BAC Information

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BAC

Clone NameB6Ng01-165H18
Chromosome3 (Build37)
Map Location 109,832,272 - 109,967,284
singlet/doubletdoublet
Overlap geneNtng1, LOC100043181
Upstream geneB430201A12Rik, 4930443G12Rik, Slc25a24, Vav3
Downstream geneLOC100043183, Prmt6, LOC100043190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165H18.bB6Ng01-165H18.g
ACCDH957530DH957531
length1,1711,131
definitionDH957530|Mus musculus domesticus DNA, BAC clone: B6Ng01-165H18, 5' end.DH957531|Mus musculus domesticus DNA, BAC clone: B6Ng01-165H18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,966,109 - 109,967,284)(109,832,272 - 109,833,409)
sequence
gaattccattgttttgttcatcaggaatcctattgttcagttaactctgg
gtatctgtgtaattgggttgtagataccactctgaacaccaaaattttca
gatggtgaagttccttatataaaaaggtatagtaattatttaaaaccctg
agagcaccttttcatatactttatattatctctcaattcctgataatagt
taatataatataagtggtatgtaaataattatcatattgtgttgttcagt
tggtaataatagcaaaacagcccatatactcaatacagaggcatttttcc
ctaaatatttctttctatgtaattggctgactccatagaggggttaacta
agcataactcaaaagtagacaaatgctttaactcggtcagcaaggctaga
aatatcctcagtttcaacaattgctagttagttattcacgagagagtgaa
atttttcatgcacttgtggttttacatcaaaatattctagaagcaattag
cagtcaacatttattgagtgcctacaaggaatgaagcacaagaactgtgg
cttgggagctagatgttgctaccccaattcacagatatgggctggggaga
gccaaagatataaagcaaaagaattgggatagtgtcagtggcaagtggcc
aatgatgggcatatttggcttcagagcttgcgccttagctggattctctg
cactcatagcttcccaaaatgttctccttaacatatgctggataaatctg
ctcaaatgaagcccttagtcagagaaagtaggggaatagaaatctggtca
ttggcagtgggcagtaaaggataaagatatgctgttcctgtgtaattctg
tatttgtatgtgcactagcccatgtgtgtgaaggtcatcgtgtgctgtgc
ccatggaagtcagagatcaaccctgcgtatattgacttaagttgacccat
attatttctttctttgtcctggaacttgaaagaagtctaggctggctggg
cagcacgttccaggactgtctctgtctctccagcttttggattcagttca
tatgtcacggttgtggctcccccatcccagggaaatcaactgaacctaga
atttcattgcctgcattcgagcatttaactggaattaaactacttgctta
aacggtttaaattcagaatct
gaattcctcagcttcccctccctctaacacgctattcattactgagctcc
caagatgtgaaagacgaacacttctgggtcttttttgatatagttttgag
aaagtactgttagctaacaaatccagcccataataaatcttctttattta
ctgcccacctggctgtagctctatcaggatcagcaggagaaaaggataaa
atcttatcagtgaactgcgctgacaccacatgcaatttccttttcaggac
ttgggggacgtgaattgcacactagttctttcagactcccaagtgacagt
tgcattttccagggtgatgtgcactgtccagaaggagctgtttaactaag
gctttgccgtcctctcttcattctttacctgattcagaaaagctgtgaat
ggcatgaagaacattcaagatagggaggcggacagagagacagaggttga
gcagtgggactcaaaggggaagggaaaaataagaaacctcagaaatatca
caatacctgaaaccacccaaaataatggtttatttattccgtatgagaaa
ctgaaaacagggagtgcagaaactctactttatagcacagactcacacaa
tggcagtctacattaaagaatgaaagagaccctattatttccaagacagc
agccctggtttggtgcagcagatgtgggaacacaatagaagacacatcat
gtagcccactgctgggggtgcacttgggaaaccaaattgtcaagctttca
catattttcagatcagtagctttggaagttacagcaacatgaagcagact
agtacaaactttttaagttttgaactatttggatacaactttgtgaacac
agtataaacaaatgacttatgactttataggcaattactcaaatccatac
atgaggataatatcctgaatataagttgcatagtaagttaactttcaaat
ttactttgtgtcaaactgtttcaatcttttagtattataaacatgatttc
aatggtggtcattctgataaatagtttatctccatgtttgctagcaaatg
ccaatattatacaaaataaaactaaggttaataatgtggttattgatctc
cttatctcactaatcaaatgtgtgtctagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_109966109_109967284
seq2: B6Ng01-165H18.b_45_1215 (reverse)

