BAC Information

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BAC

Clone NameB6Ng01-165K18
Chromosome3 (Build37)
Map Location 138,523,744 - 138,625,987
singlet/doubletdoublet
Overlap geneTspan5, Rap1gds1
Upstream geneH2afz, Dnajb14, Map2k1ip1, Dapp1, EG329763, LOC100039528, Mttp, Rg9mtd2, 4930579F01Rik, Adh7, Adh1, Adh6a, LOC639769, Adh4, Adh5, Metap1, EG383925, EG668879, Eif4e, EG545570, LOC668881, LOC668882, Ppia-ps3_1437.1, LOC620771
Downstream geneEG229879, B930007M17Rik, LOC100039840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165K18.bB6Ng01-165K18.g
ACCDH957667DH957668
length1,070860
definitionDH957667|Mus musculus domesticus DNA, BAC clone: B6Ng01-165K18, 5' end.DH957668|Mus musculus domesticus DNA, BAC clone: B6Ng01-165K18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,523,744 - 138,524,820)(138,625,133 - 138,625,987)
sequence
gaattcagttagcagccaaatactcaaacaagaaaaacatccttcagaat
ttctgctaggtccagccagccctgagaacagcacccagaagtcgattctg
tctgcagagcagtaggttttatttcccctgtactgggaagttgaagacgg
ggcccagtgtgtgcttggaaagcactaaccactgagcagcaacccagacc
cacattggaatgttgaagggccatagtttccaggtataagaccaattacc
cttcacacctccatcctgtcattaccggaaaacacttctcagtagttctc
agttctgcccacgtttcctccatatcctggacacgatcagctcctgcctg
ctcctccctcatcttcctttggatccctgtggatccagacgtctgcaacc
cacatggtgattcttctcctcagtgccagcctgtcccacccactcccacc
caccactcagtctcacagatggtccctgagaatcctcctgtcaccagggt
gatgaatgggcgccttacaaggtccaaaagtgccgtgccacacttgcgtc
tctgattgcatgccagcccctcccatctgctgttgttagccacacagatt
tggtgacttgtaattctctccttaccacggggcagttttattctttcgtg
acctgaaagtcctctgaactgtaagagctatgtctgttttttcttatctc
cttttatcttgagacgtgtaaggtcaagtataaagttgggactcaaagcg
acttggaatactggaaaggtggctttttgaagtgtccatttcgtgccagt
tgggatgggacactgttccagtccaaaacaatggagtctgccaggatgaa
aataactggatatggaagaagagcttttccacttgacagtggggcagatg
catccttctggaatcaccctgtgacacccgagactattttcctttccagt
ttgccaaagcatcagtgtgctggctctggaatcaggtctagcttctgtcc
actgtacactcttggtcccatggggccatttcagttctggcgaagatgca
ccctcggagcctagacatca
gaattcttattcactaatttaaagtaaggatgctgagagctagaaaggat
ggtacttgctgaggaaaatgcttgctgggcaagtgtggggacctaagttc
aaatcccagaacccacataaacccatgcatatggaatcacagtgctcctg
caacacaatggaggacagtagcctgctgtgcccagccatgaacaagagag
agactgtcttaacaaggcaaaaggtgaggaccaacacttgaggctgttct
ctgacctccatgtgtgcactgtgaacacccacaatcatgttcacacacac
atgcacacgtgcacataaacaaaagattaaaacaggttagtgagtatggt
tagagagatgaaagaaagatttttaaataataaaaatgcaatacagcaga
tttagaaataaacaaatagaaattccagagctgaaatttccaacctaaat
taagtacttgctggcgggcaggcttctcagcaggatgcatagagtggaat
tagggaacctgtgagctgaagcccagtaggaactcctgaatgaagtcttc
aaaaaagggggaaatgacacaggcaggtggatcatcatgctctctccctt
ttggtaatggtggtggtggttgttttctgcctttgttgttttcttgtttt
tggtaccaaaaggggactaaatgttttgggaatggatagtacatcagcca
cattttaaagacaggtacgcagagatctcaaattacaaaaggtaccaact
ttctggtcagcatatggtaagcagagcaagtttttagacagccagggcca
ccttcagagatgccctgtctgagaaagacttctagaaggaaattcatacg
cacaaaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_138523744_138524820
seq2: B6Ng01-165K18.b_45_1114

seq1  GAATTCAGTTAGCAGCCAAATACTCAAACAAGAAAAACATCCTTCAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTAGCAGCCAAATACTCAAACAAGAAAAACATCCTTCAGAAT  50

