BAC Information

Click to search

BAC

Clone NameB6Ng01-165N12
Chromosome18 (Build37)3 (Build37)
Map Location 37,255,798 - 37,256,43739,567,055 - 39,567,396
singlet/doubletsingletsinglet
Overlap genePcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1
Upstream geneLOC100042150, LOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427
Downstream genePcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-165N12.bB6Ng01-165N12.g
ACCDH957790DH957791
length640663
definitionDH957790|Mus musculus domesticus DNA, BAC clone: B6Ng01-165N12, 5' end.DH957791|Mus musculus domesticus DNA, BAC clone: B6Ng01-165N12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(37,255,798 - 37,256,437)(39,567,055 - 39,567,396)
sequence
gaattcttggttgattttctcatatgaaagcttgcagacttgtggagttc
agccctactgtataaatttacaacatgactcctgtacttaaggcctaaga
tcaaagatgttaagaaccagaacagggaatttgctcctgggaatgtcaga
agtgatacccataaagtcttaccaatatggttgcataaataagatctgaa
caaagatgacacaaatagacctgctaatgtggaaggtggaaaactcatga
ggcctcatccctacacaaagagtgtcagacaactaagaagtgctgagagt
tagagaaagagtcttccccagggaaaggcatgctaattagttatacaata
ccaaagggtcagtactgaaaacatgcatataagtaaccttatacagacta
agcaggttattgttgtattatgtatttatgtaaaaacctcatttatatag
tataatagagaaacctcatttatatagtataatagaaaaactataataga
aaaataggataggtaattttgttatatattatatatataatacatattgt
tttaaacaataaaaaaggaggacttgaatttgaaagagagcaaggagggg
tatatggaatagctaggagggaggaaagggaagggggata
gaattcaccagagacctgggaggtgagagacttccaggactcaaaggacc
ttagatgaaatgcctgacagtaggaaaagggaacttacagagcccccctc
cagcaggaagacaggacatcaagtgaaggatggggttgccattccacagt
cacacctctgacccataattgttcctgtctgaaagaattacagggataga
aatggaaaggagcctgaggaaaagaaggtccagctacaggcccaaagtgg
gatccagcttaaggggaggtcccaaggcctgactgaggctatggagcact
cacaaaaagggatctacatgactgccctttgaaagacccaacaagcagct
gaaagagtcagatgcagatatttgtacccaaccaatggacagaaacagcc
aacccctattgttgaattagggaaggctgaaagaagctgaggagaagggt
gattctgtaggaccagcagtctcaatctggacccctgagatctttcaaac
actggaccaccaaacagacagcatacaccagctgatatgaggcccccaac
acacatacagtagaggacttctgggtctgcattcatttagaaatgatgca
tctaatcctcaagagagtggaggccccagggagtttagaggtcaggtggg
gtgggggtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_37255798_37256437
seq2: B6Ng01-165N12.b_46_685

seq1  GAATTCTTGGTTGATTTTCTCATATGAAAGCTTGCAGACTTGTGGAGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGTTGATTTTCTCATATGAAAGCTTGCAGACTTGTGGAGTTC  50

seq1  AGCCCTACTGTATAAATTTACAACATGACTCCTGTACTTAAGGCCTAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTACTGTATAAATTTACAACATGACTCCTGTACTTAAGGCCTAAGA  100

seq1  TCAAAGATGTTAAGAACCAGAACAGGGAATTTGCTCCTGGGAATGTCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGATGTTAAGAACCAGAACAGGGAATTTGCTCCTGGGAATGTCAGA  150

seq1  AGTGATACCCATAAAGTCTTACCAATATGGTTGCATAAATAAGATCTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATACCCATAAAGTCTTACCAATATGGTTGCATAAATAAGATCTGAA  200

seq1  CAAAGATGACACAAATAGACCTGCTAATGTGGAAGGTGGAAAACTCATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATGACACAAATAGACCTGCTAATGTGGAAGGTGGAAAACTCATGA  250

seq1  GGCCTCATCCCTACACAAAGAGTGTCAGACAACTAAGAAGTGCTGAGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCATCCCTACACAAAGAGTGTCAGACAACTAAGAAGTGCTGAGAGT  300

seq1  TAGAGAAAGAGTCTTCCCCAGGGAAAGGCATGCTAATTAGTTATACAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAAGAGTCTTCCCCAGGGAAAGGCATGCTAATTAGTTATACAATA  350