seq1  AGATTCTGAATTTTAAAAACTGTTTAAAGCAGTAGTTTAAT--CAGTTAA  48
      |||||||||||||   |||| ||||||   |||||||||||  |||||||
seq2  AGATTCTGAATTT---AAACCGTTTAAGCAAGTAGTTTAATTCCAGTTAA  47

seq1  ATGCTTTCG-ATGCAAGC-ATGAAA-TCTAAGTTCAGTTGATCTCCTTGG  95
      ||||  ||| ||||| || |||||| |||| ||||||||||| ||| |||
seq2  ATGC--TCGAATGCAGGCAATGAAATTCTAGGTTCAGTTGATTTCCCTGG  95

seq1  GATTGGGGGAGCCACAAACGGTGACATATGACTTGAATCCAAAAGCTGGA  145
      || |||||||||||| ||| |||||||||||  |||||||||||||||||
seq2  GA-TGGGGGAGCCAC-AACCGTGACATATGAACTGAATCCAAAAGCTGGA  143

seq1  GAGACAGAGACAGTTCCTGGGACGTGCTGCCCAGCCAGCCTAGACTTCTT  195
      ||||||||||||| |||||| ||||||||||||||||||||||||||| |
seq2  GAGACAGAGACAG-TCCTGGAACGTGCTGCCCAGCCAGCCTAGACTTC-T  191

seq1  TTCAAGTTCCAGGACAAAAGAAAGAAATAATATGGGTCAACCTTAAGTCA  245
      ||||||||||||||| |||||||||||||||||||||||| |||||||||
seq2  TTCAAGTTCCAGGAC-AAAGAAAGAAATAATATGGGTCAA-CTTAAGTCA  239

seq1  ATATACGCAGGGTTGATCTCTGACTTCCATGGGCACAGCACACGATGACC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACGCAGGGTTGATCTCTGACTTCCATGGGCACAGCACACGATGACC  289

seq1  TTCACACACATGGGCTAGTGCACATACAAATACAGAATTACACAGGAACA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACACATGGGCTAGTGCACATACAAATACAGAATTACACAGGAACA  339

seq1  GCATATCTTTATCC-TTACTGCCCACTGCCAATGACCAGATTTCTATTCC  394
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCATATCTTTATCCTTTACTGCCCACTGCCAATGACCAGATTTCTATTCC  389

seq1  CCTACTTTCTCTGACTAAGGGCTTCATTTGAGCAGATTTATCCAGCATAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTTTCTCTGACTAAGGGCTTCATTTGAGCAGATTTATCCAGCATAT  439

seq1  GTTAAGGAGAACATTTTGGGAAGCTATGAGTGCAGAGAATCCAGCTAAGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGGAGAACATTTTGGGAAGCTATGAGTGCAGAGAATCCAGCTAAGG  489

seq1  CGCAAGCTCTGAAGCCAAATATGCCCATCATTGGCCACTTGCCACTGACA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAGCTCTGAAGCCAAATATGCCCATCATTGGCCACTTGCCACTGACA  539

seq1  CTATCCCAATTCTTTTGCTTTATATCTTTGGCTCTCCCCAGCCCATATCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCCAATTCTTTTGCTTTATATCTTTGGCTCTCCCCAGCCCATATCT  589

seq1  GTGAATTGGGGTAGCAACATCTAGCTCCCAAGCCACAGTTCTTGTGCTTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTGGGGTAGCAACATCTAGCTCCCAAGCCACAGTTCTTGTGCTTC  639