seq1  TTCTGCTAGGTCCAGCCAGCCCTGAGAACAGCACCCAGAAGTCGATTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTAGGTCCAGCCAGCCCTGAGAACAGCACCCAGAAGTCGATTCTG  100

seq1  TCTGCAGAGCAGTAGGTTTTATTTCCCCTGTACTGGGAAGTTGAAGACGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGAGCAGTAGGTTTTATTTCCCCTGTACTGGGAAGTTGAAGACGG  150

seq1  GGCCCAGTGTGTGCTTGGAAAGCACTAACCACTGAGCAGCAACCCAGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGTGTGTGCTTGGAAAGCACTAACCACTGAGCAGCAACCCAGACC  200

seq1  CACATTGGAATGTTGAAGGGCCATAGTTTCCAGGTATAAGACCAATTACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGGAATGTTGAAGGGCCATAGTTTCCAGGTATAAGACCAATTACC  250

seq1  CTTCACACCTCCATCCTGTCATTACCGGAAAACACTTCTCAGTAGTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACACCTCCATCCTGTCATTACCGGAAAACACTTCTCAGTAGTTCTC  300

seq1  AGTTCTGCCCACGTTTCCTCCATATCCTGGACACGATCAGCTCCTGCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGCCCACGTTTCCTCCATATCCTGGACACGATCAGCTCCTGCCTG  350

seq1  CTCCTCCCTCATCTTCCTTTGGATCCCTGTGGATCCAGACGTCTGCAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCCTCATCTTCCTTTGGATCCCTGTGGATCCAGACGTCTGCAACC  400

seq1  CACATGGTGATTCTTCTCCTCAGTGCCAGCCTGTCCCACCCACTCCCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTGATTCTTCTCCTCAGTGCCAGCCTGTCCCACCCACTCCCACC  450

seq1  CACCACTCAGTCTCACAGATGGTCCCTGAGAATCCTCCTGTCACCAGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTCAGTCTCACAGATGGTCCCTGAGAATCCTCCTGTCACCAGGGT  500

seq1  GATGAATGGGCGCCTTACAAGGTCCAAAAGTGCCGTGCCACACTTGCGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATGGGCGCCTTACAAGGTCCAAAAGTGCCGTGCCACACTTGCGTC  550

seq1  TCTGATTGCATGCCAGCCCCTCCCATCTGCTGTTGTTAGCCACACAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTGCATGCCAGCCCCTCCCATCTGCTGTTGTTAGCCACACAGATT  600

seq1  TGGTGACTTGTAATTCTCTCCTTACCACGGGGCAGTTTTATTCTTTCGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGACTTGTAATTCTCTCCTTACCACGGGGCAGTTTTATTCTTTCGTG  650

seq1  ACCTGAAAGTCCTCTGAACTGTAAGAGCTATGTCTGTTTTTTCTTATCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAAGTCCTCTGAACTGTAAGAGCTATGTCTGTTTTTTCTTATCTC  700

seq1  CTTTTATCTTGAGACGTGTAAGGTCAAGTATAAAGTTGGGACTCAAAGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATCTTGAGACGTGTAAGGTCAAGTATAAAGTTGGGACTCAAAGCG  750

seq1  ACTTGGAATACTGGAAAGGTGGCTTTTTGAAGTGTCCATTTCGTGCCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAATACTGGAAAGGTGGCTTTTTGAAGTGTCCATTTCGTGCCAGT  800

seq1  TGGGATGGGACACTGTTCCAGTCCAAAACAATGGAGTCTGCCAGGATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGGGACACTGTTCCAGTCCAAAACAATGGAGTCTGCCAGGATGAA  850

seq1  AATAACTGGATATGGAAGAAGAGCTTTTCCACTTGACAGTGGGGCAGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTGGATATGGAAGAAGAGCTTTTCCACTTGACAGTGGGGCAGATG  900

seq1  CATCCTTCTGGAATCACCCTGTGACACCCGAGACTATTTTCCTTTCCAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATCCTTCTGGAATCACCCTGTGACACCCGAGACTATTTTCCTTTCCAG-  949

seq1  TTTGCCAAAGCATCAGTTGTGCTGGCTCTGGAATCCAGGTCTAGCTTCCG  1000
      |||||||||||||||| ||||||||||||||||| ||||||||||||| |
seq2  TTTGCCAAAGCATCAG-TGTGCTGGCTCTGGAAT-CAGGTCTAGCTTCTG  997

seq1  T-CACTGTACCACTCTTGGTTCCCATGGGGCCATTCTCAGTTCTGGCAGA  1049
      | ||||||| ||||||||| ||||||||||||||| ||||||||||| ||
seq2  TCCACTGTA-CACTCTTGG-TCCCATGGGGCCATT-TCAGTTCTGGC-GA  1043