seq1  CCAAAGGGTCAGTACTGAAAACATGCATATAAGTAACCTTATACAGACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGGTCAGTACTGAAAACATGCATATAAGTAACCTTATACAGACTA  400

seq1  AGCAGGTTATTGTTGTATTATGTATTTATGTAAAAACCTCATTTATATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTTATTGTTGTATTATGTATTTATGTAAAAACCTCATTTATATAG  450

seq1  TATAATAGAGAAACCTCATTTATATAGTATAATAGAAAAACTATAATAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAGAGAAACCTCATTTATATAGTATAATAGAAAAACTATAATAGA  500

seq1  AAAATAGGATAGGTAATTTTGTTATATATTATATATATAATACATATTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGGATAGGTAATTTTGTTATATATTATATATATAATACATATTGT  550

seq1  TTTAAACAATAAAAAAGGAGGACTTGAATTTGAAAGAGAGCAAGGAGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAATAAAAAAGGAGGACTTGAATTTGAAAGAGAGCAAGGAGGGG  600

seq1  TATATGGAATAGCTAGGAGGGAGGAAAGGGAAGGGGGATA  640
      ||||||||||||||||||||||||||||||||||||||||
seq2  TATATGGAATAGCTAGGAGGGAGGAAAGGGAAGGGGGATA  640

seq1: chr3_39567055_39567396
seq2: B6Ng01-165N12.g_197_732 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  CCCCCACCCCCACCCCACCTGACCTCTAAACTCCCTGGGGCCTCCACTCT  50

seq1  --------------------------------------------------  0
                                                        
seq2  CTTGAGGATTAGATGCATCATTTCTAAATGAATGCAGACCCAGAAGTCCT  100

seq1  --------------------------------------------------  0
                                                        
seq2  CTACTGTATGTGTGTTGGGGGCCTCATATCAGCTGGTGTATGCTGTCTGT  150

seq1  --------------------------------------------------  0
                                                        
seq2  TTGGTGGTCCAGTGTTTGAAAGATCTCAGGGGTCCAGATTGAGACTGCTG  200

seq1  --CCCCCA----CCCCCACCCCACCAG-ACCTCTAAAC--TCCCTGGTGC  41
        ||  ||    | |||  | |  |||   || | | |  |||||  | |
seq2  GTCCTACAGAATCACCCTTCTCCTCAGCTTCTTTCAGCCTTCCCTAATTC  250

seq1  --CTCCAGAGGTCAGCTGCTTCTGTCCATTGATTGGGTGAAAATAACTGT  89
        |   || |||  |||| |||||||||||| ||||||  ||||| ||| 
seq2  AACAATAGGGGTTGGCTGTTTCTGTCCATTGGTTGGGTACAAATATCTGC  300

seq1  ATATGACTCTTTCAACTGCTTTTTGGTTCTTCCAGAGTGCTAGAGTATGG  139
      || ||||||||||| |||||| |||| |||| || || ||         |
seq2  ATCTGACTCTTTCAGCTGCTTGTTGGGTCTTTCAAAGGGC--------AG  342

seq1  TCATGCTAGGTCCCTTTTTGTGAGTGCTCCATAGCCTCAGTAACAGTGTC  189
      ||||| ||| |||||||||||||||||||||||||||||        |||
seq2  TCATG-TAGATCCCTTTTTGTGAGTGCTCCATAGCCTCA--------GTC  383

seq1  AGGTCTCAGAAACTCCTCTTGAGGCAGATCCTACTTTGGGACTGTTACTA  239
      ||| ||  | | |||| ||| ||   ||||| |||||||| ||||  || 
seq2  AGGCCTTGGGACCTCCCCTTAAGCTGGATCCCACTTTGGGCCTGTAGCTG  433

seq1  GGCCTCCTTATCCTCAGGCTCCTCTCCATTTCCATCCCTGAAGTTCTTTC  289
      | ||| ||| ||||||||||||| |||||||| ||||||| | |||||||
seq2  GACCTTCTTTTCCTCAGGCTCCTTTCCATTTCTATCCCTGTAATTCTTTC  483

seq1  TGACAGGAACAATTTTAGGTCAGAGTTGTGACTGTGGGATGGCAACCCCA  339
       ||||||||||||| | |||||||| ||||||||||| ||||||||||||
seq2  AGACAGGAACAATTATGGGTCAGAGGTGTGACTGTGGAATGGCAACCCCA  533

seq1  TCC  342
      |||
seq2  TCC  536