seq1  ATTCCTTGTAGGCACTCAATAAATGTTGACTGCTAATTGCTTCTAGAATA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTGTAGGCACTCAATAAATGTTGACTGCTAATTGCTTCTAGAATA  689

seq1  TTTTGATGTAAAACCACAAGTGCATGAAAAATTTCACTCTCTCGTGAATA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATGTAAAACCACAAGTGCATGAAAAATTTCACTCTCTCGTGAATA  739

seq1  ACTAACTAGCAATTGTTGAAACTGAGGATATTTCTAGCCTTGCTGACCGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACTAGCAATTGTTGAAACTGAGGATATTTCTAGCCTTGCTGACCGA  789

seq1  GTTAAAGCATTTGTCTACTTTTGAGTTATGCTTAGTTAACCCCTCTATGG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGCATTTGTCTACTTTTGAGTTATGCTTAGTTAACCCCTCTATGG  839

seq1  AGTCAGCCAATTACATAGAAAGAAATATTTAGGGAAAAATGCCTCTGTAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCCAATTACATAGAAAGAAATATTTAGGGAAAAATGCCTCTGTAT  889

seq1  TGAGTATATGGGCTGTTTTGCTATTATTACCAACTGAACAACACAATATG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATATGGGCTGTTTTGCTATTATTACCAACTGAACAACACAATATG  939

seq1  ATAATTATTTACATACCACTTATATTATATTAACTATTATCAGGAATTGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATTTACATACCACTTATATTATATTAACTATTATCAGGAATTGA  989

seq1  GAGATAATATAAAGTATATGAAAAGGTGCTCTCAGGGTTTTAAATAATTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAATATAAAGTATATGAAAAGGTGCTCTCAGGGTTTTAAATAATTA  1039

seq1  CTATACCTTTTTATATAAGGAACTTCACCATCTGAAAATTTTGGTGTTCA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACCTTTTTATATAAGGAACTTCACCATCTGAAAATTTTGGTGTTCA  1089

seq1  GAGTGGTATCTACAACCCAATTACACAGATACCCAGAGTTAACTGAACAA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTATCTACAACCCAATTACACAGATACCCAGAGTTAACTGAACAA  1139

seq1  TAGGATTCCTGATGAACAAAACAATGGAATTC  1176
      ||||||||||||||||||||||||||||||||
seq2  TAGGATTCCTGATGAACAAAACAATGGAATTC  1171

seq1: chr3_109832272_109833409
seq2: B6Ng01-165H18.g_68_1198

seq1  GAATTCCTCAGCTTCCCCTCCCTCTAACACGCTATTCATTACTGAGCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGCTTCCCCTCCCTCTAACACGCTATTCATTACTGAGCTCC  50

seq1  CAAGATGTGAAAGACGAACACTTCTGGGTCTTTTTTGATATAGTTTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGTGAAAGACGAACACTTCTGGGTCTTTTTTGATATAGTTTTGAG  100

seq1  AAAGTACTGTTAGCTAACAAATCCAGCCCATAATAAATCTTCTTTATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACTGTTAGCTAACAAATCCAGCCCATAATAAATCTTCTTTATTTA  150

seq1  CTGCCCACCTGGCTGTAGCTCTATCAGGATCAGCAGGAGAAAAGGATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCACCTGGCTGTAGCTCTATCAGGATCAGCAGGAGAAAAGGATAAA  200

seq1  ATCTTATCAGTGAACTGCGCTGACACCACATGCAATTTCCTTTTCAGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATCAGTGAACTGCGCTGACACCACATGCAATTTCCTTTTCAGGAC  250

seq1  TTGGGGGACGTGAATTGCACACTAGTTCTTTCAGACTCCCAAGTGACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGACGTGAATTGCACACTAGTTCTTTCAGACTCCCAAGTGACAGT  300

seq1  TGCATTTTCCAGGGTGATGTGCACTGTCCAGAAGGAGCTGTTTAACTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTCCAGGGTGATGTGCACTGTCCAGAAGGAGCTGTTTAACTAAG  350

