BAC Information

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BAC

Clone NameB6Ng01-165G01
Chromosome3 (Build37)
Map Location 133,635,844 - 133,637,010
singlet/doubletsinglet
Overlap geneLOC100039168
Upstream geneGstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik, EG620205
Downstream geneLOC668862, LOC100039199, Cxxc4, Ppia-ps3_1390.1, LOC100039234, Tacr3, LOC229837
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165G01.bB6Ng01-165G01.g
ACCDH957451DH957452
length1,1741,207
definitionDH957451|Mus musculus domesticus DNA, BAC clone: B6Ng01-165G01, 5' end.DH957452|Mus musculus domesticus DNA, BAC clone: B6Ng01-165G01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctactttggctgaatgaccctgaatgagaatccttctactggcca
acatccatgattcagagtaggtctgaagacagggtcaaagggctgtgaac
catgtgaaatgaaatcgccagtgtgtgcatggagagttttacggtgtgtg
ctctactgaaagccaagctgcacactacaaagaaaaccactaggaaagga
ggtagaagcagttttacaaaaaaagtctttgaacagcaggaaggtgcagc
atttattgtgaaggactccaaaggcaaaggcatccatggggatgctgtgt
tattttaaaatcaacataactgcaacttatgaatgaacagtaaggtaaag
gcaagtgcagaaaccagaccagagaaagattcatatttacatgcaaggaa
aagcacagctgcagaaatagctgttccacgttgccaattgtttgcactaa
atgctcatctgtatatgaatttctttctcattcttcgaaagggtgaggct
gtcagagaggaaatacaattttcagtctctgagatcttaaaagacggata
ctccatttccaaaagaattgtatttgtaaaataataacgcttcaaacttt
agtaaagtttatttttgtatgaaaaaattcagggtttggaaagaaacatt
aaaattgtgcacaaaattatcctccttggtgtcatttatataatcattgt
gtttggatttatggcaagtatcactactgggtcatcagatttatgcagct
cacaaatccatagaaggtaaggctgaagagatgacaccatgttaatgagg
atttgcctctttttgcagggagcaggcactgtgtagcagctgattcctgc
ctgattcctcaatttccaggagatacaatagctttattctaatgtctatt
ggtaccaagaacacatgaggtacacaaacatacaacacacaaacacacac
atatatatacacacacacaccattaagtaaataaataaatctaaatactt
tttaaaagcacaagagaagtaaatacagaatagctttctttggtaataca
ttaaaaaataaaataagcttcgaagctatgtatctaaatggaataatagg
acctcctccttataacaggataacagtcttttttaaacatttttaaaaag
gtcaattctatgtaattaactgtc
gaattcagaaatctacaattctatgtctgtttgttcttttggacagaatt
ttgtctatagatgaaggtagggcacttctttcccagtagttagctttcca
caattgaagcaactctatatggaagctattgatgctcatattttctttaa
agtgtaatggggtattgtcaggggcatattaggactaaaacttgtatttt
taaataagttgcatatgcctaacacctatctaagagttgaaacctacatc
tgttatgttatgttatgacaaatttaatcttaaaatttgtatcaatataa
aaggattcataccaatgaaaactttaaacctgtatcaatatacaaaattc
tgtaccaatgtaagaaaatattctgcatcaaaatataaaaatctctacca
atgtaagattatggttataaaatgtttttttggtttaagagtagattcaa
taattttctaatttcttataatatttttatatcccctaattttcttttga
actcccgtccctttatctaagagaggaagaaggaaaaagaaaaggaaaga
tagaaacccctgagtctaagttccatatttagtttctctactgtctaagg
ccaaaattatttgtaaagtatcccttaaaataataacatatgtataactt
ataaaatgagcaaaccatcctccccaatgcaagggactgggacaatggtc
ttatgattgcttcctgctgaattgtagccaagaatttattttggggggac
ccaaaatgaaattagaaaaacggttagtcttaataaagctggctataacc
attttgttgtccagtctgtatgtgctgagaaaattcagggtttaactgaa
gccctgagtggaacagtttgagaggctagataagctgacatcatctggga
tagctgtcctttctaaagctgttttagaagcaagtctctggaaacagcaa
caatttgatgcaagatcaagcaggtagttggaacagcagcaggtcttatc
acctcagcaccctcaaggatgaatctgtcagggctgccctccctgttttt
tcctttctgcataaaataacataaacttttacaggcatagaaaagctctt
ttaaaggacatttgttttgggactctgtccaggggtgctcagagttaatt
agaatattcctgttctttgtgttggaggagggggaaaagaaacttctttt
ctcggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_133635844_133637010
seq2: B6Ng01-165G01.b_48_1221

seq1  GAATTCTACTTTGGCTGAATGACCCTGAATGAGAATCCTTCTACTGGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACTTTGGCTGAATGACCCTGAATGAGAATCCTTCTACTGGCCA  50

seq1  ACATCCATGATTCAGAGTAGGTCTGAAGACAGGGTCAAAGGGCTGTGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCATGATTCAGAGTAGGTCTGAAGACAGGGTCAAAGGGCTGTGAAC  100

