGATTCATAACCATCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCTGAATGTAATTCTCAATACCCACATGGTGATTCATAACCATCC  925

seq1  CATAACTCCAGCTCCAGGGAATTC  972
      ||||||||||||||||||||||||
seq2  CATAACTCCAGCTCCAGGGAATTC  949


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