BAC Information

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BAC

Clone NameB6Ng01-166A11
Chromosome5 (Build37)3 (Build37)
Map Location 143,689,728 - 143,689,922118,838,898 - 118,840,026
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666727, Foxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb
Downstream geneFscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-166A11.bB6Ng01-166A11.g
ACCDH957925DH957926
length5771,129
definitionDH957925|Mus musculus domesticus DNA, BAC clone: B6Ng01-166A11, 5' end.DH957926|Mus musculus domesticus DNA, BAC clone: B6Ng01-166A11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(143,689,728 - 143,689,922)(118,838,898 - 118,840,026)
sequence
gaattccattttgattaatggagatctctcctgtttggcgttggttgctg
gctttttcattatatagaaatatctaaaagcactcagttcggtctaaatt
gggctggagaagtggctcagtggttaagagcacaaactactcttgcacag
gacctaagttcagctctcagcactcatatcaggtagttcagggctacctg
taactccagctccaggatagaccgtgaacttggattcatgtgaacagaca
cactcatacacataattaaaaatataaggaatctgtgagtacatacaatt
cctctactctgtactttagggtctgggttacctcagtcaagatggtattt
tctagttccatccattttcatgagtgtctattagccaaaaattacaaaat
acccatgatacaaccctaagaagtttaacaagtaggaaggcccatgtgat
gatgcttcaatcctacctagaaggaggatcaaaatattcacaaataatca
caggagccagagggatgaagggacctaactgggggaggggagggggaagg
aaaaagagggcaggactaggtttggga
gaattcattctatgaaagcatttccctggatttcacatggtacctaaaat
ccctttattctctgaatccacagactctacatttgcatattaagcaaact
gtatatatgatggatgccatgataaaatttaattctacctttgagagtct
aacttgatcttgccttgcctttaggcaaactagtttgacagtaagagaag
ggattctgaatataaaagtcttgaatatttaaaatataaaaggttcattt
aatactgttctagtttgaataccagcatgtataaagtgctaggacgggct
gtggctgaatggcacagtagtgagcaggcatgctacatacatcagtgatg
tgccccaatataaatgaccatttgcacaaacacaaacaactaaccacaaa
cctcagatttgtattcaaacataaaaatacatgcttaaaaaatacactta
tgtcaatcattcagccaggcaacgtaggtgaagacagccctggctaggga
tcttgaagagctctcaaccatgctgaagactgaacactgaacctagtaag
acttttgacttgacctgatattacacaataccatgatgttctctgtggta
tgcaaagatggttgattgtacattttacttggatacctttaaaactgtga
agggagaaattacttctgagacttcgggtggtgaaattaaacatgatctg
taattggcttcgtgatcttctgtgccgggtctgctttatacatgtattta
cctaattgaccatgaaatcttccacagagcctgtgcttggcatgagcctt
gccaattttaaactgactatgataaatggctttatcatgctgcgtgcttc
tctgcttttctgtgggaataaaaatacttaaaaacattttccttcagtaa
tggacattaatttttaagtggagagtttacttacagagtcacagtctgta
attagaagtatattagcaattgtagatggtttgcattgtgtttgtttggt
ttggtttggtttagaggagcttccgggcttcccaaggaaaagaagcagag
tgcctcaggtgtagggaatcaccattcatggaaatgtgcttagaatcatc
gtaacgcagaaggcaatgggaggagtaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_143689728_143689922
seq2: B6Ng01-166A11.b_146_309

seq1  GGGCTGGAGAGGTGGCTCAGTGGTTAGGAGCACTTGCTGATCTCACAGGG  50
      |||||||||| ||||||||||||||| ||||||   ||  |||  ||  |
seq2  GGGCTGGAGAAGTGGCTCAGTGGTTAAGAGCACAAACTACTCTTGCACAG  50

seq1  GTCCTGTGTTTGACTCCCAGCACCCATGTCTGGTGGCTCCCAACTGCCTG  100
      | |||  |||   ||| |||||| ||| || ||| | ||    || ||||
seq2  GACCTAAGTTCAGCTCTCAGCACTCATATCAGGTAGTTCAGGGCTACCTG  100

seq1  TGACTCTAATTCCAGGGGATCCTATATGTCTGGCTCCCATGGGCACCAAC  150
      | |||| |  ||||||  |  |  |     ||| |  |||| |    |||
seq2  TAACTCCAGCTCCAGGATAGACCGTGAACTTGGAT-TCATGTG----AAC  145

seq1  AGTTACATGCACATACCCACCTACAAACACACACTCATACACATA  195
      ||                          |||||||||||||||||
seq2  AG--------------------------ACACACTCATACACATA  164

seq1: chr3_118838898_118840026
seq2: B6Ng01-166A11.g_66_1194

seq1  GAATTCATTCTATGAAAGCATTTCCCTGGATTTCACATGGTACCTAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTATGAAAGCATTTCCCTGGATTTCACATGGTACCTAAAAT  50

seq1  CCCTTTATTCTCTGAATCCACAGACTCTACATTTGCATATTAAGCAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTATTCTCTGAATCCACAGACTCTACATTTGCATATTAAGCAAACT  100