seq1  GCTTTGCCGTCCTCTCTTCATTCTTTACCTGATTCAGAAAAGCTGTGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCCGTCCTCTCTTCATTCTTTACCTGATTCAGAAAAGCTGTGAAT  400

seq1  GGCATGAAGAACATTCAAGATAGGGAGGCGGACAGAGAGACAGAGGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGAAGAACATTCAAGATAGGGAGGCGGACAGAGAGACAGAGGTTGA  450

seq1  GCAGTGGGACTCAAAGGGGAAGGGAAAAATAAGAAACCTCAGAAATATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGGACTCAAAGGGGAAGGGAAAAATAAGAAACCTCAGAAATATCA  500

seq1  CAATACCTGAAACCACCCAAAATAATGGTTTATTTATTCCGTATGAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACCTGAAACCACCCAAAATAATGGTTTATTTATTCCGTATGAGAAA  550

seq1  CTGAAAACAGGGAGTGCAGAAACTCTACTTTATAGCACAGACTCACACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAACAGGGAGTGCAGAAACTCTACTTTATAGCACAGACTCACACAA  600

seq1  TGGCAGTCTACATTAAAGAATGAAAGAGACCCTATTATTTCCAAGACAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGTCTACATTAAAGAATGAAAGAGACCCTATTATTTCCAAGACAGC  650

seq1  AGCCCTGGTTTGGTGCAGCAGATGTGGGAACACAATAGAAGACACATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTGGTTTGGTGCAGCAGATGTGGGAACACAATAGAAGACACATCAT  700

seq1  GTAGCCCACTGCTGGGGGTGCACTTGGGAAACCAAATTGTCAAGCTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCACTGCTGGGGGTGCACTTGGGAAACCAAATTGTCAAGCTTTCA  750

seq1  CATATTTTCAGATCAGTAGCTTTGGAAGTTACAGCAACATGAAGCAGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTCAGATCAGTAGCTTTGGAAGTTACAGCAACATGAAGCAGACT  800

seq1  AGTACAAAC-TTTTAAG-TTTGAACTATTTGGATACAACTTTGTGAACAC  848
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  AGTACAAACTTTTTAAGTTTTGAACTATTTGGATACAACTTTGTGAACAC  850

seq1  AGTATAAACAAATGACTTATGACTTTATAGGCAA-TACTCAAATCCATAC  897
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGTATAAACAAATGACTTATGACTTTATAGGCAATTACTCAAATCCATAC  900

seq1  ATGAGGATAATATCCTGAATATAAGTTGCAATAGTAAGTTAACTTTCAAA  947
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGAGGATAATATCCTGAATATAAGTTGC-ATAGTAAGTTAACTTTCAAA  949

seq1  TTTACTTTGTGTCAAACTGTTTTCAATCTTTTAGTTATTATAAACATGAT  997
      ||||||||||||||||||| |||||||||||||| |||||||||||||||
seq2  TTTACTTTGTGTCAAACTG-TTTCAATCTTTTAG-TATTATAAACATGAT  997

seq1  TTCAATGGTGGTCA-TCTGATAAATAGTTTATCTCCATGTTTGCTAGCAA  1046
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTCAATGGTGGTCATTCTGATAAATAGTTTATCTCCATGTTTGCTAGCAA  1047

seq1  ATGCAAATAATTTTATTACAAAATAAAACTAAGTTTTAATAATGT-GTTA  1095
      |||| ||||   ||| |||||||||||||||||  |||||||||| ||||
seq2  ATGCCAATA---TTA-TACAAAATAAAACTAAG-GTTAATAATGTGGTTA  1092

seq1  TGTATTCTCCTTATTCTTCACTAATCAAATGTGTAGTCTAGAT  1138
      | |  |||||||||   ||||||||||||||||| ||||||||
seq2  T-TGATCTCCTTAT--CTCACTAATCAAATGTGT-GTCTAGAT  1131