seq1  CATGTGAAATGAAATCGCCAGTGTGTGCATGGAGAGTTTTACGGTGTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAAATGAAATCGCCAGTGTGTGCATGGAGAGTTTTACGGTGTGTG  150

seq1  CTCTACTGAAAGCCAAGCTGCACACTACAAAGAAAACCACTAGGAAAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTGAAAGCCAAGCTGCACACTACAAAGAAAACCACTAGGAAAGGA  200

seq1  GGTAGAAGCAGTTTTACAAAAAAAGTCTTTGAACAGCAGGAAGGTGCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAAGCAGTTTTACAAAAAAAGTCTTTGAACAGCAGGAAGGTGCAGC  250

seq1  ATTTATTGTGAAGGACTCCAAAGGCAAAGGCATCCATGGGGATGCTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTGTGAAGGACTCCAAAGGCAAAGGCATCCATGGGGATGCTGTGT  300

seq1  TATTTTAAAATCAACATAACTGCAACTTATGAATGAACAGTAAGGTAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAAATCAACATAACTGCAACTTATGAATGAACAGTAAGGTAAAG  350

seq1  GCAAGTGCAGAAACCAGACCAGAGAAAGATTCATATTTACATGCAAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGCAGAAACCAGACCAGAGAAAGATTCATATTTACATGCAAGGAA  400

seq1  AAGCACAGCTGCAGAAATAGCTGTTCCACGTTGCCAATTGTTTGCACTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAGCTGCAGAAATAGCTGTTCCACGTTGCCAATTGTTTGCACTAA  450

seq1  ATGCTCATCTGTATATGAATTTCTTTCTCATTCTTCGAAAGGGTGAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCATCTGTATATGAATTTCTTTCTCATTCTTCGAAAGGGTGAGGCT  500

seq1  GTCAGAGAGGAAATACAATTTTCAGTCTCTGAGATCTTAAAAGACGGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGAGGAAATACAATTTTCAGTCTCTGAGATCTTAAAAGACGGATA  550

seq1  CTCCATTTCCAAAAGAATTGTATTTGTAAAATAATAACGCTTCAAACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTTCCAAAAGAATTGTATTTGTAAAATAATAACGCTTCAAACTTT  600

seq1  AGTAAAGTTTATTTTTGTATGAAAAAATTCAGGGTTTGGAAAGAAACATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGTTTATTTTTGTATGAAAAAATTCAGGGTTTGGAAAGAAACATT  650

seq1  AAAATTGTGCACAAAATTATCCTCCTTGGTGTCATTTATATAATCATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGTGCACAAAATTATCCTCCTTGGTGTCATTTATATAATCATTGT  700

seq1  GTTTGGATTTATGGCAAGTATCACTACTGGGTCATCAGATTTATGCAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGATTTATGGCAAGTATCACTACTGGGTCATCAGATTTATGCAGCT  750

seq1  CACAAATCCATAGAAGGTAAGGCTGAAGAGATGACACCATGTTAATGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATCCATAGAAGGTAAGGCTGAAGAGATGACACCATGTTAATGAGG  800

seq1  ATTTGCCTC-TTTTGCAGGGGAGCAGGCACTGTGTAGCAGCTGATTCCTG  849
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  ATTTGCCTCTTTTTGCA-GGGAGCAGGCACTGTGTAGCAGCTGATTCCTG  849

seq1  CCTGATTCCTCAATTTCCAGGAGATACAATAGC-TTATTCTAATGTCTAT  898
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCTGATTCCTCAATTTCCAGGAGATACAATAGCTTTATTCTAATGTCTAT  899

seq1  TGGTACCAAGAACACATGAGGTACACAAACATACAACACACAAACACACA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACCAAGAACACATGAGGTACACAAACATACAACACACAAACACACA  949

seq1  CATATATATACACACACACACCATAAAGTAAATAAATAAATCTAAAATAC  998
      |||||||||||||||||||||||| |||||||||||||||||| ||||||
seq2  CATATATATACACACACACACCATTAAGTAAATAAATAAATCT-AAATAC  998

seq1  TTTTTAAAAGCACAAGAG-AGTAAATACAG-ATAGCTTTCTTTGGT-ATA  1045
      |||||||||||||||||| ||||||||||| ||||||||||||||| |||
seq2  TTTTTAAAAGCACAAGAGAAGTAAATACAGAATAGCTTTCTTTGGTAATA  1048

seq1  CATT-AAAAATAAAATATGCTTCGAAGCTATGTATCTAAATGAATTATTT  1094
      |||| |||||||||||| |||||||||||||||||||||||| | || | 
seq2  CATTAAAAAATAAAATAAGCTTCGAAGCTATGTATCTAAATGGAATAATA  1098

seq1  AGAC-----TCTCATATACAGTATAACAATCTTTTTTTAAAACATTTTTA  1139
       |||      || ||| |||| |||||| ||||||||  |||||||||||
seq2  GGACCTCCTCCTTATA-ACAGGATAACAGTCTTTTTT--AAACATTTTTA  1145

seq1  AAAA-GTCAATTC-ATGTAATTAAACTGTC  1167
      |||| |||||||| |||||||| |||||||
seq2  AAAAGGTCAATTCTATGTAATT-AACTGTC  1174