seq1  GTATATATGATGGATGCCATGATAAAATTTAATTCTACCTTTGAGAGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATGATGGATGCCATGATAAAATTTAATTCTACCTTTGAGAGTCT  150

seq1  AACTTGATCTTGCCTTGCCTTTAGGCAAACTAGTTTGACAGTAAGAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGATCTTGCCTTGCCTTTAGGCAAACTAGTTTGACAGTAAGAGAAG  200

seq1  GGATTCTGAATATAAAAGTCTTGAATATTTAAAATATAAAAGGTTCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTGAATATAAAAGTCTTGAATATTTAAAATATAAAAGGTTCATTT  250

seq1  AATACTGTTCTAGTTTGAATACCAGCATGTATAAAGTGCTAGGACGGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGTTCTAGTTTGAATACCAGCATGTATAAAGTGCTAGGACGGGCT  300

seq1  GTGGCTGAATGGCACAGTAGTGAGCAGGCATGCTACATACATCAGTGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGAATGGCACAGTAGTGAGCAGGCATGCTACATACATCAGTGATG  350

seq1  TGCCCCAATATAAATGACCATTTGCACAAACACAAACAACTAACCACAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCAATATAAATGACCATTTGCACAAACACAAACAACTAACCACAAA  400

seq1  CCTCAGATTTGTATTCAAACATAAAAATACATGCTTAAAAAATACACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGATTTGTATTCAAACATAAAAATACATGCTTAAAAAATACACTTA  450

seq1  TGTCAATCATTCAGCCAGGCAACGTAGGTGAAGACAGCCCTGGCTAGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATCATTCAGCCAGGCAACGTAGGTGAAGACAGCCCTGGCTAGGGA  500

seq1  TCTTGAAGAGCTCTCAACCATGCTGAAGACTGAACACTGAACCTAGTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAGAGCTCTCAACCATGCTGAAGACTGAACACTGAACCTAGTAAG  550

seq1  ACTTTTGACTTGACCTGATATTACACAATACCATGATGTTCTCTGTGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTGACTTGACCTGATATTACACAATACCATGATGTTCTCTGTGGTA  600

seq1  TGCAAAGATGGTTGATTGTACATTTTACTTGGATACCTTTAAAACTGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGATGGTTGATTGTACATTTTACTTGGATACCTTTAAAACTGTGA  650

seq1  AGGGAGAAATTACTTCTGAGACTTCGGGTGGTGAAATTAAACATGATCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAAATTACTTCTGAGACTTCGGGTGGTGAAATTAAACATGATCTG  700

seq1  TAATTGGCTTCGTGATCTTCTGTGCCGGGTCTGCTTTATACATGTATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGGCTTCGTGATCTTCTGTGCCGGGTCTGCTTTATACATGTATTTA  750

seq1  CCTAATTGACCATGAAATCTTCCACAGAGCCTGTGCTTGGCATGAGCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTGACCATGAAATCTTCCACAGAGCCTGTGCTTGGCATGAGCCTT  800

seq1  GCCAATTTTAAACTGACTATGATAAATGGCTTTATCATGCTGCGTGCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATTTTAAACTGACTATGATAAATGGCTTTATCATGCTGCGTGCTTC  850

seq1  TCTGCTTTTCTGTGGGAATAAAAATACTTAAAAACATTTTCCTTCAGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTTCTGTGGGAATAAAAATACTTAAAAACATTTTCCTTCAGTAA  900

seq1  TGGACATTAATTTTTAAGTGGGAGAGTTTACTTACAAGAGTCACAGGTCT  950
      ||||||||||||||||||| ||||||||||||||| ||||||||| ||||
seq2  TGGACATTAATTTTTAAGT-GGAGAGTTTACTTAC-AGAGTCACA-GTCT  947

seq1  GTAATTAGAAGTATATTAGCAATTGTAGATGGTTTTGCATTGTGTTTTGT  1000
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  GTAATTAGAAGTATATTAGCAATTGTAGATGG-TTTGCATTGTG-TTTGT  995

seq1  TTGGTTTGGTTTGGTTTAGAGAGCCTTCGGGGCTTCCCAGGGAAACAGAG  1050
      |||||||||||||||||||||   |||| |||||||||| |||||   ||
seq2  TTGGTTTGGTTTGGTTTAGAGGAGCTTCCGGGCTTCCCAAGGAAAAGAAG  1045

seq1  CAGAGTG-CTCAGGTGTAGGGAATCACCA-TCATGGAGA-GTGCCATAG-  1096
      ||||||| ||||||||||||||||||||| ||||||| | ||| | ||| 
seq2  CAGAGTGCCTCAGGTGTAGGGAATCACCATTCATGGAAATGTG-CTTAGA  1094

seq1  ATCATCGTAACGCAGAAG--CATGGGAGGAGTAAG  1129
      ||||||||||||||||||   ||||||||||||||
seq2  ATCATCGTAACGCAGAAGGCAATGGGAGGAGTAAG  1129