seq1  AGAATGCACCTTGGATGCCTAGACATCA  1077
      || ||||||| | |  ||||||||||||
seq2  AG-ATGCACCCTCGGAGCCTAGACATCA  1070

seq1: chr3_138625133_138625987
seq2: B6Ng01-165K18.g_70_929 (reverse)

seq1  AAATTTTGTGCGTATGAATTTCCTTCTAGAAGTCTTTCTCAGACAGGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTGTGCGTATGAATTTCCTTCTAGAAGTCTTTCTCAGACAGGGCA  50

seq1  TCTCTG-AGGTGGCCCTGGCTGTCTAAAAACTTGCTCTGCTTACCATATG  99
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAAGGTGGCCCTGGCTGTCTAAAAACTTGCTCTGCTTACCATATG  100

seq1  CTGACCAGAAAGTTGGTACCTTTTGTAATTTGAGATCTCTGCGTACCTGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCAGAAAGTTGGTACCTTTTGTAATTTGAGATCTCTGCGTACCTGT  150

seq1  CTTT-AAATGTGGCTGATGTACTATCCATTCCCAAAACATTTAGT-CCCT  197
      |||| |||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTTTAAAATGTGGCTGATGTACTATCCATTCCCAAAACATTTAGTCCCCT  200

seq1  TTTGGTACC-AAAACAAGAAAACAACAAAGGCAG-AAACAACCACCACCA  245
      ||||||||| |||||||||||||||||||||||| |||||||||||||||
seq2  TTTGGTACCAAAAACAAGAAAACAACAAAGGCAGAAAACAACCACCACCA  250

seq1  CCATTACCAAAAGGGAGAGAGCATGATGATCCACCTGCCTGTGTCATTTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACCAAAAGGGAGAGAGCATGATGATCCACCTGCCTGTGTCATTTC  300

seq1  CCCCTTTTTTGAAGACTTCATTCAGGAGTTCCTACTGGGCTTCAGCTCAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTTTTGAAGACTTCATTCAGGAGTTCCTACTGGGCTTCAGCTCAC  350

seq1  AGGTTCCCTAATTCCACTCTATGCATCCTGCTGAGAAGCCTGCCCGCCAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCCTAATTCCACTCTATGCATCCTGCTGAGAAGCCTGCCCGCCAG  400

seq1  CAAGTACTTAATTTAGGTTGGAAATTTCAGCTCTGGAATTTCTATTTGTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACTTAATTTAGGTTGGAAATTTCAGCTCTGGAATTTCTATTTGTT  450

seq1  TATTTCTAAATCTGCTGTATTGCATTTTTATTATTTAAAAATCTTTCTTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTAAATCTGCTGTATTGCATTTTTATTATTTAAAAATCTTTCTTT  500

seq1  CATCTCTCTAACCATACTCACTAACCTGTTTTAATCTTTTGTTTATGTGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCTAACCATACTCACTAACCTGTTTTAATCTTTTGTTTATGTGC  550

seq1  ACGTGTGCATGTGTGTGTGAACATGATTGTGGGTGTTCACAGTGCACACA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGTGCATGTGTGTGTGAACATGATTGTGGGTGTTCACAGTGCACACA  600

seq1  TGGAGGTCAGAGAACAGCCTCAAGTGTTGGTCCTCACCTTTTGCCTTGTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTCAGAGAACAGCCTCAAGTGTTGGTCCTCACCTTTTGCCTTGTT  650

seq1  AAGACAGTCTCTCTCTTGTTCATGGCTGGGCACAGCAGGCTACTGTCCTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGTCTCTCTCTTGTTCATGGCTGGGCACAGCAGGCTACTGTCCTC  700

seq1  CATTGTGTTGCAGGAGCACTGTGATTCCATATGCATGGGTTTATGTGGGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGTTGCAGGAGCACTGTGATTCCATATGCATGGGTTTATGTGGGT  750

seq1  TCTGGGATTTGAACTTAGGTCCCCACACTTGCCCAGCAAGCATTTTCCTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGATTTGAACTTAGGTCCCCACACTTGCCCAGCAAGCATTTTCCTC  800

seq1  AGCAAGTACCATCCTTTCTAGCTCTCAGCATCCTTACTTTAAATTAGTGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGCAAGTACCATCCTTTCTAGCTCTCAGCATCCTTACTTTAAATTAGTGA  850

seq1  ATAAGAATTC  855
      ||||||||||
seq2  ATAAGAATTC  860